Gene

KWMTBOMO02448

Annotation

retrovirus-related_gag-pol_polyprotein_[Lasius_niger]

Location

Bomo_Chr5(-):2238698-2242971      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.046

CDS

ATGACTTCTAATATTAATATTGATCGACTTACGGGTGATAACTATGACACCTGGAAGATTCACATGCGAGCTATTCTGAAGAAGAATGATTTGTGGGAATACGTATCAGGAAAAATACCGAAACCAATACATTCAGATTCTAAATATTCTGAATGGAATAAAATGGACGGAAAAGCCGAATCGGACATATTGTTAGCTGTCAGCCCGAGCGAGTTAATTGCACTGGATGGTTTAGACTCCTCTAAAGCAATATGGGACAAGTTAAAATCTATGTATGAGTCAAGCGGGCCAGCGCGAAAAGCGTCATTACTAAAGAGACTTGTATTAAATCATATGCCAGAAGATGGAGACCTACGAAAACATATTTCTGATTTTTTCGACTGTGTTAAGAAGCTTAAAGAAATCGGATTGATAGTGATAGATGAGTTGCTTGCTATTTTATTACTTTATAGTTTACCGGATTCGTTCTCAATGTTTCGAACAGCAATGGAATCGCGTGATGATTTACCATCAACTGATGTACTGAAAGTGAAGATTATCGAGGATTATGAAGGTCGGAAGAGTAAGATAATAGACCAGAGGGCTATGTTCGTCAAGCGTACCAATATTAAATCAAATGCCAACCCGAAGAAGAACTTTGAACAGCACACAAATAAAAACATTGAGTGCTATCGTTGCGGTCGTCTTGGGCATATGGCGAGAGAGTGCAGAACTAAAAACGTGAGTAAGCTTAAACAAAGCTCACATAAAGCAGAATGTAATAGTGATGATGAGCACAAGACAACTATGTTAGTAAGTACCACCAAAGAGGTGATGATAGCCGAGCAGAGAGCTCCTGTATGGTGTATTGACAGTGGATGTACGGGACATATGTGTAACAACAAACAATTGATTAAAGATTTTACTCGAGTTGATACAGACTTGAATTTGGCTAATGGTAAAACTACAAAAATTAGCGGTTCGGGAAAAGTCAGTACTATGGTAGACACAGGCAGCGAAAAGCGCCATGTTGATATTAAAAAAGTGTTCTACGTGTCGGATCTACGAACTAATTTATTATCAGTTGCGAAGATGACAGATCACGGGTTTGAAGTTCGCTTCAATAAAAATTATGCAATTGTCATAGATGACAATAATAAGGTTCATATGCGAGCGGATCGAGTTGGTAACTTATACCACGTCCGAATGAGCCAAGATGATGTCAATAATGTTGAAATGGTGAAAAAACCTATAGATATGTGGCACGAGCGCCTCGGCCATCTTAACGAGCGTGATTTAAAGGCAATGGCGAAAAATGGCCTTGTCCATGGCCTATCATTGAAGGACAACGAAAAATTGTCAGAGTGTGAAATATGTATAAGTGAAAAACAGACATGCACGCCTTTTTCTAAAGGAAGCGAAGATCGTACCAGTGAACTATTGGAGATCGTGCATACAGATGTGTGCGGACCAATGAGACAACAGTCTATGGGCGGTAAAAAGTATTTTGTCACATTCATCGACGACAAATCAAGATGGTGTGAAGTATACTTTATTGCTAATAAAAGCGACGTACTTCAAGTTTTCAAAGATTACAAGGCTTACGTGGAAAAATTGACAGGAAAGAAGATCAAAAATCTACAATCCGATAACGGTCGAGAATACATTAACAAAGACTTTGATGATTTCTTGAAGAAAGAAGGAATAAGACGGAGGTTGACGGCACCTTATACGCCTCAGCAGAACGGGATTTCGGAGAGAAAGAACAGGACATTGCTAGAGATGGCCCGTTGTATGATGCGTCAGGCGGGAAGCCCTCCTGTTTTTTGGGCTGAAGCAATTAATACTGCTAATTACATAAGGAACCGATGCCCCACTGCAGCTCTTGATGGTCAAATACCATTTACCCTGTGGAAAGGAAAGAAACCTACCGTAATCTACATGCGCGTGTTTGGATCGAAAGCGTATTATAAAAACAAAGGAACGCAGAAGGGAAAATTCGAATCAAGTTCAGAGCTTGGAATATTTATGGGCTATGCTACTGAGTCTAAAGCTTACAGAATACATGATCCTAAGACTAGAAGAATCGTCATTTCTCGCGATGTGAAGTTTATGAACGAGACAGCATTCTGTCATGAGTATAAAGAAATACGAAATGACGAAGAAGAGAGTTTTGATAATTCGAAGATAGTCGTTGAATTGACAGGACATGATCAGAAGAAGGAAGATCGAAAAACAAACCCCATGAGAGGGAGAGGAAGACCAAGGATAGTTCGTACTGGCTTAGTGGGAAGACCGCGCAAAGAGTATAAACCAGCTACTAACAGTACAGAGAGTGAAACTGAATCGGAGTATGAAGTAGATAATGAAGAAACGATAGCTGGAATTGCGATTATGGAACCTAAAACATGGAAAGAAATAGAAAAGACTGATGACGAACCTGAATGGCGAAGGGCTTTAGAAGACGAGTATTTGGCACAATTAAAGAATGTTACATGGGAAATAGTCCCACGACCGAAAAATAGAAAAGTGATTGGTAGCAGATTTGTATTTCAAACAAAGAATACAGGGAAGAAAGTACGGCTTGTCGCAAAGGGATGTTCTCAAAGGCCAGGGGAGGATTTTTACGAAACCTTTTCTCCTGTTGTAAGGTCTTCATCTGTGAGACTCATAGCTGCAGTGTCAGCAGAGTTAGGATTAGAGATGCATCAAATGGATGTAGTAACAGCTTACTTGAATGGTACTCTCGAAGAAGATGTATTCATGGAAATACCAGATAAACTATCAGATGTCTTAGAAAGTGTACTAGCAAACCAAAATATTGGATCAAAACGAGATATTATAAGAGATAAGAATATACTTCATACAGCTAAACGCTGGAACGAAGCATTGAATGAGTGTGAGAATAATGTGTGTTTGTTAAAGAACTCTTTGTATGGTTTGCGTCAATCAGGATTACAGTGGCATAAAAAGTTAGTAGGAAGGTTGAAGAATATTGGTTTTGAAGCATTACCACAAGAACCTTGTGTGTTTGTTGCGCAAAGGGATGAAAAAATGATGTTAATTGCTATTTATGTAGATGACATTATCCTAGCTACTAATGATGAGGTGTGGTTGCATGATGTTAAGCGTCAGTTATCTAATGCCTTTGAAATGAAGGATATGGGAAAAATCAGTACTTGTTTGGGTATCGAATTTTCACGTGATAAGGAGCATAGAGTGTATTTAAAGCAAGGTGCGTATATAGATAAAGTATTAGAGCGTTATGGTATGAGTGATTGTAAACCTATATCAACACCTATGGATGTGAACGTTAAACTAGAAAAACCCAACAGTGTAAACAATGATGTTATGAGTCAGTACCCTTACCAGAACCTTATAGGTGCCCTTATGTATTTGGCTGTATCTACCAGACCGGATATAGCTTATACTGTAAATTATTTAAGCCAATTTAACACTAATTATGATGTACAGCATTGGAAGGCAGCTAAGCGAGTGTTGAGGTATTTGAAAGGTACATCAACTTTCGGCTTAATGTATGAGAGGACAGGTGTACCATTGTTTGGTGTAGTTGATGCAGACTGGGGTGCAAATACGATTGATAGAAGGTCATATTCCGGTTTTGCATTTATTTTAGCAGGTGCCCCAATTACCTGGGAAGCACGAAAACAGCGTACCGTTGCATTATCGAGCACAGAAGCCGAGTACTTGGCGCTTTCTGAAGCAACTAAGGAAGCTATGTATCTCAGAAATGTGATAAACAATGTTGGTGTAAAATGTAGTTGTGTGACATTATTTAATGACAACCAGGGTGCTATGAAGCTTGCACAGAGTAGAAGCTATCATTCTCGCACTAAGCATATTGATGTTAGACACCATTTTGTTCAAGATATGTGTGAACAGAGTGTGATTGATTTGAAATACTTGAGTACAGACAAAATGCCTGCTGATATTTTGACCAAGGGCTTGTGTGGGACGAAGCATTATGAATGCATGAATAATTTAGGTATGATGGAATAA

Protein

MTSNINIDRLTGDNYDTWKIHMRAILKKNDLWEYVSGKIPKPIHSDSKYSEWNKMDGKAESDILLAVSPSELIALDGLDSSKAIWDKLKSMYESSGPARKASLLKRLVLNHMPEDGDLRKHISDFFDCVKKLKEIGLIVIDELLAILLLYSLPDSFSMFRTAMESRDDLPSTDVLKVKIIEDYEGRKSKIIDQRAMFVKRTNIKSNANPKKNFEQHTNKNIECYRCGRLGHMARECRTKNVSKLKQSSHKAECNSDDEHKTTMLVSTTKEVMIAEQRAPVWCIDSGCTGHMCNNKQLIKDFTRVDTDLNLANGKTTKISGSGKVSTMVDTGSEKRHVDIKKVFYVSDLRTNLLSVAKMTDHGFEVRFNKNYAIVIDDNNKVHMRADRVGNLYHVRMSQDDVNNVEMVKKPIDMWHERLGHLNERDLKAMAKNGLVHGLSLKDNEKLSECEICISEKQTCTPFSKGSEDRTSELLEIVHTDVCGPMRQQSMGGKKYFVTFIDDKSRWCEVYFIANKSDVLQVFKDYKAYVEKLTGKKIKNLQSDNGREYINKDFDDFLKKEGIRRRLTAPYTPQQNGISERKNRTLLEMARCMMRQAGSPPVFWAEAINTANYIRNRCPTAALDGQIPFTLWKGKKPTVIYMRVFGSKAYYKNKGTQKGKFESSSELGIFMGYATESKAYRIHDPKTRRIVISRDVKFMNETAFCHEYKEIRNDEEESFDNSKIVVELTGHDQKKEDRKTNPMRGRGRPRIVRTGLVGRPRKEYKPATNSTESETESEYEVDNEETIAGIAIMEPKTWKEIEKTDDEPEWRRALEDEYLAQLKNVTWEIVPRPKNRKVIGSRFVFQTKNTGKKVRLVAKGCSQRPGEDFYETFSPVVRSSSVRLIAAVSAELGLEMHQMDVVTAYLNGTLEEDVFMEIPDKLSDVLESVLANQNIGSKRDIIRDKNILHTAKRWNEALNECENNVCLLKNSLYGLRQSGLQWHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIILATNDEVWLHDVKRQLSNAFEMKDMGKISTCLGIEFSRDKEHRVYLKQGAYIDKVLERYGMSDCKPISTPMDVNVKLEKPNSVNNDVMSQYPYQNLIGALMYLAVSTRPDIAYTVNYLSQFNTNYDVQHWKAAKRVLRYLKGTSTFGLMYERTGVPLFGVVDADWGANTIDRRSYSGFAFILAGAPITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNVINNVGVKCSCVTLFNDNQGAMKLAQSRSYHSRTKHIDVRHHFVQDMCEQSVIDLKYLSTDKMPADILTKGLCGTKHYECMNNLGMME

Uniprot

W8C110   W8C8N7   A0A0J7KDR3   A0A0V1GS48   A0A224X581   A0A0V0V098   + More
A0A0V1NJN8   A0A0J7K7M6   A0A0V0T740   A0A0J7KH67   A0A0J7KDV5   A0A0J7KDP1   A0A034WVC8   A0A0V1APE7   W8B6G9   W8AYT4   A0A069DXI1   B6V6Z8   A0A0A1XLZ7   W8BWJ0   A0A0J7KBT5   A0A0K8W4G0   A0A0A1X768   W8ANX7   W8BYI7   A0A1Y3EJJ4   A0A0K8WJW9   A0A0K8U6X2   A0A0K8U6S2   W8AQ86   W8ADM5   A0A0A1WFC7   A0A194RJV9   A0A0V0W368   W8AL23   A0A194RU38   B8YLY4   B8YLY3   B8YLY6   A0A0J7K7B7   B8YLY5   A0A146LH62   A0A182GA29   A0A2N9FQJ1   A0A0V0RWJ3   A0A2N9ETC8   A0A2N9H4V1   Q53ND1   W8BEX4   A0A2N9IGN3   A0A2N9FWL6   A0A251VAZ6   V9H104   T1PKV2   A0A2N9ERS9   A0A2N9GA80   A0A2N9HZ75   A0A0J7K6W1   A0A2N9EE21   A0A2N9I6N4   A0A2B4R8Q4   A5AS37   A0A2N9I8Q5   A0A0J7NHJ8   K7JAW3   A0A0V1H997   A0A2N9GHK9   J9KJ72   A0A182G1G7   Q6AUC7   A5B5N4   A0A2N9GHK3   A0A151T355   A0A251V331   A0A2N9H6B2   A0A151QNH6   A5BJQ3   A0A2N9EM80   A5C9A6   A0A2N9EYI8   A0A2N9JB15   A0A1Y1N3X2   A0A151TVS9   A5BFU1   A5B1S3   A5CBM1   Q9ZQE9   A0A151UCJ8   A0A2N9ETQ8   A0A2N9FSJ8  

Pubmed

24495485    25348373    26334808    25830018    26354079    19656907    + More
26823975    26483478    16188032    28538728    2456522    1658740    20075255    22057054    28004739   

EMBL

GAMC01007164    JAB99391.1    GAMC01002869    JAC03687.1    LBMM01008999    LBMM01007721    + More
KMQ88472.1    KMQ89488.1    JYDP01000350    KRZ01021.1    GFTR01008771    JAW07655.1    JYDN01000113    KRX56900.1    JYDM01000185    KRZ84108.1    LBMM01012368    KMQ86259.1    JYDJ01000518    KRX34768.1    LBMM01007580    KMQ89607.1    LBMM01008805    KMQ88628.1    LBMM01008884    KMQ88558.1    GAKP01000358    JAC58594.1    JYDH01000361    KRY26687.1    GAMC01013937    JAB92618.1    GAMC01015163    JAB91392.1    GBGD01000131    JAC88758.1    FJ238509    ACI62137.1    GBXI01002679    JAD11613.1    GAMC01008929    JAB97626.1    LBMM01010043    KMQ87706.1    GDHF01006360    JAI45954.1    GBXI01007143    JAD07149.1    GAMC01020352    JAB86203.1    GAMC01008189    JAB98366.1    LVZM01013697    OUC43997.1    GDHF01000873    JAI51441.1    GDHF01029905    JAI22409.1    GDHF01030254    JAI22060.1    GAMC01018338    JAB88217.1    GAMC01020355    JAB86200.1    GBXI01017107    JAC97184.1    KQ460297    KPJ16236.1    JYDK01000327    KRX69779.1    GAMC01019998    JAB86557.1    KQ459875    KPJ19636.1    FJ544853    ACL97384.1    FJ544851    ACL97383.1    FJ544856    ACL97386.1    LBMM01012669    KMQ86061.1    FJ544854    ACL97385.1    GDHC01011760    JAQ06869.1    JXUM01155348    KQ572178    KXJ68066.1    OIVN01001052    SPC89229.1    JYDL01000068    KRX18751.1    OIVN01000557    SPC82046.1    OIVN01002854    SPD06945.1    AC134048    DP000010    AAX92941.1    ABA91548.1    GAMC01011082    JAB95473.1    OIVN01005591    SPD23209.1    OIVN01001534    SPC95017.1    CM007892    OTG31811.1    X07656    CAA30503.1    KA648745    AFP63374.1    OIVN01000269    SPC77391.1    OIVN01001666    SPC96375.1    OIVN01004379    SPD17029.1    LBMM01012645    KMQ86082.1    OIVN01000036    SPC73022.1    OIVN01004879    SPD19723.1    LSMT01001145    PFX12880.1    AM433482    CAN69340.1    OIVN01005024    SPD20514.1    LBMM01004924    KMQ91985.1    AAZX01023229    JYDS01000421    KRZ07267.1    OIVN01001931    SPC99063.1    ABLF02041793    JXUM01136904    KQ568499    KXJ68982.1    AC129717    AAT85194.1    AM447500    CAN74198.1    OIVN01002247    SPD01987.1    CM003610    KYP61490.1    CM007893    OTG30017.1    OIVN01002904    SPD07378.1    KQ485623    KYP31853.1    AM461850    CAN61435.1    OIVN01000189    SPC75922.1    AM486774    CAN71029.1    OIVN01000404    SPC79669.1    OIVN01006466    SPD33659.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    CM003605    KYP71150.1    AM458081    CAN67882.1    AM443615    CAN76321.1    AM489192    CAN71109.1    AC006248    AAD17409.1    CM003603    KYP77007.1    OIVN01000319    SPC78222.1    OIVN01001130    SPC90232.1   

Proteomes

UP000036403    UP000055024    UP000054681    UP000054924    UP000055048    UP000054776    + More
UP000243006    UP000053240    UP000054673    UP000069940    UP000249989    UP000054630    UP000215914    UP000225706    UP000002358    UP000054805    UP000007819    UP000075243   

PRIDE

Q9ZQE9   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF14244   Retrotran_gag_3
PF13961   DUF4219
PF00098   zf-CCHC
PF03159   XRN_N
PF17846   XRN_M
PF13855   LRR_8
PF03106   WRKY

Interpro

IPR036397   RNaseH_sf        + More
IPR025724   GAG-pre-integrase_dom       
IPR013103   RVT_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR029472   Copia-like_N       
IPR036875   Znf_CCHC_sf       
IPR025314   DUF4219       
IPR004859   Put_53exo       
IPR041412   Xrn1_helical       
IPR027073   5_3_exoribonuclease       
IPR032675   LRR_dom_sf       
IPR036576   WRKY_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003657   WRKY_dom       
IPR036047   F-box-like_dom_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF118290   SSF118290       
SSF81383   SSF81383       

Gene 3D

3.30.420.10     2.20.25.80     3.80.10.10    

ProteinModelPortal

W8C110   W8C8N7   A0A0J7KDR3   A0A0V1GS48   A0A224X581   A0A0V0V098   + More
A0A0V1NJN8   A0A0J7K7M6   A0A0V0T740   A0A0J7KH67   A0A0J7KDV5   A0A0J7KDP1   A0A034WVC8   A0A0V1APE7   W8B6G9   W8AYT4   A0A069DXI1   B6V6Z8   A0A0A1XLZ7   W8BWJ0   A0A0J7KBT5   A0A0K8W4G0   A0A0A1X768   W8ANX7   W8BYI7   A0A1Y3EJJ4   A0A0K8WJW9   A0A0K8U6X2   A0A0K8U6S2   W8AQ86   W8ADM5   A0A0A1WFC7   A0A194RJV9   A0A0V0W368   W8AL23   A0A194RU38   B8YLY4   B8YLY3   B8YLY6   A0A0J7K7B7   B8YLY5   A0A146LH62   A0A182GA29   A0A2N9FQJ1   A0A0V0RWJ3   A0A2N9ETC8   A0A2N9H4V1   Q53ND1   W8BEX4   A0A2N9IGN3   A0A2N9FWL6   A0A251VAZ6   V9H104   T1PKV2   A0A2N9ERS9   A0A2N9GA80   A0A2N9HZ75   A0A0J7K6W1   A0A2N9EE21   A0A2N9I6N4   A0A2B4R8Q4   A5AS37   A0A2N9I8Q5   A0A0J7NHJ8   K7JAW3   A0A0V1H997   A0A2N9GHK9   J9KJ72   A0A182G1G7   Q6AUC7   A5B5N4   A0A2N9GHK3   A0A151T355   A0A251V331   A0A2N9H6B2   A0A151QNH6   A5BJQ3   A0A2N9EM80   A5C9A6   A0A2N9EYI8   A0A2N9JB15   A0A1Y1N3X2   A0A151TVS9   A5BFU1   A5B1S3   A5CBM1   Q9ZQE9   A0A151UCJ8   A0A2N9ETQ8   A0A2N9FSJ8  

PDB

4PA1     E-value=0.0107644,     Score=96

KEGG

101746524    no KO assigned | (RefSeq) switch-associated protein 70-like

GO

GO:0003676   GO:0008270   GO:0015074   GO:0000943   GO:0004527   GO:0003700   GO:0043565   GO:0003964   GO:0004491   GO:0007020   GO:0031122   GO:0003924   GO:0005525   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR11439   PTHR12341  

Subcellular location

Nucleus  

Length:

1332

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.45651

Exp number, first 60 AAs:

0

Total prob of N-in:

0.17424

outside

1  -  1332

 

 

Pi

51.290194

Theta

24.705423

Tajima's D

-1.668543

CLR

191.384953

CSRT

0.0407979601019949

Interpretation

Uncertain