Gene

KWMTBOMO02442

Pre Gene Modal

BGIBMGA013506

Annotation

PREDICTED:_protein_RTF2_homolog_[Plutella_xylostella]

Location

Bomo_Chr5(-):1956598-1958787      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.673

CDS

ATGGGTTGTGATGGCGGTACAATTCCTCGACGCGATGAGCTCGTTCGAATGAAAAAGAAGCCAGAACAGAAAGATAAAGATGCTGAAAGAAGTTTCAAGTGGCGTAATTGTGCGCTCTCGCAGCAAATACTACAAGAACCAATAGTGGCATGCAGTCTTGGAAGACTTTACAGCAAAAGTTCCGTTCTTGAGGCACTACTTGACAAGGAAACTAGGCCAGAATCAATTAATCACATTAAAAATCTGAAGGATATTAAAGATCTGAAACTAGTCAAGAACCCTGCATATGTTCCTACAGACCATACTGATGGGACATTTGATAATGGGAGTGCTCCTTACATCTGCCCTATTAGTGGCTTGGAGATGACTGGAAAATTTCGTTTTGTTTTTCTCTGGAGCTGTGGCTGTGTGCTTGCTGAGAGGGCACTGAAGGAAGTCCGACAGAACCTGTGCCATATGTGTCAGCAACCATTCACCGATAATGACATAGTTGTTCTTAATGGTACAGAGGAAGACATTGAAAAACTGAAAGACAAGATGGCAATTCGAGTATCAAACAGGAAAAACATTAAAAAGAACAAGGCAGAGAAACTGGAAAAGTCCATAATTAAAACTGAAATCAATTCAGGACCATCGACTTCTCAAGATAATCCATGTAAGACAGCAGAGAAGCAGTCAACAGAAGTTAAAAGCGAGATTAAAGTAGAAGCTGGAACAAGTAGTACAAAAGAAATTGAAACAATTCCATTGTCTTTACCAAAATTCAATCCCAACAAACAACCTAGAGGACATTTTGGATCGCAAAAGAGAGCAGCCCCAACTGAACTGGCTCAGGATCCATCATACAAAAAGACAAAGAAAGATTACAGTATTGCAAAAGATCCAAAGGCCACTGATGTTTACAAATCATTATTTACATCACACAAAGATGAGAAGGAACAAGAGAGAGCACATTGGATCACGTACAATCCATTCTACAACTGA

Protein

MGCDGGTIPRRDELVRMKKKPEQKDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKETRPESINHIKNLKDIKDLKLVKNPAYVPTDHTDGTFDNGSAPYICPISGLEMTGKFRFVFLWSCGCVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKATDVYKSLFTSHKDEKEQERAHWITYNPFYN

Uniprot

H9JVE3   A0A2A4JYR6   A0A1E1W920   A0A2W1B8T5   A0A0N1INV7   A0A212FI39   + More
A0A194Q426   S4PY26   A0A2H1W8P8   A0A0L7LT80   B4HWU5   A0A1B0D690   A0A0J9R0C6   A0A182YIK3   B3N545   A0A182R7S5   A0A3B0K6X0   Q29KQ8   A0A1L8DD62   B4GSZ2   Q9VKR2   A0A151WG34   A0A1W4VT28   B4P0T4   A0A0M5IWR3   A0A2M4CS58   A0A182N8M6   B3MJU8   A0A034VPF9   A0A1I8MYU2   A0A0L0BZB5   A0A2Y9D2W4   A0A182I0L8   A0A1S4H377   W8B258   A0A182QF56   B4JE59   A0A1L8DCW7   A0A0K8W9M7   A0A182F4A0   A0A2M4BVB6   A0A182MQJ7   A0A182XB22   U5EYR4   D6W881   B4KKP1   B4MV85   A0A1Q3FB21   B4LSF3   A0A026WQS3   A0A1J1HZ88   A0A0K8TRA2   A0A182PQ35   A0A2M3Z814   A0A1B6JZU4   A0A0L7QMC4   A0A1W4WWE4   A0A1B6MPX8   A0A1B0B904   A0A182JQI2   A0A182WA76   A0A154P3P0   A0A182G2A6   A0A1A9WZX0   A0A1A9XZI7   A0A1B6FRK3   A0A1A9UMJ3   E2C563   A0A1Y1L8M5   A0A195FXH7   A0A2M4ATD3   A0A2J7PT20   A0A158NUF9   E0VGB0   F4X7W2   A0A2R7VR60   A0A0J7K6X2   A0A336KEN4   A0A1S3D368   B0W729   A0A195BSG1   Q17G64   A0A2P8XX25   A0A023F883   A0A1B6CZ21   A0A1A9Z7S6   U4UW63   A0A2A3EBE5   A0A1B0FLR0   A0A069DR06   D3TNK1   E1ZUV0   J3JWU0   A0A195BYE6   A0A232EJL1   T1E1C2   A0A151IVE0   R4G8Q0   A0A087UK81   A0A067REA1  

Pubmed

19121390    28756777    26354079    22118469    23622113    26227816    + More
17994087    22936249    25244985    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25348373    25315136    26108605    12364791    24495485    18362917    19820115    24508170    30249741    26369729    26483478    20798317    28004739    21347285    20566863    21719571    17510324    29403074    25474469    23537049    26334808    20353571    22516182    28648823    24845553   

EMBL

BABH01036029    NWSH01000385    PCG76784.1    GDQN01007599    JAT83455.1    KZ150213    + More
PZC72149.1    KQ460796    KPJ12165.1    AGBW02008434    OWR53411.1    KQ459465    KPJ00293.1    GAIX01004023    JAA88537.1    ODYU01007043    SOQ49451.1    JTDY01000137    KOB78660.1    CH480818    EDW52490.1    AJVK01025836    CM002910    KMY89608.1    CH954177    EDV58990.1    OUUW01000006    SPP81759.1    CH379061    EAL33116.1    GFDF01009777    JAV04307.1    CH479189    EDW25501.1    AE014134    AY069646    AAF52998.1    AAL39791.1    KQ983203    KYQ46767.1    CM000157    EDW87979.1    KRJ97516.1    CP012523    ALC39768.1    GGFL01004008    MBW68186.1    CH902620    EDV32403.1    GAKP01014598    JAC44354.1    JRES01001119    KNC25412.1    APCN01005219    AAAB01008980    GAMC01015442    GAMC01015438    JAB91113.1    AXCN02001856    CH916368    EDW03579.1    GFDF01009776    JAV04308.1    GDHF01004416    JAI47898.1    GGFJ01007803    MBW56944.1    AXCM01000013    GANO01000180    JAB59691.1    KQ971307    EFA10907.1    CH933807    EDW12705.1    CH963857    EDW76430.1    GFDL01010352    JAV24693.1    CH940649    EDW64775.1    KK107128    QOIP01000006    EZA58380.1    RLU21278.1    CVRI01000021    CRK91862.1    GDAI01000945    JAI16658.1    GGFM01003890    MBW24641.1    GECU01034158    GECU01002985    JAS73548.1    JAT04722.1    KQ414894    KOC59772.1    GEBQ01001980    JAT37997.1    JXJN01010177    KQ434809    KZC06555.1    JXUM01138824    KQ568798    KXJ68881.1    GECZ01016959    JAS52810.1    GL452767    EFN76884.1    GEZM01066381    JAV67916.1    KQ981193    KYN45131.1    GGFK01010706    MBW44027.1    NEVH01021921    PNF19483.1    ADTU01026418    DS235135    EEB12416.1    GL888900    EGI57448.1    KK854038    PTY10022.1    LBMM01012629    KMQ86097.1    UFQS01000281    UFQT01000281    SSX02372.1    SSX22747.1    DS231851    EDS37303.1    KQ976417    KYM89955.1    CH477265    EAT45585.1    PYGN01001220    PSN36562.1    GBBI01001235    JAC17477.1    GEDC01018582    JAS18716.1    KB632390    ERL94470.1    KZ288305    PBC28784.1    CCAG010020502    GBGD01002386    JAC86503.1    EZ423003    ADD19279.1    GL434297    EFN75042.1    BT127708    AEE62670.1    KQ978501    KYM93612.1    NNAY01004010    OXU18498.1    GAKT01000024    JAA93038.1    KQ980900    KYN11696.1    ACPB03000223    GAHY01000587    JAA76923.1    KK120208    KFM77770.1    KK852690    KDR18377.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000053268    UP000037510    + More
UP000001292    UP000092462    UP000076408    UP000008711    UP000075900    UP000268350    UP000001819    UP000008744    UP000000803    UP000075809    UP000192221    UP000002282    UP000092553    UP000075884    UP000007801    UP000095301    UP000037069    UP000075903    UP000075840    UP000075886    UP000001070    UP000069272    UP000075883    UP000076407    UP000007266    UP000009192    UP000007798    UP000008792    UP000053097    UP000279307    UP000183832    UP000075885    UP000053825    UP000192223    UP000092460    UP000075881    UP000075920    UP000076502    UP000069940    UP000249989    UP000091820    UP000092443    UP000078200    UP000008237    UP000078541    UP000235965    UP000005205    UP000009046    UP000007755    UP000036403    UP000079169    UP000002320    UP000078540    UP000008820    UP000245037    UP000092445    UP000030742    UP000242457    UP000092444    UP000000311    UP000078542    UP000215335    UP000078492    UP000015103    UP000054359    UP000027135   

PRIDE

H9JVE3    Q9VKR2   

Pfam

PF04641   Rtf2

Interpro

IPR006735   Rtf2        + More
IPR027799   Rtf2_RING-finger       

ProteinModelPortal

H9JVE3   A0A2A4JYR6   A0A1E1W920   A0A2W1B8T5   A0A0N1INV7   A0A212FI39   + More
A0A194Q426   S4PY26   A0A2H1W8P8   A0A0L7LT80   B4HWU5   A0A1B0D690   A0A0J9R0C6   A0A182YIK3   B3N545   A0A182R7S5   A0A3B0K6X0   Q29KQ8   A0A1L8DD62   B4GSZ2   Q9VKR2   A0A151WG34   A0A1W4VT28   B4P0T4   A0A0M5IWR3   A0A2M4CS58   A0A182N8M6   B3MJU8   A0A034VPF9   A0A1I8MYU2   A0A0L0BZB5   A0A2Y9D2W4   A0A182I0L8   A0A1S4H377   W8B258   A0A182QF56   B4JE59   A0A1L8DCW7   A0A0K8W9M7   A0A182F4A0   A0A2M4BVB6   A0A182MQJ7   A0A182XB22   U5EYR4   D6W881   B4KKP1   B4MV85   A0A1Q3FB21   B4LSF3   A0A026WQS3   A0A1J1HZ88   A0A0K8TRA2   A0A182PQ35   A0A2M3Z814   A0A1B6JZU4   A0A0L7QMC4   A0A1W4WWE4   A0A1B6MPX8   A0A1B0B904   A0A182JQI2   A0A182WA76   A0A154P3P0   A0A182G2A6   A0A1A9WZX0   A0A1A9XZI7   A0A1B6FRK3   A0A1A9UMJ3   E2C563   A0A1Y1L8M5   A0A195FXH7   A0A2M4ATD3   A0A2J7PT20   A0A158NUF9   E0VGB0   F4X7W2   A0A2R7VR60   A0A0J7K6X2   A0A336KEN4   A0A1S3D368   B0W729   A0A195BSG1   Q17G64   A0A2P8XX25   A0A023F883   A0A1B6CZ21   A0A1A9Z7S6   U4UW63   A0A2A3EBE5   A0A1B0FLR0   A0A069DR06   D3TNK1   E1ZUV0   J3JWU0   A0A195BYE6   A0A232EJL1   T1E1C2   A0A151IVE0   R4G8Q0   A0A087UK81   A0A067REA1  

KEGG

101739501    no KO assigned | (RefSeq) protein RTF2 homolog

GO

GO:0005634   GO:1902979   GO:0071171  

PANTHER

PTHR12775  

Length:

327

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01001

Exp number, first 60 AAs:

0.00011

Total prob of N-in:

0.01474

outside

1  -  327

 

 

Pi

247.096912

Theta

214.64272

Tajima's D

0.397805

CLR

0.253741

CSRT

0.485825708714564

Interpretation

Uncertain