Silkworm Genome Informatics Database

Gene

KWMTBOMO02440

Pre Gene Modal

BGIBMGA013507

Annotation

PREDICTED:_cyclin_E_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(-):1916325-1936497 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.29

CDS

ATGGCTGAATCTGGGTCTCCCTCTGAAGCCAGTGAAAAGCGCATGACCTTAAAACGTAAAAGAAGCTCTTCTGATGATGAGTTAGAAAACCAGCCTCCACAGAAGATAGCCTCAACCCTTGATGAACAATTATGTGATCAACCAGCGCTTCATGTTGTGGTAGAATCATCATCATGCTCAAGCGATGATGAAGGCTCTCAATATGGGAACAGTGATCAACCAAGGAGTGTTTATACAGACATTGATTACAACCCTGACAGCTTTCTGAGCCCACCTAGTGTTTCTGATCTGCCCAACAGCGTACTGAGCCCCTTAGAAAATGTGGCCAGAGGCGAGTCCACCCCACACTCTAATAAAAGGGCTAATGCTAGTAAGCCTCCATGCCCTACACCTCCAAAACGCAAATGTCCCTTGCCTGGATTGTCTTGGGCTGATCCTGCTGATGTCTGGAACAGCATGTGCGAGTGTGATGCCAGGTCCAGCAAGAAGAAGAACCCTAACATGTTTGACAATCATCCTAATCTTCAGCCCCGGATGAGAGCTATTTTACTGGACTGGCTAAATGAGGTCTGCGAGGTATACAAATTACACAGAGAAACGTTTCATCTGACAGTGGACTACGTAGACAGATACTTATCGAATACAGAAGACGTACAGAAAGGGAGACTGCAACTTATAGGTATAACGTGTTTATTCATAGCGGCTAAAGTGGAAGAGGTATATCCGCCGAAAATAGCAGAGTTTGCTTACGTCACCGACGGAGCCTGCACGACCGAGGAAATACTTCTGGAAGAACTTCTAATTCTCAAGATTCTCTCGTGGAGCATCACACCAATAACCATCAACAGCTGGCTGAACGTGTACATGCAGCTAGCCAGCGAAGGGAAATCTGCCAAGAGAAGGCTGCTAGGCGAGAGTGATGTGGCCGCGAACGCTTTAAGAGGGTACACATTCGTGTTCCCTCAGTACTCGTCATTAGAGTTTGTGATATGTGGACAATTAGTGGACTTGGCTGTTTTACATGTGGACGTTAATTTGTTCTCGTACAGTGCTGTCGCGGCGGCGGCTATAGCGCATACGTACAACAGGGAGCTGGCGATGAGGGTCTCAGGTTACAAGTGGGAGTCCCTGTCGGAGTGCTACACGTGGCTGGAGCCGTTCGCGCGGTCGCTGCGCGAGGCGGGCGCGGGCGGGCAGGTGCGCGCCGCCGACGGGGAGTTCGTGCAGCCCGCCGCCGCGCTGCGACACATCTGTCCCGACATCAACCCCGACGAGAGCCACCGCATCCAGCAGCACAACGTCACGCTCGACATGTTTGATAAAGTTTACCAAGCCATATTAGAGCATTCATCACAACATGACGTCTGCCCATCAACATCGGTAGACACGGACCACATATACCCGCCGACCCCTCCGCACTCCGACCACAAAAGCCCCAAGACTCCCACTACAAAGACTCCGTCGAACAGGCATGAACACGAACTAAGGATACATGCTGACTGA

Protein

MAESGSPSEASEKRMTLKRKRSSSDDELENQPPQKIASTLDEQLCDQPALHVVVESSSCSSDDEGSQYGNSDQPRSVYTDIDYNPDSFLSPPSVSDLPNSVLSPLENVARGESTPHSNKRANASKPPCPTPPKRKCPLPGLSWADPADVWNSMCECDARSSKKKNPNMFDNHPNLQPRMRAILLDWLNEVCEVYKLHRETFHLTVDYVDRYLSNTEDVQKGRLQLIGITCLFIAAKVEEVYPPKIAEFAYVTDGACTTEEILLEELLILKILSWSITPITINSWLNVYMQLASEGKSAKRRLLGESDVAANALRGYTFVFPQYSSLEFVICGQLVDLAVLHVDVNLFSYSAVAAAAIAHTYNRELAMRVSGYKWESLSECYTWLEPFARSLREAGAGGQVRAADGEFVQPAAALRHICPDINPDESHRIQQHNVTLDMFDKVYQAILEHSSQHDVCPSTSVDTDHIYPPTPPHSDHKSPKTPTTKTPSNRHEHELRIHAD

Similarity

Belongs to the cyclin family.

Uniprot

A0A2S1ZNV3 E5Q8K3 B6ZL90 A0A2A4JYA4 A0A2H1W8V9 A0A2W1BCL4 + More
T1RK24 E5Q8K5 E5Q8K0 A0A194Q5L2 A0A0N1IGJ4 A0A0L7LT83 A0A182W6W7 A0A0P6IME6 K7J9K6 A0A232FBU7 Q16WX3 B4KKY0

Pubmed

19121390 28756777 26354079 26227816 20075255 28648823 + More
17510324 17994087 18057021

EMBL

MF352003 AWK27027.1 HQ619696 ADR30029.1 BABH01036032 BABH01036033 + More
BABH01036034 AB457002 BAG85355.2 NWSH01000385 PCG76789.1 ODYU01007043 SOQ49453.1 KZ150213 PZC72151.1 JX502019 AGJ03628.1 HQ619698 ADR30031.1 HQ619693 ADR30026.1 KQ459465 KPJ00295.1 KQ460796 KPJ12168.1 JTDY01000137 KOB78665.1 GDIQ01002174 JAN92563.1 AAZX01006880 NNAY01000537 OXU27807.1 CH477551 EAT39115.1 CH933807 EDW11710.2 KRG02857.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000037510 UP000075920 + More
UP000002358 UP000215335 UP000008820 UP000009192

PRIDE

E5Q8K3 B6ZL90 E5Q8K5 E5Q8K0

Pfam

PF02984 Cyclin_C + More
PF00134 Cyclin_N

Interpro

IPR013763   Cyclin-like        + More
IPR006671   Cyclin_N
IPR039361   Cyclin
IPR036915   Cyclin-like_sf
IPR004367   Cyclin_C-dom

SUPFAM

SSF47954 SSF47954

CDD

cd00043 CYCLIN

ProteinModelPortal

A0A2S1ZNV3 E5Q8K3 B6ZL90 A0A2A4JYA4 A0A2H1W8V9 A0A2W1BCL4 + More
T1RK24 E5Q8K5 E5Q8K0 A0A194Q5L2 A0A0N1IGJ4 A0A0L7LT83 A0A182W6W7 A0A0P6IME6 K7J9K6 A0A232FBU7 Q16WX3 B4KKY0

PDB

1W98 E-value=2.1805e-59, Score=581

KEGG

100216493 K06626 G1/S-specific cyclin-E1 | (RefSeq) Cyce; cyclin E

PATHWAY

04391 Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0005634 GO:0007017 GO:0000930 GO:0007020 GO:0031122 GO:0003924 GO:0005525 GO:0004518 GO:0006281 GO:0048384

PANTHER

PTHR10177

Length:

500

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.30296

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00121

outside

1 - 500

Pi

180.779446

Theta

17.931008

Tajima's D

0.015737

CLR

0.517483

CSRT

0.370281485925704

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics