Gene

KWMTBOMO02437  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013500

Annotation

PREDICTED:_tubulin_gamma-1_chain_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr5(+):1881178-1887437      View in EpiBrowser

Full name

Tubulin gamma chain      

Location in the cell

Cytoplasmic   Reliability : 1.522 Nuclear   Reliability : 1.4

CDS

ATGCCGAGTGAAATGATAACGTTACAATTAGGTCAGTGCGGAAACCAAATTGGCTTCGAATTTTGGAAACAGTTGTGTATTGAGCACGGAATATCGCCTGAAGGCATATTAGAAGAGTTTGCATCGGCGGGATCTGATCGTAAAGATGTGTTTTTCTATCAAGCTGATGATGATCACTACATACCACGAGCAGTTCTGCTGGATTTGGAGCCGCGTGTTATACACACGATTATGAATTCACCCTATGCTAAATTGTACAATCCTGAGAATGTGTATCTATCTAAACATGGTGGGGGTGCAGGGAACAACTGGGCTTCAGGATATGCTCAGGGGGAGAAATTGAATGAGGAAGTATTTGATATAATCAACAGAGAGGCTGATGGGAGTGATAACCTTGAGGGCTTTGTTTTATGTCACTCAATAGCAGGAGGTACAGGTTCAGGGATGGGCTCATATATACTGGAACACCTGTCTGATAGGTTTCCTAAGAAACTTGTTCAGACATACAGTGTCTTCCCAAACTTAGATGAAATAAGTGATGTCGTAGTTCAGCCATACAACTCTTTGTTAACTTTGAAACGTCTCACTGAGAGTGCAGACTGCGTGATGGTTCTGGATAATACAGCATTGAATCGCATTGCCAGTGACCGCCTCCACATACAGAACCCATCATTTGCACAGATCAACACGCTTGTGTCTACTATTATGAGTGCAAGCACTGCTACCTTGAGGTATCCGTCATACATGAACAATGACCTGATCAGTCTGGTGGCGCCGTTGATTCCTACCCCTCGACTGCACTTCCTCATGACTGGGTACACGCCCCTCTCTGCCGATCACGAACAAACCGCAGCTCCGAAAATTCGCAAAACGACAGTACTAGACGTGATGCAGCGGCTGTTACAGCCCAAGAACATGATGGTGTCGCTCAGTCCGGACAGGGCCAACCAACACTGCTACATATCCATACTGAACATTATACAGGGCGAGGTGGAGCCGTCGCAGGTGCACAAGTCGCTGCAGCGCATCCGCGAGCGGCGCCTGGCCGCCTTCATCCCGTGGGGGCCGGCGTCCGTGCAGGTGGCGCTCTCGCGGCGCTCGCCCCACGTCACGGCCGCGCACAAGGTGTCGGGCCTGCTGCTCGCCAACCACACCAACATCTCCTCGCTGTTCGATCGATGTCTGCAACAATTCGACAAGCTGCGCAAGCGCGAAGCGTTCCTGGAGGTGTTCCGCAAGGAGCCCATGTTCCGCGAGTCGCTGGACGAGCTGGACGCGTCGCGCGGCGTGGTGGACGAGCTGGTGCACGAGTACCGCGCCGCCGCCACGCCCGACTACGTGCACTGGAACCCAGAGAGCAGCCAAATATAA

Protein

MPSEMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGYAQGEKLNEEVFDIINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRFPKKLVQTYSVFPNLDEISDVVVQPYNSLLTLKRLTESADCVMVLDNTALNRIASDRLHIQNPSFAQINTLVSTIMSASTATLRYPSYMNNDLISLVAPLIPTPRLHFLMTGYTPLSADHEQTAAPKIRKTTVLDVMQRLLQPKNMMVSLSPDRANQHCYISILNIIQGEVEPSQVHKSLQRIRERRLAAFIPWGPASVQVALSRRSPHVTAAHKVSGLLLANHTNISSLFDRCLQQFDKLRKREAFLEVFRKEPMFRESLDELDASRGVVDELVHEYRAAATPDYVHWNPESSQI

Description

Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.

Similarity

Belongs to the tubulin family.

Uniprot

H9JVD7   A0A212FIP9   I6QWU7   A0A2W1BEK8   A0A2A4JKN7   A0A194Q432   + More
A0A2H1W935   A0A0N1IF23   A0A2J7RF71   A0A2P8YPR3   A0A067QPX0   A0A1B6GBR2   A0A1B6J028   A0A109X2U3   A0A026WWQ6   E2C810   A0A088ACY5   A0A232EVW5   K7J3Z7   A0A1B6MUZ4   A0A1I8MAM7   E2ALA5   A0A1I8PD11   A0A1B6EER3   A0A2A3EDB3   A0A1B0G050   A0A1A9X860   A0A1A9V1B2   A0A1B0C0U7   W8BH57   A0A034WDY8   A0A0A1XAQ7   A0A1B0A890   A0A151X913   A0A154P1Z4   A0A0K8VUK5   A0A1A9WX71   A0A195DG20   F4X3G1   A0A195BN07   A0A0L0BUU6   A0A0M8ZX44   T1J8H8   A0A0T6B4X7   L7MG17   A0A0N7ZCQ0   A0A1W4XK49   A0A131YK16   A0A336MF51   A0A224Z2I4   T1DFW8   A0A1Y1LC01   A0A139WGB3   A0A341BBY5   A0A2Y9M2I4   A0A0P5BGR6   A0A384CYG3   A0A2Y9EBR6   A0A2Y9GIW2   A0A2U3Y4I1   M3WFJ4   A0A2U3WNF9   M3YFK7   A0A2Y9JWS4   G3SLI6   D2HIU4   E2RD85   E9HIY1   A0A2K5DKL0   A0A2R8MIK0   A0A164YNI4   G1PA44   A0A341BHF8   A0A287BRH5   F6RCT5   A0A340WS78   A0A2Y9EIE8   A0A2Y9M8N1   A0A212D9N4   A0A383ZSD4   H9YXX1   K7D559   A0A0P6DFB8   A0A3N0YT63   Q7ZVM5   A0A384CYE8   D2HIU3   F1PCT3   A0A2K5DKK4   A0A2Y9GE46   A0A2U3Y4I0   A0A341ZMI1   A0A1U7T264   A0A2U3WNG3   A0A2Y9JXJ7   A0A2R8NC98   H9ENY0   A0A1I8QA22   A0A131XGN2   A0A3B3Q402  

Pubmed

19121390    22118469    28756777    26354079    29403074    24845553    + More
26826390    24508170    30249741    20798317    28648823    20075255    25315136    24495485    25348373    25830018    21719571    26108605    25576852    26830274    28797301    28004739    18362917    19820115    24813606    17975172    20010809    16341006    21292972    25243066    21993624    30723633    19892987    25319552    23594743    17431167    28049606    29240929   

EMBL

BABH01036042    AGBW02008342    OWR53614.1    JQ653042    AFM38215.1    KZ150213    + More
PZC72154.1    NWSH01001095    PCG72645.1    KQ459465    KPJ00298.1    ODYU01007043    SOQ49456.1    KQ460796    KPJ12171.1    NEVH01004413    PNF39467.1    PYGN01000445    PSN46247.1    KK853682    KDQ97903.1    GECZ01009905    JAS59864.1    GECU01015165    JAS92541.1    KU194647    ALP82111.1    KK107078    QOIP01000011    EZA60492.1    RLU16829.1    GL453506    EFN75928.1    NNAY01001960    OXU22451.1    AAZX01000987    GEBQ01000221    JAT39756.1    GL440570    EFN65784.1    GEDC01000879    JAS36419.1    KZ288285    PBC29474.1    CCAG010002366    JXJN01023761    GAMC01005945    JAC00611.1    GAKP01005196    JAC53756.1    GBXI01006085    JAD08207.1    KQ982409    KYQ56819.1    KQ434787    KZC05344.1    GDHF01009753    JAI42561.1    KQ980886    KYN11838.1    GL888613    EGI58989.1    KQ976439    KYM86710.1    JRES01001424    KNC22989.1    KQ435811    KOX72895.1    JH431954    LJIG01009808    KRT82340.1    GACK01002099    JAA62935.1    GDRN01062523    JAI65064.1    GEDV01010151    JAP78406.1    UFQT01001034    SSX28560.1    GFPF01012920    MAA24066.1    GAKT01000101    JAA92961.1    GEZM01065044    JAV68577.1    KQ971348    KYB26929.1    GDIP01184890    JAJ38512.1    AANG04000144    AEYP01079436    AEYP01079437    AEYP01079438    AEYP01079439    AEYP01079440    ACTA01012011    GL192892    EFB20130.1    AAEX03006445    AAEX03006446    GL732658    EFX68289.1    GAMQ01002408    GAMQ01002405    GAMQ01002404    GAMP01001207    JAB39443.1    JAB51548.1    LRGB01000871    KZS15440.1    AAPE02024557    AEMK02000080    DQIR01066224    DQIR01067230    DQIR01070835    DQIR01071652    DQIR01071653    DQIR01071654    DQIR01082821    DQIR01082823    DQIR01082825    DQIR01082826    DQIR01082828    DQIR01082829    DQIR01084760    DQIR01086537    DQIR01087783    DQIR01100322    DQIR01103427    DQIR01104359    DQIR01115575    DQIR01115576    DQIR01115577    DQIR01115578    DQIR01115579    DQIR01117673    DQIR01117674    DQIR01122066    DQIR01122067    DQIR01123051    DQIR01124488    DQIR01137955    DQIR01137958    DQIR01199286    DQIR01199288    DQIR01204324    DQIR01204325    HDA21700.1    MKHE01000005    OWK14969.1    JU471733    JV046772    AFH28537.1    AFI36843.1    GABC01002161    GABF01006853    GABD01008541    GABE01009765    JAA09177.1    JAA15292.1    JAA24559.1    JAA34974.1    GDIQ01078159    JAN16578.1    RJVU01026577    ROL49389.1    CT573704    BC045486    AAH45486.1    EFB20129.1    GAMQ01002406    GAMP01001208    GAMP01001206    GAMP01001204    JAB39445.1    JAB51547.1    JSUE03016883    JSUE03016884    JSUE03016885    JSUE03016886    JSUE03016887    JU320333    AFE64089.1    GEFH01002864    JAP65717.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000235965    + More
UP000245037    UP000027135    UP000053097    UP000279307    UP000008237    UP000005203    UP000215335    UP000002358    UP000095301    UP000000311    UP000095300    UP000242457    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000075809    UP000076502    UP000091820    UP000078492    UP000007755    UP000078540    UP000037069    UP000053105    UP000192223    UP000007266    UP000252040    UP000248483    UP000261680    UP000291021    UP000248480    UP000248481    UP000245341    UP000011712    UP000245340    UP000000715    UP000248482    UP000007646    UP000008912    UP000002254    UP000000305    UP000233020    UP000008225    UP000076858    UP000001074    UP000008227    UP000002281    UP000265300    UP000261681    UP000000437    UP000189704    UP000006718    UP000261540   

PRIDE

H9JVD7   

Pfam

PF00091   Tubulin        + More
PF03953   Tubulin_C

Interpro

IPR017975   Tubulin_CS        + More
IPR008280   Tub_FtsZ_C       
IPR003008   Tubulin_FtsZ_GTPase       
IPR037103   Tubulin/FtsZ_C_sf       
IPR023123   Tubulin_C       
IPR018316   Tubulin/FtsZ_2-layer-sand-dom       
IPR000217   Tubulin       
IPR036525   Tubulin/FtsZ_GTPase_sf       
IPR002454   Gamma_tubulin       

SUPFAM

SSF52490   SSF52490        + More
SSF55307   SSF55307       

Gene 3D

1.10.287.600     3.30.1330.20     3.40.50.1440    

CDD

cd02188  gamma_tubulin

ProteinModelPortal

H9JVD7   A0A212FIP9   I6QWU7   A0A2W1BEK8   A0A2A4JKN7   A0A194Q432   + More
A0A2H1W935   A0A0N1IF23   A0A2J7RF71   A0A2P8YPR3   A0A067QPX0   A0A1B6GBR2   A0A1B6J028   A0A109X2U3   A0A026WWQ6   E2C810   A0A088ACY5   A0A232EVW5   K7J3Z7   A0A1B6MUZ4   A0A1I8MAM7   E2ALA5   A0A1I8PD11   A0A1B6EER3   A0A2A3EDB3   A0A1B0G050   A0A1A9X860   A0A1A9V1B2   A0A1B0C0U7   W8BH57   A0A034WDY8   A0A0A1XAQ7   A0A1B0A890   A0A151X913   A0A154P1Z4   A0A0K8VUK5   A0A1A9WX71   A0A195DG20   F4X3G1   A0A195BN07   A0A0L0BUU6   A0A0M8ZX44   T1J8H8   A0A0T6B4X7   L7MG17   A0A0N7ZCQ0   A0A1W4XK49   A0A131YK16   A0A336MF51   A0A224Z2I4   T1DFW8   A0A1Y1LC01   A0A139WGB3   A0A341BBY5   A0A2Y9M2I4   A0A0P5BGR6   A0A384CYG3   A0A2Y9EBR6   A0A2Y9GIW2   A0A2U3Y4I1   M3WFJ4   A0A2U3WNF9   M3YFK7   A0A2Y9JWS4   G3SLI6   D2HIU4   E2RD85   E9HIY1   A0A2K5DKL0   A0A2R8MIK0   A0A164YNI4   G1PA44   A0A341BHF8   A0A287BRH5   F6RCT5   A0A340WS78   A0A2Y9EIE8   A0A2Y9M8N1   A0A212D9N4   A0A383ZSD4   H9YXX1   K7D559   A0A0P6DFB8   A0A3N0YT63   Q7ZVM5   A0A384CYE8   D2HIU3   F1PCT3   A0A2K5DKK4   A0A2Y9GE46   A0A2U3Y4I0   A0A341ZMI1   A0A1U7T264   A0A2U3WNG3   A0A2Y9JXJ7   A0A2R8NC98   H9ENY0   A0A1I8QA22   A0A131XGN2   A0A3B3Q402  

PDB

1Z5W     E-value=0,     Score=1974

KEGG

101739639    K10389 tubulin gamma | (RefSeq) tubulin gamma-1 chain

GO

GO:0005525   GO:0007020   GO:0000930   GO:0031122   GO:0005874   GO:0003924   GO:0005881   GO:0005876   GO:0000242   GO:0007052   GO:0005200   GO:0005634   GO:0005819   GO:0005737   GO:0005813   GO:0000212   GO:0000278   GO:0000070   GO:0007017   GO:0000226   GO:0031252   GO:0036064   GO:0045177   GO:0097730   GO:0005814   GO:0042802   GO:0055037   GO:0000794   GO:0005827   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR11588  

Length:

456

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0304599999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00199

outside

1  -  456

 

 

Pi

212.790391

Theta

177.853271

Tajima's D

0.24265

CLR

0.800685

CSRT

0.44222788860557

Interpretation

Uncertain