Gene

KWMTBOMO02434  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013499

Annotation

putative_cop9_signalosome_complex_subunit_[Danaus_plexippus]

Location

Bomo_Chr5(+):1858408-1862355      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.43

CDS

ATGTCTGATAACGATGACGATTATATGTGTGATGAGGAAGAAGACTATGGCTTGGAATATTCAGAAGACAGTAATTCAGAACCAGATGTGGACCTCGAAAACCAGTACTACAATAGCAAAGCACTGAAAGAAGATGTACCACAAGCGGCATTACTCAGTTTCCAGAAGGTTTTAGAGCTAGAAGGTGGAGATAAAGGGGAATGGGGATTCAAAGCTCTCAAACAAATGATCAAAATTAATTTTAAGCTAAGTAACTTTACAGAAATGATGGCGAGGTATAAACAACTCTTAACATACATTAAAAGTGCCGTCACTAGGAATCATTCGGAAAAATCTATCAATTCAATTTTAGATTACATCTCTACATCTAGGAATATGGAATTATTACAAGACTTTTATGAAACAACATTAGAAGCATTGAAAGATGCAAAGAATGATAGGCTCTGGTTTAAGACCAACACTAAACTTGGGAAATTGTATTATGACAGAGGAGATTTCAACAAGCTAGCAAAAATATTGAAACAACTACATCAGAGTTGTCAGACTGATGAAGGTGAAGATGATCTCAAGAAAGGAACGCAACTACTAGAAATATATGCTCTTGAGATACAAATGTATACTGCACAAAAGAACAATAAGAAATTAAAAGCATTATACGAACAGTCCCTACACATAAAATCGGCAATACCACATCCACTCATCATGGGTGTCATCAGAGAATGCGGCGGCAAAATGCACCTTCGTGAGGGAGAATTTGAGAAAGCGCACACAGACTTCTTCGAGGCGTTCAAGAACTATGACGAGTCCGGGAGTCCGAGGCGGACCACGTGTCTGAAATATTTAGTTTTAGCTAATATGTTGATGAAATCCGGCATAAACCCATTCGATTCCCAAGAAGCGAAGCCGTACAAGAACGATCCCGAGATCCTCGCCATGACCAACCTGGTGATGGCCTACCAGAACAACGACATTAATGAATTCGAATCCATACTCAAACATAATAGGAATAACATAATGGATGATCCGTTTATCCGGGAACACATAGAGGACCTGCTGAGGAACATCAGAACTCAGGTACTGATCAAACTGATCGGGCCTTACACCAGGATCCACATACCGTTCATATCCAAGGAGCTTAATATTGATGAGAAGGAAGTTGAGAATTTACTTGTCACATGTATTCTGGATAAGTGA

Protein

MSDNDDDYMCDEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDVPQAALLSFQKVLELEGGDKGEWGFKALKQMIKINFKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVMAYQNNDINEFESILKHNRNNIMDDPFIREHIEDLLRNIRTQVLIKLIGPYTRIHIPFISKELNIDEKEVENLLVTCILDK

Uniprot

H9JVD6   A0A2H1W8R0   A0A212FIR0   A0A0N1I8D4   A0A194Q5L8   A0A2A4JLQ8   + More
A0A1E1WUS3   A0A1E1WJP1   A0A2J7R3V4   A0A026WQJ2   A0A1B6EVV7   E2BU30   A0A1B6K2V2   A0A067QUI0   E2AUH0   A0A0C9RGN9   K7IX27   E9IYL3   A0A154PLS8   A0A151IWT9   A0A151HY86   A0A2A3ETD5   A0A088AJ83   A0A158P0N4   A0A151WVP0   A0A232FFT1   A0A0L7RBV9   N6TIN0   A0A1B6DTT0   D6W6G1   A0A1D2MJL4   A0A310SFJ7   A0A1Y1MCL8   A0A0A9XMN5   A0A1W4WZM0   A0A1B0DDX4   A0A1L8DW73   A0A0P4WTL1   A0A1B0CQW7   F4X7N4   A0A0K8TTK8   A0A224XNI5   A0A0P4VMJ0   A0A0V0G574   T1I689   A0A069DU30   A0A1S3I3A4   A0A182P6G4   A0A0P6BK43   A0A2R7WAF5   A0A226EUJ1   A0A0P5NG26   A0A0P5K4U9   A0A0P5YAR2   A0A0P5M4M3   E9H1V3   A0A182MJB5   A0A182V7E8   A0A182X5Z6   Q7PPL9   A0A182RK87   A0A182IBM8   A0A0P5IMB6   A0A164MVH1   A0A182WFK1   A0A182YQH5   E0W2I2   A0A182NTC5   A0A182QQU9   A0A182TRN0   Q178X3   A0A084VFF2   A0A0L0CMJ7   A0A2M3Z6J5   A0A2M4ABM3   A0A2M4BN06   W5JRQ5   A0A182F0U3   A0A1J1IK73   A0A210QGP7   A0A182G220   A0A1A9XWS4   A0A1A9UNM1   A0A1Q3G1X7   A0A1S4JU82   A0A1A9ZHP2   A0A1B0BP35   D3TRS7   A0A182GAV5   B0WUR0   A0A023ERT2   U5EV51   A0A2T7NE13   A0A182KGQ3   V4B4Y1   A0A0P6HCQ2   A0A336MMN1   K1Q5I4   A0A1I8P4P0   S4R8J4  

Pubmed

19121390    22118469    26354079    24508170    30249741    20798317    + More
24845553    20075255    21282665    21347285    28648823    23537049    18362917    19820115    27289101    28004739    25401762    26823975    21719571    26369729    27129103    26334808    21292972    12364791    14747013    17210077    25244985    20566863    17510324    24438588    26108605    20920257    23761445    28812685    26483478    20353571    24945155    23254933    22992520   

EMBL

BABH01036043    ODYU01007043    SOQ49458.1    AGBW02008342    OWR53616.1    KQ460796    + More
KPJ12173.1    KQ459465    KPJ00300.1    NWSH01001095    PCG72648.1    GDQN01000340    JAT90714.1    GDQN01003824    JAT87230.1    NEVH01007818    PNF35518.1    KK107138    QOIP01000002    EZA57951.1    RLU25998.1    GECZ01027768    JAS42001.1    GL450575    EFN80804.1    GECU01001930    JAT05777.1    KK852921    KDR13780.1    GL442820    EFN62929.1    GBYB01006191    JAG75958.1    AAZX01000599    GL767018    EFZ14338.1    KQ434977    KZC12835.1    KQ980845    KYN12270.1    KQ976726    KYM76508.1    KZ288185    PBC34967.1    ADTU01005572    KQ982691    KYQ51999.1    NNAY01000275    OXU29562.1    KQ414617    KOC68241.1    APGK01024794    KB740562    KB632399    ENN80294.1    ERL94804.1    GEDC01008214    JAS29084.1    KQ971307    EFA11066.1    LJIJ01001058    ODM93163.1    KQ761844    OAD56592.1    GEZM01035230    JAV83331.1    GBHO01022386    GBHO01022385    GBRD01008026    GDHC01017449    JAG21218.1    JAG21219.1    JAG57795.1    JAQ01180.1    AJVK01005512    AJVK01005513    GFDF01003393    JAV10691.1    GDRN01006572    JAI67955.1    AJWK01024152    AJWK01024153    AJWK01024154    AJWK01024155    GL888862    EGI57563.1    GDAI01000328    JAI17275.1    GFTR01006284    JAW10142.1    GDKW01000834    JAI55761.1    GECL01002906    JAP03218.1    ACPB03014449    GBGD01001474    JAC87415.1    GDIP01021466    JAM82249.1    KK854536    PTY16664.1    LNIX01000002    OXA61189.1    GDIQ01142934    JAL08792.1    GDIQ01215257    JAK36468.1    GDIP01060400    JAM43315.1    GDIQ01160680    JAK91045.1    GL732584    EFX74239.1    AXCM01005597    AAAB01008944    EAA10217.2    APCN01000711    GDIQ01210697    JAK41028.1    LRGB01002937    KZS05402.1    AAZO01007228    DS235878    EEB19838.1    AXCN02000715    CH477357    EAT42769.1    ATLV01012386    KE524787    KFB36696.1    JRES01000175    KNC33578.1    GGFM01003374    MBW24125.1    GGFK01004838    MBW38159.1    GGFJ01005328    MBW54469.1    ADMH02000293    ETN67092.1    CVRI01000054    CRL00639.1    NEDP02003748    OWF47918.1    JXUM01006532    JXUM01006533    KQ560217    KXJ83774.1    GFDL01001245    JAV33800.1    JXJN01017801    JXJN01025599    CCAG010008393    EZ424129    ADD20405.1    JXUM01051583    JXUM01051584    KQ561695    KXJ77785.1    DS232108    EDS35046.1    GAPW01001700    JAC11898.1    GANO01001178    JAB58693.1    PZQS01000013    PVD19413.1    KB199650    ESP05558.1    GDIQ01021385    JAN73352.1    UFQT01001396    SSX30349.1    JH817795    EKC31877.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000218220    UP000235965    + More
UP000053097    UP000279307    UP000008237    UP000027135    UP000000311    UP000002358    UP000076502    UP000078492    UP000078540    UP000242457    UP000005203    UP000005205    UP000075809    UP000215335    UP000053825    UP000019118    UP000030742    UP000007266    UP000094527    UP000192223    UP000092462    UP000092461    UP000007755    UP000015103    UP000085678    UP000075885    UP000198287    UP000000305    UP000075883    UP000075903    UP000076407    UP000007062    UP000075900    UP000075840    UP000076858    UP000075920    UP000076408    UP000009046    UP000075884    UP000075886    UP000075902    UP000008820    UP000030765    UP000037069    UP000000673    UP000069272    UP000183832    UP000242188    UP000069940    UP000249989    UP000092443    UP000078200    UP000092445    UP000092460    UP000092444    UP000002320    UP000245119    UP000075881    UP000030746    UP000005408    UP000095300    UP000245300   

PRIDE

H9JVD6   

Pfam

PF01399   PCI        + More
PF13855   LRR_8

Interpro

IPR037750   COPS2        + More
IPR000717   PCI_dom       
IPR036390   WH_DNA-bd_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR032675   LRR_dom_sf       
IPR000483   Cys-rich_flank_reg_C       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       

SUPFAM

SSF46785   SSF46785        + More
SSF48452   SSF48452       

Gene 3D

3.80.10.10    

ProteinModelPortal

H9JVD6   A0A2H1W8R0   A0A212FIR0   A0A0N1I8D4   A0A194Q5L8   A0A2A4JLQ8   + More
A0A1E1WUS3   A0A1E1WJP1   A0A2J7R3V4   A0A026WQJ2   A0A1B6EVV7   E2BU30   A0A1B6K2V2   A0A067QUI0   E2AUH0   A0A0C9RGN9   K7IX27   E9IYL3   A0A154PLS8   A0A151IWT9   A0A151HY86   A0A2A3ETD5   A0A088AJ83   A0A158P0N4   A0A151WVP0   A0A232FFT1   A0A0L7RBV9   N6TIN0   A0A1B6DTT0   D6W6G1   A0A1D2MJL4   A0A310SFJ7   A0A1Y1MCL8   A0A0A9XMN5   A0A1W4WZM0   A0A1B0DDX4   A0A1L8DW73   A0A0P4WTL1   A0A1B0CQW7   F4X7N4   A0A0K8TTK8   A0A224XNI5   A0A0P4VMJ0   A0A0V0G574   T1I689   A0A069DU30   A0A1S3I3A4   A0A182P6G4   A0A0P6BK43   A0A2R7WAF5   A0A226EUJ1   A0A0P5NG26   A0A0P5K4U9   A0A0P5YAR2   A0A0P5M4M3   E9H1V3   A0A182MJB5   A0A182V7E8   A0A182X5Z6   Q7PPL9   A0A182RK87   A0A182IBM8   A0A0P5IMB6   A0A164MVH1   A0A182WFK1   A0A182YQH5   E0W2I2   A0A182NTC5   A0A182QQU9   A0A182TRN0   Q178X3   A0A084VFF2   A0A0L0CMJ7   A0A2M3Z6J5   A0A2M4ABM3   A0A2M4BN06   W5JRQ5   A0A182F0U3   A0A1J1IK73   A0A210QGP7   A0A182G220   A0A1A9XWS4   A0A1A9UNM1   A0A1Q3G1X7   A0A1S4JU82   A0A1A9ZHP2   A0A1B0BP35   D3TRS7   A0A182GAV5   B0WUR0   A0A023ERT2   U5EV51   A0A2T7NE13   A0A182KGQ3   V4B4Y1   A0A0P6HCQ2   A0A336MMN1   K1Q5I4   A0A1I8P4P0   S4R8J4  

PDB

4WSN     E-value=0,     Score=1671

KEGG

101740323    K12176 COP9 signalosome complex subunit 2 | (RefSeq) COP9 signalosome complex subunit 2

GO

GO:0008180   GO:0005737   GO:0003714   GO:0045892   GO:0005515   GO:0016491   GO:0016021   GO:0004175   GO:0005089   GO:0035023   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR10678:SF3  

Subcellular location

Cytoplasm  

Length:

397

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00216

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02331

outside

1  -  397

 

 

Pi

201.50069

Theta

181.757278

Tajima's D

0.284593

CLR

0.070261

CSRT

0.454077296135193

Interpretation

Uncertain