Gene

KWMTBOMO02432  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013498

Annotation

PREDICTED:_dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_2_[Plutella_xylostella]

Location

Bomo_Chr5(+):1836668-1844065      View in EpiBrowser

Full name

XK-related protein      

Location in the cell

Peroxisomal   Reliability : 1.07

CDS

ATGTACTTTCGAGTACAATTGCTCATCTTAGTGAGTATAGCAGTAAGTAATGCCAACATTCTCCAAGGCACTGTGGATATCAATCGCCTTCAAACCATACTTAAAGACAACTTAAAGAGCAAAGATGTGGGCACCCTGTATTATGCTGTTCGAGGATTGAAACAGTTGAAAGCTGATGTGCCAAATATTTGTGAGGACCTCAAAACGATAAAGTATGATGTCAAGAACTTAGAGCAAGTGTTTTACCTCACAAACTTGGCCCTTCTTACAAACTGTCAGAATTCACTCAAGCCTGAAGTATTGGCGACTCCAACCCAAGCACTAGACAAAAAGGATGTCACCATACAGGAACTGTACTTAGCTGTGTATACACTAAAAGCTCTTGGTAAAGGAACTATTTATGATAAAGAGGATGCTTTAAAAAATCTTATTCAGCTGCTGAAAAAGGATGACACACCTGCCAATTATGGTTATGTATTTGCATTATGTGAGCACATGGGCTGTGGGCTATGGACAACTTCGCATGCTGAAGGAGTTATACTTGCTGCTGATGAGACAGACTCTCGTGCCTTACATTTTGAAGGAGGCCTACCTGTCACATCACAACTTTTGACTACAATAACCAGGACATACAAAGCTCAAAAGAAGCCGACGCCATTCACGGAGGAGCAACGGTACAAGTTCGCCGAGTACCTGTTGTCGCGTCGGTCCGTCAACACCGCCAAGGGCGTGACGCTCCTCCTGGAGGCAGCCACTGCCATCGCGGACGATGAACCCACACCGATCAGCATTGCGGTCAAAGGCAAGAAGTATGTGACCTCTGAATCTGACAGCATCGAGTTCACCATCACCGACCTCATCGGCAGGCCGGTCCGCAACCTCAAACCTGAAGAAGTAATCGCACAGTCTGGCACCAGGCTCGCCGACGACGTCGTTGTGCTATCCAAACAGCCTTTAACCCAGAAACCTAACGAACCGACTTTCGTCCTTAATCTAAACAAGATTAAATCACAATATGGCGTGTACAAGATCGCTTTAAGTGCCGGGACGAAGACGACCAGCGTGAACGTGGCCGTGCTGGGAGAGATCCAGGTCGCCAATGTCGAGGTCGGCGTCGGCGACGTGGACGGCACCACCAGCCCTAAGATTACAACCATCACTTACCCGAATAAACTGGTGGATAAGTTGCTGGCTGATCATATGCAGAAAGTGAGCCTGAAGTTCACAGTTCGCGACAAATGGAACAAGCCCGTTTTAGTTCAACAAGCTTTTGTAAGGGTTGCCAGCACAGAGACTGACGATGAAACTATCTTCGTTGCAGAACCTGACAACACTAAAGCATATAAAGTTGAATTGAACATCGGCAGCATAGCGAAGCACCTCAACTACGCGTCGGGCTCGTACTCCCTGAGCGTGTACGTAGGAGACAGCGCCGTGTCCAGCCCCGTAGCCTGGCTGCTGGGAGACGTCTCCTTCAACTTCGGCAAGGACGCCAATGCTGTTGGGGTGGCGCGGGCGACGGGTGCGGCGGGGGGGCGGCTGCCGGAGCTGGCGCACACGTTCCGCGCGGCGGAGGCGCGGCCGGCGCGCGCGCTGTCGGACGTGTGCAGCGCGCTGTGCGCGGCGCCGCTGCTGGTGCTCCTGCTGCTGTGGGCGCGGATCGGCATCAACTTGCGGAACTTCCCCCTCGTACCCAGCGCGCTTATATTCCATCTAGCCCTTGGAGCATCTCTCGGGCTGTACGTCGTGCTGTGGCTCCAGCTGACAATGTTCGAAGCCATCCGCTACCTGCTGCCCCTGGGCGCCGTCACCTTCCTCTCCGGACATCGCCTGCTGCAGCGTCTCGTGAAAGACAAAACCTCCAAATAA

Protein

MYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVKNLEQVFYLTNLALLTNCQNSLKPEVLATPTQALDKKDVTIQELYLAVYTLKALGKGTIYDKEDALKNLIQLLKKDDTPANYGYVFALCEHMGCGLWTTSHAEGVILAADETDSRALHFEGGLPVTSQLLTTITRTYKAQKKPTPFTEEQRYKFAEYLLSRRSVNTAKGVTLLLEAATAIADDEPTPISIAVKGKKYVTSESDSIEFTITDLIGRPVRNLKPEEVIAQSGTRLADDVVVLSKQPLTQKPNEPTFVLNLNKIKSQYGVYKIALSAGTKTTSVNVAVLGEIQVANVEVGVGDVDGTTSPKITTITYPNKLVDKLLADHMQKVSLKFTVRDKWNKPVLVQQAFVRVASTETDDETIFVAEPDNTKAYKVELNIGSIAKHLNYASGSYSLSVYVGDSAVSSPVAWLLGDVSFNFGKDANAVGVARATGAAGGRLPELAHTFRAAEARPARALSDVCSALCAAPLLVLLLLWARIGINLRNFPLVPSALIFHLALGASLGLYVVLWLQLTMFEAIRYLLPLGAVTFLSGHRLLQRLVKDKTSK

Similarity

Belongs to the XK family.

Uniprot

H9JVD5   A0A2W1BAP9   A0A2H1W5E4   A0A1E1WVG2   A0A0N1IDA9   S4PMW5   + More
A0A2A4JMM6   A0A194Q431   A0A212FIQ3   A0A0L7LTH0   A0A0M3QVG2   B4LKS1   A0A0M8ZNE6   A0A2A3E236   B4KQV8   K7JAD4   B4J9J3   A0A0C9QA03   B4P536   A0A1W4VDV6   A0A0K8TU52   A0A1L8E194   A0A1L8E1D4   A0A088A702   A0A0B4LFR4   A0A131XNK8   Q7K110   B4QBQ8   B4HN77   A0A232FBP6   A0A0L7RIL1   B3NLK0   B3MIC3   A0A067QE65   A0A2J7QDE8   A0A182NHK5   A0A154NZJ3   B0VZR0   A0A1L8EBK6   A0A1L8EC07   A0A1L8EBM7   A0A3B0J1P4   A0A1B0CEI4   A0A1I8NVP8   A0A1L8EBN3   T1PCA4   A0A1I8NG54   A0A1I8NG52   A0A023FDH8   A0A0J7LBH9   B5E0Y7   A0A1L8EBK7   B4GG23   A0A023GLS6   G3MM45   A0A023GNM8   A0A182MWC5   E2BN86   A0A023FWW6   A0A131XHF6   A0A0L0CEA5   A0A182I3Q6   B4NNG6   A0A182WIS6   A0A084VFB9   A0A182JNY7   A0A034WFW4   A0A182X6F3   A0A131Z110   A0A182P3I7   Q7QJS7   U5EVZ5   A0A182KRU4   A0A182QE28   A0A224Z4M0   A0A182HB54   A0A1W7RAP6   A0A0K8WKN7   A0A0K8UY29   A0A1A9UIX8   A0A1B0FMY9   E0W4C5   A0A1B6CY97   L7MII0   A0A1B6DAG0   D3TPY1   A0A026WLG8   A0A2M4BH05   A0A195CLC7   A0A2M4BHQ8   A0A182FIA1   A0A182J203   A0A1B0A9B8   A0A2M4BH22   A0A182VBE3   A0A1B0AKJ8   A0A0A1WGB5   A0A182TTD8   A0A1L8E9L3   A0A151XHZ1  

Pubmed

19121390    28756777    26354079    23622113    22118469    26227816    + More
17994087    20075255    17550304    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    28648823    24845553    25315136    15632085    22216098    20798317    28049606    26108605    24438588    25348373    26830274    12364791    14747013    17210077    20966253    28797301    26483478    20566863    25576852    20353571    24508170    25830018   

EMBL

BABH01036046    KZ150213    PZC72158.1    ODYU01006430    SOQ48268.1    GDQN01010411    + More
GDQN01000258    JAT80643.1    JAT90796.1    KQ460796    KPJ12175.1    GAIX01003330    JAA89230.1    NWSH01001095    PCG72650.1    KQ459465    KPJ00302.1    AGBW02008342    OWR53618.1    JTDY01000137    KOB78654.1    CP012524    ALC42323.1    CH940648    EDW61794.1    KQ435969    KOX67830.1    KZ288432    PBC25803.1    CH933808    EDW09307.1    AAZX01005687    CH916367    EDW02500.1    GBYB01011233    JAG81000.1    CM000158    EDW91737.1    GDAI01000123    JAI17480.1    GFDF01001584    JAV12500.1    GFDF01001585    JAV12499.1    AE013599    AHN56345.1    GEFM01007013    JAP68783.1    AY069461    AAF57793.1    AAL39606.1    CM000362    CM002911    EDX07568.1    KMY94679.1    CH480816    EDW48359.1    NNAY01000481    OXU28075.1    KQ414583    KOC70802.1    CH954179    EDV54975.1    CH902619    EDV36971.1    KK853953    KDQ71487.1    NEVH01015824    PNF26612.1    KQ434786    KZC05031.1    DS231815    EDS35152.1    GFDG01002659    JAV16140.1    GFDG01002657    JAV16142.1    GFDG01002661    JAV16138.1    OUUW01000001    SPP74907.1    AJWK01008901    GFDG01002658    JAV16141.1    KA645568    AFP60197.1    GBBK01004551    JAC19931.1    LBMM01000031    KMR05267.1    CM000071    EDY69429.1    GFDG01002662    JAV16137.1    CH479183    EDW35443.1    GBBM01000629    JAC34789.1    JO842946    AEO34563.1    GBBM01000630    JAC34788.1    AXCM01000880    GL449385    EFN82848.1    GBBL01000964    JAC26356.1    GEFH01003470    JAP65111.1    JRES01000505    KNC30537.1    APCN01000217    CH964282    EDW85905.1    ATLV01012374    KE524785    KFB36663.1    GAKP01004481    JAC54471.1    GEDV01004411    JAP84146.1    AAAB01008807    EAA04099.4    GANO01000780    JAB59091.1    AXCN02000593    GFPF01010357    MAA21503.1    JXUM01124142    KQ566796    KXJ69818.1    GFAH01000177    JAV48212.1    GDHF01000884    JAI51430.1    GDHF01020866    JAI31448.1    CCAG010011323    DS235886    EEB20481.1    GEDC01018848    JAS18450.1    GACK01001013    JAA64021.1    GEDC01014723    JAS22575.1    EZ423483    ADD19759.1    KK107182    EZA55944.1    GGFJ01003195    MBW52336.1    KQ977642    KYN00889.1    GGFJ01003197    MBW52338.1    GGFJ01003196    MBW52337.1    JXJN01025954    GBXI01016849    JAC97442.1    GFDG01003415    JAV15384.1    KQ982101    KYQ60019.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000053268    UP000007151    UP000037510    + More
UP000092553    UP000008792    UP000053105    UP000242457    UP000009192    UP000002358    UP000001070    UP000002282    UP000192221    UP000005203    UP000000803    UP000000304    UP000001292    UP000215335    UP000053825    UP000008711    UP000007801    UP000027135    UP000235965    UP000075884    UP000076502    UP000002320    UP000268350    UP000092461    UP000095300    UP000095301    UP000036403    UP000001819    UP000008744    UP000075883    UP000008237    UP000037069    UP000075840    UP000007798    UP000075920    UP000030765    UP000075881    UP000076407    UP000075885    UP000007062    UP000075882    UP000075886    UP000069940    UP000249989    UP000078200    UP000092444    UP000009046    UP000053097    UP000078542    UP000069272    UP000075880    UP000092445    UP000075903    UP000092460    UP000075902    UP000075809   

PRIDE

H9JVD5    Q7K110    L7MII0   

Pfam

PF05817   Ribophorin_II        + More
PF02996   Prefoldin
PF10236   DAP3
PF04818   CTD_bind
PF09815   XK-related

Interpro

IPR008814   Swp1        + More
IPR019368   Ribosomal_S23/S29_mit       
IPR009053   Prefoldin       
IPR008092   Ribosomal_S29_mit       
IPR004127   Prefoldin_subunit_alpha       
IPR006903   RNA_pol_II-bd       
IPR008942   ENTH_VHS       
IPR006569   CID_dom       
IPR018629   XK-rel       

SUPFAM

SSF48464   SSF48464       

Gene 3D

1.10.287.370     1.25.40.90    

CDD

cd03562  CID

ProteinModelPortal

H9JVD5   A0A2W1BAP9   A0A2H1W5E4   A0A1E1WVG2   A0A0N1IDA9   S4PMW5   + More
A0A2A4JMM6   A0A194Q431   A0A212FIQ3   A0A0L7LTH0   A0A0M3QVG2   B4LKS1   A0A0M8ZNE6   A0A2A3E236   B4KQV8   K7JAD4   B4J9J3   A0A0C9QA03   B4P536   A0A1W4VDV6   A0A0K8TU52   A0A1L8E194   A0A1L8E1D4   A0A088A702   A0A0B4LFR4   A0A131XNK8   Q7K110   B4QBQ8   B4HN77   A0A232FBP6   A0A0L7RIL1   B3NLK0   B3MIC3   A0A067QE65   A0A2J7QDE8   A0A182NHK5   A0A154NZJ3   B0VZR0   A0A1L8EBK6   A0A1L8EC07   A0A1L8EBM7   A0A3B0J1P4   A0A1B0CEI4   A0A1I8NVP8   A0A1L8EBN3   T1PCA4   A0A1I8NG54   A0A1I8NG52   A0A023FDH8   A0A0J7LBH9   B5E0Y7   A0A1L8EBK7   B4GG23   A0A023GLS6   G3MM45   A0A023GNM8   A0A182MWC5   E2BN86   A0A023FWW6   A0A131XHF6   A0A0L0CEA5   A0A182I3Q6   B4NNG6   A0A182WIS6   A0A084VFB9   A0A182JNY7   A0A034WFW4   A0A182X6F3   A0A131Z110   A0A182P3I7   Q7QJS7   U5EVZ5   A0A182KRU4   A0A182QE28   A0A224Z4M0   A0A182HB54   A0A1W7RAP6   A0A0K8WKN7   A0A0K8UY29   A0A1A9UIX8   A0A1B0FMY9   E0W4C5   A0A1B6CY97   L7MII0   A0A1B6DAG0   D3TPY1   A0A026WLG8   A0A2M4BH05   A0A195CLC7   A0A2M4BHQ8   A0A182FIA1   A0A182J203   A0A1B0A9B8   A0A2M4BH22   A0A182VBE3   A0A1B0AKJ8   A0A0A1WGB5   A0A182TTD8   A0A1L8E9L3   A0A151XHZ1  

KEGG

101740455    K12667 oligosaccharyltransferase complex subunit delta (ribophorin II) | (RefSeq) dolichyl-diphospho

PATHWAY

00510    N-Glycan biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0006487   GO:0016021   GO:0008250   GO:0016740   GO:0015935   GO:0006915   GO:0005761   GO:0035010   GO:0012505   GO:0016757   GO:0004579   GO:0004175   GO:0005089   GO:0035023   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR12640  

Subcellular location

Membrane  

SignalP

Position:   1 - 18,         Likelihood:  0.985737

 

 

Length:

622

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

61.11959

Exp number, first 60 AAs:

2.30295

Total prob of N-in:

0.12538

outside

1  -  530

TMhelix

531  -  553

inside

554  -  565

TMhelix

566  -  588

outside

589  -  592

TMhelix

593  -  612

inside

613  -  622

 

 

Pi

199.000183

Theta

175.860248

Tajima's D

-1.68396

CLR

1241.619157

CSRT

0.0417479126043698

Interpretation

Possibly Positive selection