Gene

KWMTBOMO02430  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013497

Annotation

PREDICTED:_28S_ribosomal_protein_S29?_mitochondrial_[Plutella_xylostella]

Location

Bomo_Chr5(+):1828378-1835376      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.952

CDS

ATGTTTACCCGTAACTGGAAGCATCTTTGTCGCCGCTATTCTCAGGCAGTCACATTCAGAACAAGTGAAATCTATCCTGCTCAACACAATGAAAATCAAATAGGCCTCTTCTATACTATAAAGCCAGACTTGTGCAAGCAGTTGTTCAATCATGGTGGCTTACCAAAGAGTTTCATGAAGCAGACAAAGACATTCACTGAAACAGCCATAATGGTGCGACAGCCTGCTTTGGATATAATGGATTGCATCAGAGCCTCGGATATGAACAAGCCAGTTATAAGATATGTACTCTATGGTGAAAAAGGTTCAGGTAAATCATTGACATTGGCCCACCTCCTACACTATGCACTTGAAGAAGGCTACCTTATTCTTCATGTTCCATGGGTGTCAGAATGGTTACGAAGAACTCCTCGTCATAAAGAAATGACCAATTCTCAGACAAAAGAAGGCTTTGTCGATCTTCCCCTGGACGCCGCCGAGTGGCTGTTGCATTTCAAGACTCAGAATCAGGCATTGCTGAAAAACTGTGAGTTAAAAATCTCTAAAGATTATGAATGGAGCAAGCGAGAGAAGACCGAAGCTGGTTCCCCCATAGCGGCACTCGTAGAGCACGGCATAAACAGAGTCAAATACGCTTGTGACGTCATCGATGCACTCCTCCTAGAGATCAAAATACTTTCTAACAGTAAACAATGCAAAACATTCGTCGCTATTGACGGCTTCAACAGTTTCTACTATCCAATGACGCGACTGAACACGCCCACCAAAAAGAAAATTAAGCCCGAAGAGGTGACACTGACCAATTCGTTTCTGGAGCTCACTAAAAATGATTGGAACAATGGAGTTGTAGTATTAACAATAGATCAACTGGCTGTGCCAGATGAAAACCAGGAGAGTTTCCTACCCAGATACTTGTTATACAAAAAGGGCTTTGAACATCTAGACCCCTTTGTGCCTATCGAAGTAGGAAGATACACAGATAAAGAATTTTTATCTTGTGCGAATTACTACAGAGATCGTTTGTGGCTCAGAGGACCTTCTGATCTGGAAACCGAACTAAAATTCACAAGTGCTAGTAATCCTTATAACTTTATGTTACAATGTGCTCCTTTGTAA

Protein

MFTRNWKHLCRRYSQAVTFRTSEIYPAQHNENQIGLFYTIKPDLCKQLFNHGGLPKSFMKQTKTFTETAIMVRQPALDIMDCIRASDMNKPVIRYVLYGEKGSGKSLTLAHLLHYALEEGYLILHVPWVSEWLRRTPRHKEMTNSQTKEGFVDLPLDAAEWLLHFKTQNQALLKNCELKISKDYEWSKREKTEAGSPIAALVEHGINRVKYACDVIDALLLEIKILSNSKQCKTFVAIDGFNSFYYPMTRLNTPTKKKIKPEEVTLTNSFLELTKNDWNNGVVVLTIDQLAVPDENQESFLPRYLLYKKGFEHLDPFVPIEVGRYTDKEFLSCANYYRDRLWLRGPSDLETELKFTSASNPYNFMLQCAPL

Uniprot

H9JVD4   A0A2A4JMM5   A0A1E1W3T4   A0A2W1BH80   A0A212FIS1   A0A0N1I6H2   + More
A0A194Q431   A0A0L7KRT4   A0A182IS98   A0A067RA02   A0A1W4X4E1   B4J8N5   A0A0M4ESX2   A0A1I8NDN5   T1PBF6   A0A0T6ATQ2   A0A1W4VCZ2   B4KT24   A0A1I8PI07   Q9W253   B4QH57   B4I846   A0A2J7R3E2   A0A0L0C2G1   Q8IA36   A0A182LUH4   B3MEF1   A0A182GVC2   B4P7X8   B4LMZ2   B3NNP4   W8B144   A0A182RM17   A0A3B0J1Z9   W5JUD4   A0A182Y4U6   A0A1B0CB96   A0A1S4FH78   D6WFH0   Q171E7   Q28ZM0   A0A1Y1KZS4   A0A1Q3FJ89   A0A182FII6   B4GHK8   A0A2M4AM56   A0A182VSM9   A0A1A9WAZ9   A0A1A9UHW2   A0A1B0D255   A0A1B0BMM3   A0A0K8VGZ0   A0A1B0G1S9   A0A034VC95   J3JZK8   U4UR61   A0A1L8DRR2   A0A1A9Y4M2   A0A0A1WXT5   B0WWS2   A0A1L8DRP2   B4MJF8   A0A1A9ZB93   A0A182VF22   A0A182WY23   A0A224XE54   A0A182HMU0   A0A182KWA2   Q7Q4S6   A0A182R035   A0A182TMJ2   U5ESZ8   A0A0P4VX74   R4FMD2   A0A182N069   A0A182K2S1   A0A023F7M5   A0A336LXC0   A0A0A9Z2C0   E2A6L6   A0A0V0G5E9   A0A151IXV7   A0A084VK45   A0A158NZQ6   A0A195BEE7   A0A084VQH4   A0A195D217   A0A151WYF6   F4WRJ7   A0A1J1IY53   A0A0P5WJ54   A0A0P5TLU4   A0A0P5IPU2   A0A0P5FZ13   E2BPN5   A0A1L8DRC5   J9JR52   A0A1Y1L3H8   E9H049   A0A0N8D9Q3  

Pubmed

19121390    28756777    22118469    26354079    26227816    24845553    + More
17994087    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    26108605    26483478    17550304    24495485    20920257    23761445    25244985    18362917    19820115    17510324    15632085    28004739    25348373    22516182    23537049    25830018    20966253    12364791    14747013    17210077    27129103    25474469    25401762    26823975    20798317    24438588    21347285    21719571    21292972   

EMBL

BABH01036046    NWSH01001095    PCG72652.1    GDQN01009430    JAT81624.1    KZ150213    + More
PZC72160.1    AGBW02008342    OWR53620.1    KQ460796    KPJ12177.1    KQ459465    KPJ00302.1    JTDY01006695    KOB65766.1    KK852646    KDR19525.1    CH916367    EDW01302.1    CP012524    ALC40512.1    KA646082    AFP60711.1    LJIG01022841    KRT78442.1    CH933808    EDW09544.1    AE013599    AY069644    AAF46846.1    AAL39789.1    CM000362    CM002911    EDX08203.1    KMY95789.1    CH480824    EDW56771.1    NEVH01007821    PNF35335.1    JRES01000987    KNC26417.1    AF348494    AAO15385.1    AXCM01004756    CH902619    EDV36557.2    JXUM01002620    KQ560142    KXJ84204.1    CM000158    EDW92133.1    CH940648    EDW62107.2    CH954179    EDV55601.2    GAMC01015817    JAB90738.1    OUUW01000001    SPP75065.1    ADMH02000421    ETN66570.1    AJWK01004929    KQ971327    EFA00920.1    CH477457    EAT40622.1    CM000071    EAL25593.3    GEZM01068510    JAV66919.1    GFDL01007406    JAV27639.1    CH479183    EDW35978.1    GGFK01008538    MBW41859.1    AJVK01002739    JXJN01017009    GDHF01014181    JAI38133.1    CCAG010002680    GAKP01019547    JAC39405.1    APGK01017667    BT128690    KB740047    AEE63647.1    ENN81847.1    KB632403    ERL94993.1    GFDF01004918    JAV09166.1    GBXI01010615    JAD03677.1    DS232152    EDS36183.1    GFDF01005037    JAV09047.1    CH963846    EDW72247.1    GFTR01005691    JAW10735.1    APCN01004904    AAAB01008963    EAA12146.5    AXCN02001428    GANO01003005    JAB56866.1    GDKW01001321    JAI55274.1    GAHY01001058    JAA76452.1    GBBI01001475    JAC17237.1    UFQS01000264    UFQT01000264    SSX02188.1    SSX22565.1    GBHO01004182    GBRD01013071    GDHC01012589    GDHC01005453    JAG39422.1    JAG52755.1    JAQ06040.1    JAQ13176.1    GL437134    EFN70931.1    GECL01002902    JAP03222.1    KQ980791    KYN13142.1    ATLV01014108    KE524943    KFB38339.1    ADTU01004896    KQ976511    KYM82567.1    ATLV01015216    KE525003    KFB40218.1    KQ976948    KYN06917.1    KQ982656    KYQ52731.1    GL888291    EGI63142.1    CVRI01000061    CRL04070.1    GDIP01098404    JAM05311.1    GDIP01127988    LRGB01001274    JAL75726.1    KZS13096.1    GDIQ01210708    JAK41017.1    GDIQ01255426    JAJ96298.1    GL449633    EFN82439.1    GFDF01005068    JAV09016.1    ABLF02030349    GEZM01068509    JAV66920.1    GL733675    GL732579    EFX62319.1    EFX74944.1    GDIP01055023    JAM48692.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000075880    UP000027135    UP000192223    UP000001070    UP000092553    UP000095301    UP000192221    UP000009192    UP000095300    UP000000803    UP000000304    UP000001292    UP000235965    UP000037069    UP000075883    UP000007801    UP000069940    UP000249989    UP000002282    UP000008792    UP000008711    UP000075900    UP000268350    UP000000673    UP000076408    UP000092461    UP000007266    UP000008820    UP000001819    UP000069272    UP000008744    UP000075920    UP000091820    UP000078200    UP000092462    UP000092460    UP000092444    UP000019118    UP000030742    UP000092443    UP000002320    UP000007798    UP000092445    UP000075903    UP000076407    UP000075840    UP000075882    UP000007062    UP000075886    UP000075902    UP000075884    UP000075881    UP000000311    UP000078492    UP000030765    UP000005205    UP000078540    UP000078542    UP000075809    UP000007755    UP000183832    UP000076858    UP000008237    UP000007819    UP000000305   

PRIDE

H9JVD4    Q9W253    Q8IA36   

Pfam

PF10236   DAP3        + More
PF02996   Prefoldin
PF05817   Ribophorin_II

Interpro

IPR008092   Ribosomal_S29_mit        + More
IPR019368   Ribosomal_S23/S29_mit       
IPR027417   P-loop_NTPase       
IPR009053   Prefoldin       
IPR008814   Swp1       
IPR004127   Prefoldin_subunit_alpha       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.10.287.370    

ProteinModelPortal

H9JVD4   A0A2A4JMM5   A0A1E1W3T4   A0A2W1BH80   A0A212FIS1   A0A0N1I6H2   + More
A0A194Q431   A0A0L7KRT4   A0A182IS98   A0A067RA02   A0A1W4X4E1   B4J8N5   A0A0M4ESX2   A0A1I8NDN5   T1PBF6   A0A0T6ATQ2   A0A1W4VCZ2   B4KT24   A0A1I8PI07   Q9W253   B4QH57   B4I846   A0A2J7R3E2   A0A0L0C2G1   Q8IA36   A0A182LUH4   B3MEF1   A0A182GVC2   B4P7X8   B4LMZ2   B3NNP4   W8B144   A0A182RM17   A0A3B0J1Z9   W5JUD4   A0A182Y4U6   A0A1B0CB96   A0A1S4FH78   D6WFH0   Q171E7   Q28ZM0   A0A1Y1KZS4   A0A1Q3FJ89   A0A182FII6   B4GHK8   A0A2M4AM56   A0A182VSM9   A0A1A9WAZ9   A0A1A9UHW2   A0A1B0D255   A0A1B0BMM3   A0A0K8VGZ0   A0A1B0G1S9   A0A034VC95   J3JZK8   U4UR61   A0A1L8DRR2   A0A1A9Y4M2   A0A0A1WXT5   B0WWS2   A0A1L8DRP2   B4MJF8   A0A1A9ZB93   A0A182VF22   A0A182WY23   A0A224XE54   A0A182HMU0   A0A182KWA2   Q7Q4S6   A0A182R035   A0A182TMJ2   U5ESZ8   A0A0P4VX74   R4FMD2   A0A182N069   A0A182K2S1   A0A023F7M5   A0A336LXC0   A0A0A9Z2C0   E2A6L6   A0A0V0G5E9   A0A151IXV7   A0A084VK45   A0A158NZQ6   A0A195BEE7   A0A084VQH4   A0A195D217   A0A151WYF6   F4WRJ7   A0A1J1IY53   A0A0P5WJ54   A0A0P5TLU4   A0A0P5IPU2   A0A0P5FZ13   E2BPN5   A0A1L8DRC5   J9JR52   A0A1Y1L3H8   E9H049   A0A0N8D9Q3  

PDB

6GAZ     E-value=5.05944e-68,     Score=654

KEGG

101740588    K17408 small subunit ribosomal protein S29 | (RefSeq) 28S ribosomal protein S29, mitochondrial

GO

GO:0006915   GO:0015935   GO:0005761   GO:0006487   GO:0016021   GO:0008250   GO:0003735   GO:0006412   GO:0005763   GO:0032543   GO:0004175   GO:0005089   GO:0035023   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR12810   PTHR12640  

Length:

371

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02906

Exp number, first 60 AAs:

0.00026

Total prob of N-in:

0.02783

outside

1  -  371

 

 

Pi

207.050925

Theta

157.340119

Tajima's D

1.252454

CLR

0.022881

CSRT

0.725413729313534

Interpretation

Uncertain