Gene

KWMTBOMO02426

Pre Gene Modal

BGIBMGA013513

Annotation

PREDICTED:_28S_ribosomal_protein_S11?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr5(-):1779004-1780407      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.96

CDS

ATGATTAGTGCGCTAAGAAACTCTGTACGGGCTTCAGTTACAAGCGTAGTGAGATTGTTCCAAACGAGTACGCCTCAAGCTACTGAAAAGTTTGTTCATAAACGTATTCCTGCTCCAGACGAAGGAGTCCAAGGAGAGAAGATCATTGATCTTGATTCTGCTCTGAAGACGAAACAAAATTTATTTCCAACCTTAGAATCAGATTACCAACTGTATAATGGAATTCCCTACAAGGATCTACCGATATGCAATATCCGTGTTAGCCATAACAATACAATATTCACATTAACCGAACCCGATGGCAAGGTCAGAATCATAAGATCATGCGGCATGGAAGGATTCAAGAACACCAAAAAAGGAACCAACATTGCTGCTCAAACTACTGGAATAACTATTGCAACTAAAGCTGTTGTCCAGGGATATAATACTGTACGAGTAAGAGTCCAAGGCTTGGGACCAGGGCGATTGTCTGCAGTCAAAGGCTTACAAATGGGGGGTTTGAATATAGTTTCAATCACAGATAACACACATGTGTCATGGAATCCACCAAGAGCAAGGAAAGCAAGGAGATTGTAA

Protein

MISALRNSVRASVTSVVRLFQTSTPQATEKFVHKRIPAPDEGVQGEKIIDLDSALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGTNIAAQTTGITIATKAVVQGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL

Uniprot

H9JVF0   A0A0N1IPP0   A0A194Q5M3   A0A2H1VNG9   A0A212FIR4   A0A2A4JMJ5   + More
A0A2W1BDD6   A0A0L7L2A0   A0A0A1XPF8   A0A0K8URT8   A0A0C9Q811   B3M2A2   A0A1W4VDF0   B4NJZ4   A0A1A9ZMA2   Q9VEN6   A0A1B0CL02   B3P3I1   B4JHE6   A0A1B0GEW1   A0A1A9VV18   B4PM81   B4QWC1   B4M5J1   B4IBM5   A0A3B0JLK5   Q297H7   B4GDZ2   A0A1A9YBM9   A0A1B0AVC1   Q3YMW5   B4KC89   A0A1Y1NEB2   A0A1A9X2C6   A0A0L0CQS6   T1DTT3   A0A1L8ED76   A0A1L8ED79   A0A182U332   A0A182WVL7   Q7QAL0   A0A182I996   A0A2M4AN78   A0A0A9XW65   A0A182KXQ5   A0A182P422   A0A1L8DRI5   A0A0K8TSA4   A0A182UTI3   A0A1W4XQY2   A0A2M4C0D9   A0A2M3ZBM1   A0A2M4C049   W5JLB3   A0A1L8DRE7   A0A023EJ52   A0A1I8QBU2   A0A182Q474   A0A182FPQ8   A0A139WEL6   B0WKE8   A0A084VTM3   A0A182JHX7   Q17A32   A0A182RFK6   A0A182MFI4   A0A182VWY8   A0A336M4C0   N6UP60   A0A182NML1   A0A1Q3FEG0   A0A1I8N3V1   T1P8R8   A0A0K8VBY9   A0A067R102   A0A1L8E9Z6   A0A1B6CKB1   A0A0B4J2T4   A0A232EZ09   A0A0P4VHR0   A0A1J1HKU3   A0A2R7WJC7   A0A2S2QRE2   T1IG58   A0A023F660   A0A1B6G247   A0A224XTN7   J9JVU5   A0A0V0GBX8   A0A2S2P7B3   Q8SXD7   A0A226EJH0   A0A1B6JE03   A0A1D2MWX2   C0M4Y4   A0A1S3D6Z2   A0A0C9QE12   F4W814   A0A158NDS4   A0A195BQJ1  

Pubmed

19121390    26354079    22118469    28756777    26227816    25830018    + More
17994087    10731132    12537568    12537572    12537573    12537574    15917496    16110336    17569856    17569867    26109357    26109356    17550304    15632085    28004739    26108605    12364791    14747013    17210077    25401762    26823975    20966253    26369729    20920257    23761445    24945155    18362917    19820115    24438588    17510324    23537049    25315136    24845553    20075255    28648823    27129103    25474469    27289101    21719571    21347285   

EMBL

BABH01036055    KQ460393    KPJ15383.1    KQ459465    KPJ00305.1    ODYU01003352    + More
SOQ42002.1    AGBW02008342    OWR53624.1    NWSH01001095    PCG72653.1    KZ150118    PZC73232.1    JTDY01003397    KOB69623.1    GBXI01001500    JAD12792.1    GDHF01023249    JAI29065.1    GBYB01010303    JAG80070.1    CH902617    EDV42293.1    CH964272    EDW83996.1    AE014297    AY095194    DQ062760    AAF55385.1    AAM12287.1    AAY56633.1    AJWK01016819    CH954181    EDV48761.1    CH916369    EDV93853.1    CCAG010012603    CM000160    EDW96947.1    CM000364    EDX12612.1    CH940652    EDW58917.2    CH480827    EDW44783.1    OUUW01000007    SPP83204.1    CM000070    EAL28228.2    CH479182    EDW33827.1    JXJN01004195    DQ062761    AAY56634.1    CH933806    EDW13698.2    GEZM01010612    JAV93977.1    JRES01000032    KNC34725.1    GAMD01000764    JAB00827.1    GFDG01002270    JAV16529.1    GFDG01002266    JAV16533.1    AAAB01008888    EAA08943.2    APCN01003237    GGFK01008737    MBW42058.1    GBHO01019983    GBRD01013791    GDHC01019703    GDHC01004668    JAG23621.1    JAG52035.1    JAP98925.1    JAQ13961.1    GFDF01005012    JAV09072.1    GDAI01000582    JAI17021.1    GGFJ01009646    MBW58787.1    GGFM01005196    MBW25947.1    GGFJ01009532    MBW58673.1    ADMH02001205    ETN63705.1    GFDF01005026    JAV09058.1    GAPW01004638    JAC08960.1    AXCN02001597    KQ971354    KYB26418.1    DS231971    EDS29767.1    ATLV01016361    KE525079    KFB41317.1    CH477340    EAT43132.1    AXCM01009891    UFQS01000542    UFQT01000542    UFQT01001948    SSX04742.1    SSX25105.1    SSX32212.1    APGK01023660    KB740510    KB630885    KB631808    ENN80517.1    ERL83925.1    ERL86301.1    GFDL01009105    JAV25940.1    KA644520    AFP59149.1    GDHF01016264    JAI36050.1    KK852784    KDR16584.1    GFDG01003360    JAV15439.1    GEDC01023513    JAS13785.1    NNAY01001583    OXU23530.1    GDKW01003358    JAI53237.1    CVRI01000006    CRK88154.1    KK854928    PTY19744.1    GGMS01011030    MBY80233.1    ACPB03025002    GBBI01002014    JAC16698.1    GECZ01013396    JAS56373.1    GFTR01003248    JAW13178.1    ABLF02038289    GECL01000523    JAP05601.1    GGMR01012730    MBY25349.1    AY089696    AAL90434.1    LNIX01000003    OXA57782.1    GECU01010246    JAS97460.1    LJIJ01000456    ODM97304.1    FJ810197    ACN79505.1    GBYB01012648    JAG82415.1    GL887888    EGI69684.1    ADTU01012895    KQ976424    KYM88403.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    + More
UP000007801    UP000192221    UP000007798    UP000092445    UP000000803    UP000092461    UP000008711    UP000001070    UP000092444    UP000078200    UP000002282    UP000000304    UP000008792    UP000001292    UP000268350    UP000001819    UP000008744    UP000092443    UP000092460    UP000009192    UP000091820    UP000037069    UP000075902    UP000076407    UP000007062    UP000075840    UP000075882    UP000075885    UP000075903    UP000192223    UP000000673    UP000095300    UP000075886    UP000069272    UP000007266    UP000002320    UP000030765    UP000075880    UP000008820    UP000075900    UP000075883    UP000075920    UP000019118    UP000030742    UP000075884    UP000095301    UP000027135    UP000002358    UP000215335    UP000183832    UP000015103    UP000007819    UP000198287    UP000094527    UP000079169    UP000007755    UP000005205    UP000078540   

PRIDE

H9JVF0    Q9VEN6    Q8SXD7   

Pfam

PF00411   Ribosomal_S11        + More
PF08314   Sec39
PF15492   Nbas_N

Interpro

IPR036967   Ribosomal_S11_sf        + More
IPR001971   Ribosomal_S11       
IPR036322   WD40_repeat_dom_sf       
IPR013244   Sec39_domain       
IPR029145   NBAS_N       

SUPFAM

SSF50978   SSF50978       

Gene 3D

3.30.420.80    

ProteinModelPortal

H9JVF0   A0A0N1IPP0   A0A194Q5M3   A0A2H1VNG9   A0A212FIR4   A0A2A4JMJ5   + More
A0A2W1BDD6   A0A0L7L2A0   A0A0A1XPF8   A0A0K8URT8   A0A0C9Q811   B3M2A2   A0A1W4VDF0   B4NJZ4   A0A1A9ZMA2   Q9VEN6   A0A1B0CL02   B3P3I1   B4JHE6   A0A1B0GEW1   A0A1A9VV18   B4PM81   B4QWC1   B4M5J1   B4IBM5   A0A3B0JLK5   Q297H7   B4GDZ2   A0A1A9YBM9   A0A1B0AVC1   Q3YMW5   B4KC89   A0A1Y1NEB2   A0A1A9X2C6   A0A0L0CQS6   T1DTT3   A0A1L8ED76   A0A1L8ED79   A0A182U332   A0A182WVL7   Q7QAL0   A0A182I996   A0A2M4AN78   A0A0A9XW65   A0A182KXQ5   A0A182P422   A0A1L8DRI5   A0A0K8TSA4   A0A182UTI3   A0A1W4XQY2   A0A2M4C0D9   A0A2M3ZBM1   A0A2M4C049   W5JLB3   A0A1L8DRE7   A0A023EJ52   A0A1I8QBU2   A0A182Q474   A0A182FPQ8   A0A139WEL6   B0WKE8   A0A084VTM3   A0A182JHX7   Q17A32   A0A182RFK6   A0A182MFI4   A0A182VWY8   A0A336M4C0   N6UP60   A0A182NML1   A0A1Q3FEG0   A0A1I8N3V1   T1P8R8   A0A0K8VBY9   A0A067R102   A0A1L8E9Z6   A0A1B6CKB1   A0A0B4J2T4   A0A232EZ09   A0A0P4VHR0   A0A1J1HKU3   A0A2R7WJC7   A0A2S2QRE2   T1IG58   A0A023F660   A0A1B6G247   A0A224XTN7   J9JVU5   A0A0V0GBX8   A0A2S2P7B3   Q8SXD7   A0A226EJH0   A0A1B6JE03   A0A1D2MWX2   C0M4Y4   A0A1S3D6Z2   A0A0C9QE12   F4W814   A0A158NDS4   A0A195BQJ1  

PDB

6NU3     E-value=2.60179e-21,     Score=248

KEGG

101741005    K02948 small subunit ribosomal protein S11 | (RefSeq) 28S ribosomal protein S11, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0006890   GO:0032543   GO:0005763   GO:0070181   GO:0000462   GO:0048027   GO:0000028   GO:0004175   GO:0005089   GO:0035023   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR11759  

Length:

191

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0563

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.32088

outside

1  -  191

 

 

Pi

109.905869

Theta

159.802857

Tajima's D

-1.036511

CLR

2.286048

CSRT

0.132143392830358

Interpretation

Uncertain