Silkworm Genome Informatics Database

Gene

KWMTBOMO02421 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013515

Annotation

PREDICTED:_uncharacterized_protein_C19orf47_homolog_[Papilio_xuthus]

Location

Bomo_Chr5(-):1760584-1763747 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.474

CDS

ATGAATGTAAAAAACAACAAAATGGATTCAAACCTAACCGGTATGTGGGTAAGTTTCTTCACAACAGCTGGTATACCATCAGATGTGGCTGCTACATATGCACTTACATTTACCGAGAACAGGATCCAGAGTGATATGCTGTTGGATCTGAATAAGGAGTACCTCAGAGACATGGGGATAACACGAATGGGAGATGTTATTGCTATATTACGTCATTCAAAACAAGTACACGAAAATGCAGCTCGTGATAAGGTGCTTAGTAATACTAGTGTGAACAAGGTGCCTGTGGCGGCCATCACAGGTCGCTCTACACTCCCACAACCTTCATCACCGGCTAGTCGAATCTTGGAACATTACACTCGCAATTCTCAGTCCGAATCACCCAGCCCCTCACCACAATTGAAACGGAAAGCAGTTCAACCTAATGACAATATTGATGAAAGTGAAAAGAACTTGAAGAAAGCACGTCTCATTCGCTTTGGATCAACAGGGCTGACCCAACTAGTTACCAGTGAAGCACCATCTAACAAGCAAACGGTGTTCTCTCGTCTTGGTAGCAACGAATCAGTTACCAATGCAACAAAACCGTCCGCTAAGCCCATATACGCGAGATTGGGTGCAAAATCTGCACAAGTGGACCACGTCATACCGATGCAGAAAGATGCCCTTAAATATGAAGGCATATTGAAAGCTTCCCCACCCACAAAGAAAACAGTGATGGTAACTACTTCAAAGACGAACATCAGAAAGATCAACTGTACCATGAGAGCTGATGAGATACCGGTCAGCGTTAAAGAAAAATTAGCCAAACCTAAATCTGTGAAATTTTCAAATCAAATACAGTACAAAGAAATTGAAATAAATAAAAAGATTCAACCCAAGAAAGCCACACAAATTTTTAATAAACCAGAGAGGAGATTGTCTATGACTGAAACCAGTGTAAAATCCAGATTGGGCAACCAAAGTGCGAATAACTTAACCATTACGAGAAACGTTTTCAATAGACTTGGTGTTTGA

Protein

MNVKNNKMDSNLTGMWVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEHYTRNSQSESPSPSPQLKRKAVQPNDNIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQTVFSRLGSNESVTNATKPSAKPIYARLGAKSAQVDHVIPMQKDALKYEGILKASPPTKKTVMVTTSKTNIRKINCTMRADEIPVSVKEKLAKPKSVKFSNQIQYKEIEINKKIQPKKATQIFNKPERRLSMTETSVKSRLGNQSANNLTITRNVFNRLGV

Uniprot

H9JVF2 A0A1E1WA04 A0A194Q5M8 A0A2W1BJ19 A0A212F5K7 A0A0N1IF73 + More
A0A0L7L2W4 A0A2A4JML6 A0A2H1W6A0 A0A1E1WU64 A0A1L8DD01 A0A087UAF0 E0VIQ2 A0A1B0DND9 K1QA17 A0A182W7S9 A0A182RVM5 C3XZJ6

Pubmed

19121390 26354079 28756777 22118469 26227816 20566863 + More
22992520 18563158

EMBL

BABH01036055 GDQN01007216 JAT83838.1 KQ459465 KPJ00310.1 KZ150118 + More
PZC73237.1 AGBW02010179 OWR49017.1 KQ460393 KPJ15378.1 JTDY01003397 KOB69624.1 NWSH01001095 PCG72640.1 ODYU01006613 SOQ48610.1 GDQN01000465 JAT90589.1 GFDF01009745 JAV04339.1 KK118982 KFM74339.1 DS235201 EEB13258.1 AJVK01007505 AJVK01007506 JH815978 EKC25680.1 GG666475 EEN66517.1

Proteomes

UP000005204 UP000053268 UP000007151 UP000053240 UP000037510 UP000218220 + More
UP000054359 UP000009046 UP000092462 UP000005408 UP000075920 UP000075900 UP000001554

PRIDE

H9JVF2

Pfam

PF17740   DUF5577        + More
PF12796   Ank_2
PF05648   PEX11

Interpro

IPR013761   SAM/pointed_sf        + More
IPR039161   C19orf47-like
IPR040772   C19orf47_SAM
IPR041477   DUF5577
IPR001660   SAM
IPR036770   Ankyrin_rpt-contain_sf
IPR008733   PEX11
IPR002110   Ankyrin_rpt
IPR020683   Ankyrin_rpt-contain_dom

SUPFAM

SSF47769 SSF47769 + More
SSF48403 SSF48403

Gene 3D

1.10.150.50 1.25.40.20

CDD

cd09531 SAM_CS047
cd00204 ANK

ProteinModelPortal

H9JVF2 A0A1E1WA04 A0A194Q5M8 A0A2W1BJ19 A0A212F5K7 A0A0N1IF73 + More
A0A0L7L2W4 A0A2A4JML6 A0A2H1W6A0 A0A1E1WU64 A0A1L8DD01 A0A087UAF0 E0VIQ2 A0A1B0DND9 K1QA17 A0A182W7S9 A0A182RVM5 C3XZJ6

PDB

3IDW E-value=0.000745101, Score=100

KEGG

101741486 no KO assigned | (RefSeq) uncharacterized protein C19orf47 homolog

GO

GO:0005779 GO:0016559 GO:0005515 GO:0005839 GO:0051603 GO:0004175 GO:0005089 GO:0035023 GO:0006289 GO:0004518 GO:0006281 GO:0048384

PANTHER

PTHR21359

Length:

338

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

18.03196

Exp number, first 60 AAs:

18.02693

Total prob of N-in:

0.56430

POSSIBLE N-term signal

sequence

outside

1 - 14

TMhelix

15 - 37

inside

38 - 338

Pi

177.715873

Theta

165.405478

Tajima's D

0.1695

CLR

1.491176

CSRT

0.418879056047198

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics