Gene

KWMTBOMO02415  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013491

Annotation

PREDICTED:_nucleoporin_Nup43_[Amyelois_transitella]

Location

Bomo_Chr5(+):1592348-1595255      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.637 Nuclear   Reliability : 1.068

CDS

ATGACCCATTTGTATACAAAAATGTCAATAGATATTCAAGGAACGTTTGTTTCTCAAAAAATAAATAAAGTCAGATGGATTCCTGAAGATTATGCTGAAACAAAATGTTTTCTCACCGGTAGTTGGGATGATGAGGTCAACTTAATAACAGTTTGGACTTTTGAAAGTGTTAACGAAGACGAAGAGGTAGAATATCCTCGTGCCCTTACCAAGTATCCAGTAGATGATGATGTTACACAAATAAAATTCACGGAAAAAAACAAAATAGCCGTTTCAATATCTAATGGTGATGTAAAAATACTTGAAATTAGTGCTTATGATAAACAAACACCACTTAAAGAAATATTTTCTTGGAAGTCTTTACATAACTACGGTAATACAAAATGCTCTGCAACATCTTTGGATACATATGAAGGAGACATAGCTAGTATTGGTGAGGATGGCAATGTGAACATATTGAGTGGCCGAAGGGGTGAAGTCAACCGTACAATCAAAGGGGCTGATAGCTGTTCATTGCATTCCATTTGTTATTTAAAACACACAGAGGTTATAACAGGTAACATTCGAGGCCACATCAAAATTTGGGACCTTCGATCTGAAGTAGACAAACCCGCTGCATCATTCTTACTAGCTGGAGATGAGTTAGCTGCGACATGCATCATTAATCATCCAACACAACCTCATATAGTACTAGCGGGCAGCGAATCAGGATCTGTTGCTATTTGGGACTTACGCATGAACACATTTCCTACATCCCTTCTTAGTGCACACACAGGTGGAGTTACCGAAATGCAATTCCACCCAGAAAATCCCCAGAAATTACTAACTTGTGCGGTTTCGGGTGAACTGTGGGATTGGAACATGGAAACAATTACAAAAAGCACTAAAGGACCAGACAACCAGCTGGTATGGATGCCTTTACAAGATAAAAATACAATGATGATTAACTCTTTAATGCCATCATTTCATCAAGCTTTGAACTCTTTAGATTGTGAAAAGGGAAGGATTTTATGTGGAGCAGATAATGAAGCCGTATATTTGATAAAGAATTTGAAGTATTGA

Protein

MTHLYTKMSIDIQGTFVSQKINKVRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESGSVAIWDLRMNTFPTSLLSAHTGGVTEMQFHPENPQKLLTCAVSGELWDWNMETITKSTKGPDNQLVWMPLQDKNTMMINSLMPSFHQALNSLDCEKGRILCGADNEAVYLIKNLKY

Uniprot

H9JVC8   A0A2A4JLX6   A0A2W1BDE8   A0A2H1VME9   A0A212F5N4   S4PLI8   + More
A0A194Q5N3   A0A0N1IGU6   A0A2J7PFU5   A0A067QQ12   A0A2P8YGQ2   A0A1B6ML29   A0A1B6EUZ0   D6WMU7   A0A310S4I6   A0A088AGJ4   A0A0M9AB59   A0A154PH77   A0A1B6C3E0   K7IN37   E2B4A6   A0A158ND21   F4X0K0   A0A2J7PFV9   A0A0T6B1V7   A0A2J7PFT5   A0A0L7KNX6   A0A195B8T8   A0A1Y1NBI4   A0A2A3EHY7   E9IJS9   A0A151IDW4   A0A151XGJ3   A0A0L7QVG8   A0A0C9R3T1   E2AV08   A0A0J7KDJ7   A0A195F8M1   A0A026WH48   A0A3L8DJ98   A0A195DUP8   A0A1W4WN21   A0A232FAK2   E0VG62   B0WQK2   A0A1Q3F321   A0A1I8PRP5   A0A1I8MF61   A0A1S4FU15   Q16GG9   Q16P91   A0A182GD06   A0A0L0C6R3   W8C7C0   B4I297   B4K933   A0A2B4SQS5   A0A1W4UK63   B4G5D0   B5RJQ1   A0A3M6U5Q8   A0A0U2LFD5   A0A2H8TN01   B3NZ67   Q299L4   T1JAS8   Q9VE85   B4PLB4   A0A0A1WQW1   B4M400   A0A3B0KQA2   U5EXV2   A0A034W4U9   B4QUF5   J9K0W3   A0A0M3QXL9   A0A0K8WIQ7   B4JF24   B4N9D4   A0A1S3IPH1   B3LWP5   V3Z4X9   A0A023EQQ5   A0A1L8G2B9   A0A3B4DTQ3   Q05AW3   C1BKP4   C3YXC1   A0A0P4VW07   A0A2C9JCE2   J9M0U5   E9GIC8   A0A0Q3TGW7   A0A1J1J3I1   A0A1A9VPJ7   E1C370   A0A0N8CJY8   K1RF41   Q28FE7   B7ZU31  

Pubmed

19121390    28756777    22118469    23622113    26354079    24845553    + More
29403074    18362917    19820115    20075255    20798317    21347285    21719571    26227816    28004739    21282665    24508170    30249741    28648823    20566863    25315136    17510324    26483478    26108605    24495485    17994087    30382153    26621068    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    25830018    25348373    23254933    24945155    27762356    18563158    15562597    21292972    15592404    22992520    20431018   

EMBL

BABH01036073    NWSH01001108    PCG72574.1    KZ150118    PZC73242.1    ODYU01003354    + More
SOQ42009.1    AGBW02010179    OWR49019.1    GAIX01004005    JAA88555.1    KQ459465    KPJ00315.1    KQ460393    KPJ15372.1    NEVH01025648    PNF15205.1    KK853149    KDR10640.1    PYGN01000608    PSN43436.1    GEBQ01003290    JAT36687.1    GECZ01027963    JAS41806.1    KQ971342    EFA03069.1    KQ777390    OAD52095.1    KQ435706    KOX80226.1    KQ434892    KZC10530.1    GEDC01029291    JAS08007.1    GL445549    EFN89454.1    ADTU01012186    GL888498    EGI59992.1    PNF15207.1    LJIG01016359    KRT80839.1    PNF15204.1    JTDY01007686    KOB65018.1    KQ976558    KYM80655.1    GEZM01007196    JAV95304.1    KZ288235    PBC31413.1    GL763883    EFZ19125.1    KQ977906    KYM98871.1    KQ982173    KYQ59418.1    KQ414726    KOC62632.1    GBYB01007452    JAG77219.1    GL442974    EFN62726.1    LBMM01009277    KMQ88254.1    KQ981744    KYN36399.1    KK107213    EZA55278.1    QOIP01000007    RLU20504.1    KQ980341    KYN16477.1    NNAY01000599    OXU27468.1    DS235131    EEB12368.1    DS232041    EDS32877.1    GFDL01013091    JAV21954.1    CH478278    EAT33330.1    CH477791    EAT36177.1    JXUM01055001    KQ561847    KXJ77347.1    JRES01000835    KNC27922.1    GAMC01003689    JAC02867.1    CH480820    EDW54654.1    CH933806    EDW14446.1    LSMT01000039    PFX31230.1    CH479179    EDW24796.1    BT044525    ACH95299.1    RCHS01002239    RMX48798.1    KT754638    ALS04472.1    GFXV01003741    MBW15546.1    CH954181    EDV48609.1    CM000070    EAL27689.3    JH432004    AE014297    AAF55542.1    CM000160    EDW95896.1    GBXI01013246    JAD01046.1    CH940652    EDW59361.1    OUUW01000013    SPP88016.1    GANO01000760    JAB59111.1    GAKP01010169    JAC48783.1    CM000364    EDX12455.1    ABLF02005061    CP012526    ALC46099.1    GDHF01001268    JAI51046.1    CH916369    EDV93305.1    CH964232    EDW80567.2    CH902617    EDV42683.1    KB203251    ESO85758.1    GAPW01002659    JAC10939.1    CM004475    OCT78025.1    BC123276    AAI23277.1    BT075173    ACO09597.1    GG666562    EEN55139.1    GDRN01109775    JAI57030.1    ABLF02016783    ABLF02016784    ABLF02042437    GL732546    EFX80654.1    LMAW01002567    KQK79806.1    CVRI01000064    CRL05441.1    AADN05000003    GDIP01124343    JAL79371.1    JH819114    EKC32721.1    CR762004    CAJ81956.1    AAMC01134560    AAMC01134561    AAMC01134562    AAMC01134563    AAMC01134564    AAMC01134565    BC171085    AAI71085.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000235965    + More
UP000027135    UP000245037    UP000007266    UP000005203    UP000053105    UP000076502    UP000002358    UP000008237    UP000005205    UP000007755    UP000037510    UP000078540    UP000242457    UP000078542    UP000075809    UP000053825    UP000000311    UP000036403    UP000078541    UP000053097    UP000279307    UP000078492    UP000192223    UP000215335    UP000009046    UP000002320    UP000095300    UP000095301    UP000008820    UP000069940    UP000249989    UP000037069    UP000001292    UP000009192    UP000225706    UP000192221    UP000008744    UP000275408    UP000008711    UP000001819    UP000000803    UP000002282    UP000008792    UP000268350    UP000000304    UP000007819    UP000092553    UP000001070    UP000007798    UP000085678    UP000007801    UP000030746    UP000186698    UP000261440    UP000001554    UP000076420    UP000000305    UP000051836    UP000183832    UP000078200    UP000000539    UP000005408    UP000008143   

PRIDE

H9JVC8    Q9VE85   

Pfam

PF00400   WD40        + More
PF07717   OB_NTP_bind
PF00271   Helicase_C
PF04408   HA2
PF00270   DEAD
PF04831   Popeye

Interpro

IPR017986   WD40_repeat_dom        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037628   Nup43       
IPR036322   WD40_repeat_dom_sf       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR011709   DUF1605       
IPR007502   Helicase-assoc_dom       
IPR027417   P-loop_NTPase       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014710   RmlC-like_jellyroll       
IPR018490   cNMP-bd-like       
IPR006916   Popeye_prot       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF52540   SSF52540       
SSF51206   SSF51206       

Gene 3D

2.130.10.10     2.60.120.10    

CDD

cd00079  HELICc

ProteinModelPortal

H9JVC8   A0A2A4JLX6   A0A2W1BDE8   A0A2H1VME9   A0A212F5N4   S4PLI8   + More
A0A194Q5N3   A0A0N1IGU6   A0A2J7PFU5   A0A067QQ12   A0A2P8YGQ2   A0A1B6ML29   A0A1B6EUZ0   D6WMU7   A0A310S4I6   A0A088AGJ4   A0A0M9AB59   A0A154PH77   A0A1B6C3E0   K7IN37   E2B4A6   A0A158ND21   F4X0K0   A0A2J7PFV9   A0A0T6B1V7   A0A2J7PFT5   A0A0L7KNX6   A0A195B8T8   A0A1Y1NBI4   A0A2A3EHY7   E9IJS9   A0A151IDW4   A0A151XGJ3   A0A0L7QVG8   A0A0C9R3T1   E2AV08   A0A0J7KDJ7   A0A195F8M1   A0A026WH48   A0A3L8DJ98   A0A195DUP8   A0A1W4WN21   A0A232FAK2   E0VG62   B0WQK2   A0A1Q3F321   A0A1I8PRP5   A0A1I8MF61   A0A1S4FU15   Q16GG9   Q16P91   A0A182GD06   A0A0L0C6R3   W8C7C0   B4I297   B4K933   A0A2B4SQS5   A0A1W4UK63   B4G5D0   B5RJQ1   A0A3M6U5Q8   A0A0U2LFD5   A0A2H8TN01   B3NZ67   Q299L4   T1JAS8   Q9VE85   B4PLB4   A0A0A1WQW1   B4M400   A0A3B0KQA2   U5EXV2   A0A034W4U9   B4QUF5   J9K0W3   A0A0M3QXL9   A0A0K8WIQ7   B4JF24   B4N9D4   A0A1S3IPH1   B3LWP5   V3Z4X9   A0A023EQQ5   A0A1L8G2B9   A0A3B4DTQ3   Q05AW3   C1BKP4   C3YXC1   A0A0P4VW07   A0A2C9JCE2   J9M0U5   E9GIC8   A0A0Q3TGW7   A0A1J1J3I1   A0A1A9VPJ7   E1C370   A0A0N8CJY8   K1RF41   Q28FE7   B7ZU31  

PDB

4I79     E-value=1.27101e-49,     Score=495

KEGG

101742253    K14305 nuclear pore complex protein Nup43 | (RefSeq) nucleoporin Nup43

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0031080   GO:0016021   GO:0004386   GO:0005524   GO:0003676   GO:0000278   GO:0007507   GO:0000776   GO:0005515   GO:0005839   GO:0051603   GO:0004175   GO:0005089   GO:0035023   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR22652   PTHR12101  

Length:

353

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000820000000000002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03420

outside

1  -  353

 

 

Pi

234.831581

Theta

194.349206

Tajima's D

0.659252

CLR

0.325397

CSRT

0.556722163891805

Interpretation

Uncertain