Gene

KWMTBOMO02411

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr5(-):1544929-1546617      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.77

CDS

ATGTACATCCGTTGGCAAAATCACGTCTTAAACCATCTTGCCTCAACCATAGGTGCAAAGAACGAGCCGTCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCTGGCGCTACCAAGGGAGCTACTAGAACCCCCGGCTATGGTAAGATAG

Protein

MYIRWQNHVLNHLASTIGAKNEPSYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGLALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

J9LF86   X1XFE3   X1X928   J9LFC9   A0A087T1W0   J9KCZ4   + More
X1WNI2   J9L876   A0A2S2RAN7   A0A087U2S8   X1WSV5   J9KPF1   A0A2S2Q823   X1XGU0   X1WZH0   X1X0N4   V5GNF3   A0A2S2NJB5   J9KLQ2   X1WN18   A0A1Y1KUU7   X1X2B8   X1WWQ0   X1WLB2   J9LR29   J9LC21   A0A2S2QZC0   X1WVE4   A0A194Q1H8   J9KVX5   A0A0A9Z4E6   A0A0N0PA09   A0A0A9YN51   A0A0N1PFV1   V5I850   J9KKL3   A0A2S2PR14   X1WVA7   A0A2J7QEZ4   A0A2J7Q5G9   X1WQR0   A0A0A9YJ00   X1WMU5   U4UTK6   A0A2J7RS77   A0A2J7RB54   A0A0A9YU04   A0A2J7PMP9   A0A2L2YNL2   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7Q059   A0A2J7RIW7   A0A2J7PMP6   A0A2J7RM10   A0A1Y1NA23   X1WQK3   J9LF85   V5GNJ2   A0A2J7QUJ9   X1WXU3   Q8T456   P21328   A0A2J7QFL0   A0A2S2N7M6   A0A2J7RPU2   A0A224XF24   X1WWC4   A0A2J7Q6J2   A0A2J7Q0Q6   A0A224X6Q4   Q9XXW0   A0A2J7R6U1   A0A2J7Q1Y9   A0A2J7R2E1   A0A2J7RRU8   A0A2S2PX53   A0A2J7RKP3   A0A2J7PU96   A0A087TV70   A0A2J7PBY3   A0A2J7QY69   A0A2J7QR37   Q9BPQ0   A0A2J7PDS9   A0A2H8TV33   X1WKB2   P21329   O96544   A0A1B6LG18   A0A2S2QJM7   J9KPF2   A0A2S2QTZ8  

EC Number

2.7.7.49

Pubmed

28004739    26354079    25401762    23537049    26561354    2463954    + More
3040362    1714378    10333566    1701254    10380107   

EMBL

ABLF02017815    ABLF02029291    ABLF02066620    ABLF02023911    KK113014    KFM59099.1    + More
ABLF02008463    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02033522    GGMS01017914    MBY87117.1    KK117880    KFM71667.1    ABLF02016494    ABLF02066976    ABLF02041767    GGMS01004685    MBY73888.1    ABLF02055645    ABLF02034467    ABLF02060395    GALX01005359    JAB63107.1    GGMR01004661    MBY17280.1    ABLF02030319    ABLF02030320    ABLF02021177    ABLF02027367    ABLF02066338    GEZM01074951    JAV64378.1    ABLF02041765    ABLF02021994    ABLF02042518    ABLF02057746    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMS01013269    MBY82472.1    ABLF02004189    ABLF02005775    ABLF02015592    ABLF02057149    ABLF02058897    KQ459580    KPI99178.1    ABLF02010251    ABLF02035981    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    KQ459259    KPJ02068.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    KQ459265    KPJ02064.1    GALX01005300    JAB63166.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMR01019198    MBY31817.1    ABLF02034494    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    ABLF02050434    ABLF02064867    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    ABLF02014862    ABLF02014866    ABLF02061908    KB632361    ERL93526.1    NEVH01000280    PNF43672.1    NEVH01005938    PNF38077.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01023961    PNF17613.1    IAAA01035747    LAA09607.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01020071    PNF21969.1    NEVH01003017    PNF40781.1    NEVH01023962    PNF17612.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GEZM01008457    JAV94772.1    ABLF02041766    ABLF02017813    GALX01005299    JAB63167.1    NEVH01010546    PNF32261.1    ABLF02008933    AY089343    AAL90081.2    M22874    M38643    NEVH01014858    PNF27387.1    GGMR01000167    MBY12786.1    NEVH01001355    PNF42855.1    GFTR01008038    JAW08388.1    ABLF02003961    ABLF02059872    NEVH01017470    PNF24199.1    NEVH01019964    PNF22161.1    GFTR01008279    JAW08147.1    AB018558    BAA76304.1    NEVH01006754    PNF36554.1    NEVH01019376    PNF22596.1    NEVH01007838    PNF34986.1    NEVH01000598    PNF43535.1    GGMS01000737    MBY69940.1    NEVH01002716    PNF41415.1    NEVH01021205    PNF19912.1    KK116883    KFM69009.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    AB055391    BAB21761.1    NEVH01026154    PNF14491.1    GFXV01005866    MBW17671.1    ABLF02049496    M38437    AF081101    AAC72919.1    GEBQ01017345    JAT22632.1    GGMS01008766    MBY77969.1    ABLF02003739    ABLF02003740    GGMS01012005    MBY81208.1   

Proteomes

UP000007819    UP000054359    UP000053268    UP000235965    UP000030742   

PRIDE

Q8T456    P21328    Q9XXW0    Q9BPQ0    P21329   

Pfam

PF00078   RVT_1        + More
PF07530   PRE_C2HC
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF03184   DDE_1
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR004875   DDE_SF_endonuclease_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

J9LF86   X1XFE3   X1X928   J9LFC9   A0A087T1W0   J9KCZ4   + More
X1WNI2   J9L876   A0A2S2RAN7   A0A087U2S8   X1WSV5   J9KPF1   A0A2S2Q823   X1XGU0   X1WZH0   X1X0N4   V5GNF3   A0A2S2NJB5   J9KLQ2   X1WN18   A0A1Y1KUU7   X1X2B8   X1WWQ0   X1WLB2   J9LR29   J9LC21   A0A2S2QZC0   X1WVE4   A0A194Q1H8   J9KVX5   A0A0A9Z4E6   A0A0N0PA09   A0A0A9YN51   A0A0N1PFV1   V5I850   J9KKL3   A0A2S2PR14   X1WVA7   A0A2J7QEZ4   A0A2J7Q5G9   X1WQR0   A0A0A9YJ00   X1WMU5   U4UTK6   A0A2J7RS77   A0A2J7RB54   A0A0A9YU04   A0A2J7PMP9   A0A2L2YNL2   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7Q059   A0A2J7RIW7   A0A2J7PMP6   A0A2J7RM10   A0A1Y1NA23   X1WQK3   J9LF85   V5GNJ2   A0A2J7QUJ9   X1WXU3   Q8T456   P21328   A0A2J7QFL0   A0A2S2N7M6   A0A2J7RPU2   A0A224XF24   X1WWC4   A0A2J7Q6J2   A0A2J7Q0Q6   A0A224X6Q4   Q9XXW0   A0A2J7R6U1   A0A2J7Q1Y9   A0A2J7R2E1   A0A2J7RRU8   A0A2S2PX53   A0A2J7RKP3   A0A2J7PU96   A0A087TV70   A0A2J7PBY3   A0A2J7QY69   A0A2J7QR37   Q9BPQ0   A0A2J7PDS9   A0A2H8TV33   X1WKB2   P21329   O96544   A0A1B6LG18   A0A2S2QJM7   J9KPF2   A0A2S2QTZ8  

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0003676   GO:0004519   GO:0008270  

Length:

324

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.35837

Exp number, first 60 AAs:

0.01742

Total prob of N-in:

0.06246

outside

1  -  324

 

 

Pi

129.020038

Theta

133.245402

Tajima's D

-0.306795

CLR

487.986707

CSRT

0.285585720713964

Interpretation

Uncertain