SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02411
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Full name
RNA-directed DNA polymerase from mobile element jockey      
Alternative Name
Reverse transcriptase
Location in the cell
Mitochondrial   Reliability : 2.77
 

Sequence

CDS
ATGTACATCCGTTGGCAAAATCACGTCTTAAACCATCTTGCCTCAACCATAGGTGCAAAGAACGAGCCGTCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCTGGCGCTACCAAGGGAGCTACTAGAACCCCCGGCTATGGTAAGATAG
Protein
MYIRWQNHVLNHLASTIGAKNEPSYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGLALPRELLEPPAMVR

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Miscellaneous
Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  RNA-directed DNA polymerase from mobile element jockey
EC Number
2.7.7.49
EMBL
ABLF02017815    ABLF02029291    ABLF02066620    ABLF02023911    KK113014    KFM59099.1    + More
ABLF02008463    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02033522    GGMS01017914    MBY87117.1    KK117880    KFM71667.1    ABLF02016494    ABLF02066976    ABLF02041767    GGMS01004685    MBY73888.1    ABLF02055645    ABLF02034467    ABLF02060395    GALX01005359    JAB63107.1    GGMR01004661    MBY17280.1    ABLF02030319    ABLF02030320    ABLF02021177    ABLF02027367    ABLF02066338    GEZM01074951    JAV64378.1    ABLF02041765    ABLF02021994    ABLF02042518    ABLF02057746    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMS01013269    MBY82472.1    ABLF02004189    ABLF02005775    ABLF02015592    ABLF02057149    ABLF02058897    KQ459580    KPI99178.1    ABLF02010251    ABLF02035981    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    KQ459259    KPJ02068.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    KQ459265    KPJ02064.1    GALX01005300    JAB63166.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMR01019198    MBY31817.1    ABLF02034494    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    ABLF02050434    ABLF02064867    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    ABLF02014862    ABLF02014866    ABLF02061908    KB632361    ERL93526.1    NEVH01000280    PNF43672.1    NEVH01005938    PNF38077.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01023961    PNF17613.1    IAAA01035747    LAA09607.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01020071    PNF21969.1    NEVH01003017    PNF40781.1    NEVH01023962    PNF17612.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GEZM01008457    JAV94772.1    ABLF02041766    ABLF02017813    GALX01005299    JAB63167.1    NEVH01010546    PNF32261.1    ABLF02008933    AY089343    AAL90081.2    M22874    M38643    NEVH01014858    PNF27387.1    GGMR01000167    MBY12786.1    NEVH01001355    PNF42855.1    GFTR01008038    JAW08388.1    ABLF02003961    ABLF02059872    NEVH01017470    PNF24199.1    NEVH01019964    PNF22161.1    GFTR01008279    JAW08147.1    AB018558    BAA76304.1    NEVH01006754    PNF36554.1    NEVH01019376    PNF22596.1    NEVH01007838    PNF34986.1    NEVH01000598    PNF43535.1    GGMS01000737    MBY69940.1    NEVH01002716    PNF41415.1    NEVH01021205    PNF19912.1    KK116883    KFM69009.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    AB055391    BAB21761.1    NEVH01026154    PNF14491.1    GFXV01005866    MBW17671.1    ABLF02049496    M38437    AF081101    AAC72919.1    GEBQ01017345    JAT22632.1    GGMS01008766    MBY77969.1    ABLF02003739    ABLF02003740    GGMS01012005    MBY81208.1   
Pfam
PF00078   RVT_1        + More
PF07530   PRE_C2HC
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF03184   DDE_1
PF10551   MULE
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR004875   DDE_SF_endonuclease_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
324
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.35837
Exp number, first 60 AAs:
0.01742
Total prob of N-in:
0.06246
outside
1  -  324
 
 

Population Genetic Test Statistics

Pi
129.020038
Theta
133.245402
Tajima's D
-0.306795
CLR
487.986707
CSRT
0.285585720713964
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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