Gene

KWMTBOMO02402

Pre Gene Modal

BGIBMGA013486

Annotation

PREDICTED:_NEDD8-conjugating_enzyme_UBE2F-like_[Amyelois_transitella]

Location

Bomo_Chr5(+):1197878-1199885      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.207

CDS

ATGATAACCCTTAATAGGAAACTTAAAAAGGAGCATTCTCCTCCAACAATAGGCCTGACCACGGAGCCAGTTAAAAGGATATCAATACGAGATAAATTGTTAGTAAAAGAAGTACAGGAGATGGAAGAGAACCTTCCAGCAACTTGTAGCGTGAAGTTCGAAGACCCAAATCTGCTTAGTGAATTCATATTAACAGTAGCTCCTGATGAGGGGTATTGGAAAGGTGGTAAATTTAAGTTTAGTGTCATTATAACTGAAGAATATAATATGGCTCCACCAAGAGTGAAGTGTTTAACAAAATTATGGCATCCTAATATTAATGTAGATGGAGACATCTGTTTGTCATTACTGAGACAGACTTCTATTGATGAGCATGGCTGGGCACCTACTAGGAGGCTCAAAGATGTTGTATGGGGCTTGAACTCACTTTTTACGGATCTGCTTAACTTTGATGACCCGTTAAACATAGAAGCAGCTGAAATGTACAACAAGGACAAAGTTCAATTTCAGGTTAAGGTACAGGAATATATTTCAAAGGGGAAAAGATGA

Protein

MITLNRKLKKEHSPPTIGLTTEPVKRISIRDKLLVKEVQEMEENLPATCSVKFEDPNLLSEFILTVAPDEGYWKGGKFKFSVIITEEYNMAPPRVKCLTKLWHPNINVDGDICLSLLRQTSIDEHGWAPTRRLKDVVWGLNSLFTDLLNFDDPLNIEAAEMYNKDKVQFQVKVQEYISKGKR

Similarity

Belongs to the ubiquitin-conjugating enzyme family.

Uniprot

H9JVC3   A0A2H1VI57   A0A2A4JL87   A0A2W1BDL2   A0A1E1WFH9   A0A194Q460   + More
A0A212ELL7   A0A0N0PCZ1   A0A2P8XMW8   A0A2J7QC45   A0A1B6D9C5   Q16ND7   A0A1B6DYY7   A0A1W7R7U1   A0A2M4AYF4   A0A182K9U4   A0A084WUS3   R4UN35   A0A1Q3G2P1   A0A1Q3G2M3   A0A182N2L3   A0A1Q3G2B6   A0A1B6F4U1   A0A2M4C0Z9   A0A182IKF2   W5JGP6   A0A182QWZ2   A0A182Y219   A0A067RKI0   A0A182RYR4   A0A182MS10   A0A182W9D9   A0A2M3ZJT1   A0A182P1S5   A0A182FKM7   A0A182WZY1   A0A182HPU7   A0A182VDZ4   A0T4G7   A0A1Q3G1V9   A0A1Q3G2L0   A0A336MI34   A0A1Q3G1W8   A0A1Q3G1P4   K7IR81   A0A2A3EIP1   A0A088A625   U5ESE0   A0A0L7R253   A0A0P6CYD8   A0A0P5QNP6   A0A0P5WTM9   A0A0P5WZI5   T1IP91   A0A0P5MJG0   A0A0P5DH13   A0A0N8AEP1   A0A310SSR5   E9GAU8   A0A1B0D5J1   A0A023FAT8   A0A224XZC7   A0A069DNV1   A0A0V0GBZ4   A0A0P4VYN8   R4G407   K1RU74   E2AYP0   F4WYU7   A0A232EVY7   A0A195F9B2   A0A151JBN7   A0A195CN95   A0A158NC59   A0A026WSW3   A0A0A9W0Y3   A0A1S3IHD5   A0A0P5N8D4   A0A154P5H3   E9IM20   A0A087TNN0   A0A0P5JK99   A0A0P5V2H9   A0A0N8BBM3   A0A182UCT1   E2B5C3   A0A1L8DSV9   A0A0P5ANV1   E0VAH4   A0A1B0CNM0   A0A210Q6I6   A0A0P6CF42   A0A1Z5L9W8   A0A2R5LA70   A0A1E1XVB2   G3TCR7   A0A0L8GC71   A0A0M9AC34   A0A0C9SB84   G3I238  

Pubmed

19121390    28756777    26354079    22118469    29403074    17510324    + More
24438588    20920257    23761445    25244985    24845553    12364791    14747013    17210077    20075255    21292972    25474469    26334808    27129103    22992520    20798317    21719571    28648823    21347285    24508170    30249741    25401762    26823975    21282665    20566863    28812685    28528879    29209593    26131772    21804562   

EMBL

BABH01036148    ODYU01002690    SOQ40519.1    NWSH01001115    PCG72536.1    KZ150114    + More
PZC73292.1    GDQN01005433    JAT85621.1    KQ459465    KPJ00328.1    AGBW02014024    OWR42382.1    KQ460393    KPJ15357.1    PYGN01001693    PSN33336.1    NEVH01016292    PNF26151.1    GEDC01015014    GEDC01005778    JAS22284.1    JAS31520.1    CH477828    EAT35862.1    GEDC01006396    JAS30902.1    GEHC01000431    JAV47214.1    GGFK01012502    MBW45823.1    ATLV01027105    KE525423    KFB53967.1    KC740721    AGM32545.1    GFDL01001019    JAV34026.1    GFDL01001014    JAV34031.1    GFDL01001102    JAV33943.1    GECZ01024574    JAS45195.1    GGFJ01009527    MBW58668.1    ADMH02001585    ETN61969.1    AXCN02001078    KK852415    KDR24376.1    AXCM01002417    GGFM01008043    MBW28794.1    APCN01003273    AAAB01008986    EAA43293.4    GFDL01001263    JAV33782.1    GFDL01000988    JAV34057.1    UFQT01001137    SSX29101.1    GFDL01001274    JAV33771.1    GFDL01001297    JAV33748.1    KZ288229    PBC31663.1    GANO01003290    JAB56581.1    KQ414667    KOC64851.1    GDIQ01086670    JAN08067.1    GDIQ01132057    JAL19669.1    GDIP01081961    JAM21754.1    GDIP01079659    JAM24056.1    JH431251    GDIQ01155794    JAK95931.1    GDIP01156332    JAJ67070.1    GDIP01154809    JAJ68593.1    KQ759828    OAD62660.1    GL732537    EFX83319.1    AJVK01025330    GBBI01000679    JAC18033.1    GFTR01003005    JAW13421.1    GBGD01003146    JAC85743.1    GECL01000393    JAP05731.1    GDKW01000864    JAI55731.1    ACPB03024258    GAHY01001206    JAA76304.1    JH818919    EKC38196.1    GL443983    EFN61403.1    GL888463    EGI60601.1    NNAY01001930    OXU22525.1    KQ981727    KYN37190.1    KQ979120    KYN22571.1    KQ977565    KYN01947.1    ADTU01011664    KK107109    QOIP01000008    EZA59130.1    RLU19369.1    GBHO01045069    GDHC01018714    JAF98534.1    JAP99914.1    GDIQ01153045    JAK98680.1    KQ434809    KZC06584.1    GL764129    EFZ18477.1    KK116068    KFM66719.1    GDIQ01197175    JAK54550.1    GDIP01121554    JAL82160.1    GDIQ01193675    JAK58050.1    GL445814    EFN89118.1    GFDF01004545    JAV09539.1    GDIP01196199    JAJ27203.1    DS235006    EEB10380.1    AJWK01020518    NEDP02004821    OWF44352.1    GDIP01009434    JAM94281.1    GFJQ02002865    JAW04105.1    GGLE01002171    MBY06297.1    GFAA01000378    JAU03057.1    KQ422664    KOF74449.1    KQ435697    KOX80786.1    GBZX01002128    JAG90612.1    JH001110    EGW10943.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000245037    + More
UP000235965    UP000008820    UP000075881    UP000030765    UP000075884    UP000075880    UP000000673    UP000075886    UP000076408    UP000027135    UP000075900    UP000075883    UP000075920    UP000075885    UP000069272    UP000076407    UP000075840    UP000075903    UP000007062    UP000002358    UP000242457    UP000005203    UP000053825    UP000000305    UP000092462    UP000015103    UP000005408    UP000000311    UP000007755    UP000215335    UP000078541    UP000078492    UP000078542    UP000005205    UP000053097    UP000279307    UP000085678    UP000076502    UP000054359    UP000075902    UP000008237    UP000009046    UP000092461    UP000242188    UP000007646    UP000053454    UP000053105    UP000001075   

PRIDE

H9JVC3    G3I238   

Pfam

PF00179   UQ_con        + More
PF01138   RNase_PH
PF03725   RNase_PH_C

Interpro

IPR000608   UBQ-conjugat_E2        + More
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR023313   UBQ-conjugating_AS       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR036345   ExoRNase_PH_dom2_sf       
IPR015847   ExoRNase_PH_dom2       
IPR001247   ExoRNase_PH_dom1       
IPR027408   PNPase/RNase_PH_dom_sf       

SUPFAM

SSF54495   SSF54495        + More
SSF55666   SSF55666       
SSF54211   SSF54211       

Gene 3D

3.10.110.10     3.30.230.70    

CDD

cd00195  UBCc

ProteinModelPortal

H9JVC3   A0A2H1VI57   A0A2A4JL87   A0A2W1BDL2   A0A1E1WFH9   A0A194Q460   + More
A0A212ELL7   A0A0N0PCZ1   A0A2P8XMW8   A0A2J7QC45   A0A1B6D9C5   Q16ND7   A0A1B6DYY7   A0A1W7R7U1   A0A2M4AYF4   A0A182K9U4   A0A084WUS3   R4UN35   A0A1Q3G2P1   A0A1Q3G2M3   A0A182N2L3   A0A1Q3G2B6   A0A1B6F4U1   A0A2M4C0Z9   A0A182IKF2   W5JGP6   A0A182QWZ2   A0A182Y219   A0A067RKI0   A0A182RYR4   A0A182MS10   A0A182W9D9   A0A2M3ZJT1   A0A182P1S5   A0A182FKM7   A0A182WZY1   A0A182HPU7   A0A182VDZ4   A0T4G7   A0A1Q3G1V9   A0A1Q3G2L0   A0A336MI34   A0A1Q3G1W8   A0A1Q3G1P4   K7IR81   A0A2A3EIP1   A0A088A625   U5ESE0   A0A0L7R253   A0A0P6CYD8   A0A0P5QNP6   A0A0P5WTM9   A0A0P5WZI5   T1IP91   A0A0P5MJG0   A0A0P5DH13   A0A0N8AEP1   A0A310SSR5   E9GAU8   A0A1B0D5J1   A0A023FAT8   A0A224XZC7   A0A069DNV1   A0A0V0GBZ4   A0A0P4VYN8   R4G407   K1RU74   E2AYP0   F4WYU7   A0A232EVY7   A0A195F9B2   A0A151JBN7   A0A195CN95   A0A158NC59   A0A026WSW3   A0A0A9W0Y3   A0A1S3IHD5   A0A0P5N8D4   A0A154P5H3   E9IM20   A0A087TNN0   A0A0P5JK99   A0A0P5V2H9   A0A0N8BBM3   A0A182UCT1   E2B5C3   A0A1L8DSV9   A0A0P5ANV1   E0VAH4   A0A1B0CNM0   A0A210Q6I6   A0A0P6CF42   A0A1Z5L9W8   A0A2R5LA70   A0A1E1XVB2   G3TCR7   A0A0L8GC71   A0A0M9AC34   A0A0C9SB84   G3I238  

PDB

3FN1     E-value=6.45312e-60,     Score=580

KEGG

101743026    K10687 ubiquitin-conjugating enzyme E2 F [EC:2.3.2.23] | (RefSeq) NEDD8-conjugating enzyme UBE2F-lik

PATHWAY

04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0016740   GO:0016874   GO:0019788   GO:0045116   GO:0016021  

Length:

182

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00113

Exp number, first 60 AAs:

3e-05

Total prob of N-in:

0.40472

outside

1  -  182

 

 

Pi

253.49774

Theta

188.74862

Tajima's D

1.079535

CLR

0

CSRT

0.680265986700665

Interpretation

Uncertain