Gene

KWMTBOMO02399

Pre Gene Modal

BGIBMGA013533

Annotation

PREDICTED:_dynein_assembly_factor_with_WDR_repeat_domains_1_[Amyelois_transitella]

Location

Bomo_Chr5(-):1122153-1125811      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.592 Mitochondrial   Reliability : 1.298

CDS

ATGAAGTTATTGAAATTTCACCTTCGATATTACCCTCCGGGATTGATATTGGAATACTCGCAAAAAGGAACGATAAAGAATAAGGAGATTGATCTGTTGGATCTAAATACCAATTCAAACATAAAAGAAGTGGCACAGCATCTCTGCACCAAAGAGGCGTTAATCACGGACGAAGTGAGAGACCGATTGGAGCAATGTCTCGACACCTTAAAGAAGAGAATCGAACACGAAGGACCGGCTGGCAAAAGATTCTACATCTACAAGACATTACAGACACATTTATTGCCACTAACCAATGTGGCCTTTGACAAAACTGGGAAAAGATGTTTGACGGGCAGCTACGACAGAACTTGTAAGATATGGGACGTCGAAACCGGTAAGGAGCTAAAGAGCTTCTCCGGACATCAGAATGTCGTCTATTCAGTTGGCTTCAATTTTCCTGCCTGCGATCGCGTCCTAACGGGCTCCTTTGATAAAACTGCAAAAGTCTGGGATCCTTCTTCGGGTGAATGTCTGGCGACACTGTGGGGGCACCGAGCCGAAGTCGTGGCTGCTCAGTTCAGTTCCAAGGGAGACCTTGCTGCCACCGGCTCTATGGATCATACCGCTAAATTATTTGACTTAAAAACTGGTACCGAAATACACACATACAATGGTCACACAGCGGAGGTGGTCGCTCTGCAGTTTGATCCCAATGAAGGACGCCGTTTGATTACTGGATCCTTTGATGGTACCATCGCTCTGTGGGACGTTAGAGCTAAAGAGTTAGTATCACTTAATCTAAATAATATTACATCCACATAA

Protein

MKLLKFHLRYYPPGLILEYSQKGTIKNKEIDLLDLNTNSNIKEVAQHLCTKEALITDEVRDRLEQCLDTLKKRIEHEGPAGKRFYIYKTLQTHLLPLTNVAFDKTGKRCLTGSYDRTCKIWDVETGKELKSFSGHQNVVYSVGFNFPACDRVLTGSFDKTAKVWDPSSGECLATLWGHRAEVVAAQFSSKGDLAATGSMDHTAKLFDLKTGTEIHTYNGHTAEVVALQFDPNEGRRLITGSFDGTIALWDVRAKELVSLNLNNITST

Uniprot

H9JVH0   A0A2A4JTX5   A0A2W1BDJ1   A0A2H1VAA1   A0A212ELM1   A0A194QA91   + More
A0A0N1PHM0   K7J563   A0A195F1A1   A0A0M8ZNI1   A0A195B2Q2   A0A0L7R3P4   A0A088AVV6   A0A195E6T5   A0A158NFY1   A0A182L5W6   A0A182WHL1   A0A182Y5N7   F4X6X2   E0VCG1   A0A182RRF7   A0A154PDZ8   A0A182PB24   A0A182NUZ6   A0A026VVY6   G4V7M5   A0A1S4FAH2   A0A067REJ0   A0A3M7QKS7   E2AMH6   A0A1B6KF52   A0A3Q0IS84   A0A151XC77   A0A1B6I6K7   A0A1B6FC70   A0A3Q0KI78   I7MMK9   C1BM69   A0A1U7RIR7   W5MNV1   A0A210PS13   R1BY77   A0A1S3SYB9   A0A3P9ACZ2   A0A3P9AE65   A0A336K8U9   A0A1R2CTK7   A0A1R2B4Z2   A0A0V0QQ61   W6L5J5   A0A182XCK5   A0A2C9JFA8   A0A1J1IZY9   A0A182IDY3   H2YPK6   A0A3L8D6Y1   A0A146XH47   A0A146XFZ2   A0A369S7K7   A0A1R2B2N8   F6UG25   A0A182M0T0   H3AA40   A0A2G8JYY1   K3X4I7   V3ZI80   A0A146XI61   G3W387   C5LLV7   A0A2D4BM24   A0A1W4YGW6   T1EF18   B3RLL7   A0A1R2BKP7   A0A2P4XD92   C3ZS55   G1KQC8   A0A0W8C2A9   A0A2G8K8K0   R7TY49   V9DZM1   W2VWN0   A0A3F2RPV6   W2PHU6   W2Y6Q2   A0A080Z309   W2HVY0   A0A329RY12   A0A2P4XFE0   A0A1W4Y770   A0A3B3T7G8   A0A225VM33   A0A1Q9C8A8   A0A1W4YGK9   H3GA86   A7SN68   G4ZNT8   F6TGM8   S9VIC3   K7FA48  

Pubmed

19121390    28756777    22118469    26354079    20075255    21347285    + More
20966253    25244985    21719571    20566863    24508170    22253936    17510324    24845553    30375419    20798317    16933976    28812685    23760476    25069045    26486372    24516393    15562597    30249741    30042472    17495919    9215903    29023486    23254933    21709235    18719581    28186564    18563158    29240929    16946064    17615350    19892987    23560078    17381049   

EMBL

BABH01036149    BABH01036150    NWSH01000594    PCG75461.1    KZ150114    PZC73289.1    + More
ODYU01001302    SOQ37322.1    AGBW02014024    OWR42385.1    KQ459465    KPJ00331.1    KQ460731    KPJ12642.1    AAZX01005033    KQ981864    KYN34243.1    KQ435969    KOX67900.1    KQ976662    KYM78560.1    KQ414663    KOC65510.1    KQ979568    KYN20893.1    ADTU01014832    GL888818    EGI57904.1    DS235053    EEB11067.1    KQ434870    KZC09498.1    KK107770    EZA47830.1    HE601624    CCD74941.1    KK852554    KDR21463.1    REGN01005919    RNA11575.1    GL440813    EFN65400.1    GEBQ01029932    JAT10045.1    KQ982314    KYQ57898.1    GECU01025176    JAS82530.1    GECZ01021963    JAS47806.1    GG662407    EAS05106.2    BT075698    ACO10122.1    AHAT01034251    NEDP02005537    OWF39244.1    KB867099    EOD15148.1    UFQS01000123    UFQT01000123    SSX00068.1    SSX20448.1    MPUH01000064    OMJ92328.1    MPUH01000950    OMJ71853.1    LDAU01000119    KRX04321.1    HF955091    CCW64776.1    CVRI01000065    CRL05773.1    APCN01004540    QOIP01000012    RLU16215.1    GCES01045394    JAR40929.1    GCES01045393    JAR40930.1    NOWV01000063    RDD42013.1    MPUH01001030    OMJ71019.1    AXCM01012117    AFYH01044252    AFYH01044253    AFYH01044254    AFYH01044255    MRZV01001074    PIK40905.1    GL376601    KB203567    ESO83902.1    GCES01045391    JAR40932.1    AEFK01135342    AEFK01135343    AEFK01135344    AEFK01135345    GG683299    EER02329.1    BBXB01000033    GAX95391.1    AMQM01003418    KB096134    ESO08141.1    DS985241    EDV28804.1    MPUH01000588    OMJ77195.1    NCKW01011429    POM63522.1    GG666670    EEN44634.1    LNFO01005408    KUF78164.1    MRZV01000785    PIK44295.1    AMQN01011376    KB308855    ELT96346.1    ANIZ01003664    ETI32289.1    ANIX01004139    ETP02168.1    MAYM02000837    MBDO02000138    MBAD02000682    RLN32379.1    RLN61942.1    RLN64084.1    KI669640    ETN00226.1    ANIY01004294    ETP30313.1    ANJA01003844    ETO61020.1    KI689532    KI676330    KI683061    KI696291    ETK72661.1    ETL26114.1    ETL79323.1    ETM32583.1    MJFZ01001227    MJFZ01000512    MJFZ01000195    RAW22727.1    RAW28108.1    RAW34617.1    NCKW01011146    POM64259.1    NBNE01003983    OWZ06392.1    LSRX01001525    OLP79107.1    DS566073    DS469717    EDO34865.1    JH159155    EGZ15406.1    ATMH01007999    EPY22960.1    AGCU01063966    AGCU01063967    AGCU01063968    AGCU01063969    AGCU01063970    AGCU01063971    AGCU01063972    AGCU01063973    AGCU01063974   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000002358    + More
UP000078541    UP000053105    UP000078540    UP000053825    UP000005203    UP000078492    UP000005205    UP000075882    UP000075920    UP000076408    UP000007755    UP000009046    UP000075900    UP000076502    UP000075885    UP000075884    UP000053097    UP000008854    UP000027135    UP000276133    UP000000311    UP000079169    UP000075809    UP000009168    UP000189705    UP000018468    UP000242188    UP000013827    UP000087266    UP000265140    UP000076407    UP000076420    UP000183832    UP000075840    UP000007875    UP000279307    UP000253843    UP000002280    UP000075883    UP000008672    UP000230750    UP000030746    UP000007648    UP000054177    UP000192224    UP000015101    UP000009022    UP000001554    UP000001646    UP000052943    UP000014760    UP000018721    UP000018958    UP000277300    UP000284657    UP000285883    UP000018817    UP000018948    UP000028582    UP000053236    UP000053864    UP000054423    UP000054532    UP000251314    UP000261540    UP000198211    UP000005238    UP000001593    UP000002640    UP000002281    UP000007267   

PRIDE

H9JVH0   

Pfam

PF00400   WD40        + More
PF14933   CEP19
PF03137   OATP
PF07648   Kazal_2

Interpro

IPR001680   WD40_repeat        + More
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR011044   Quino_amine_DH_bsu       
IPR011043   Gal_Oxase/kelch_b-propeller       
IPR029412   CEP19       
IPR020846   MFS_dom       
IPR036259   MFS_trans_sf       
IPR002350   Kazal_dom       
IPR004156   OATP       
IPR036058   Kazal_dom_sf       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50969   SSF50969       
SSF50965   SSF50965       
SSF103473   SSF103473       
SSF100895   SSF100895       

Gene 3D

2.130.10.10    

CDD

cd06174  MFS

ProteinModelPortal

H9JVH0   A0A2A4JTX5   A0A2W1BDJ1   A0A2H1VAA1   A0A212ELM1   A0A194QA91   + More
A0A0N1PHM0   K7J563   A0A195F1A1   A0A0M8ZNI1   A0A195B2Q2   A0A0L7R3P4   A0A088AVV6   A0A195E6T5   A0A158NFY1   A0A182L5W6   A0A182WHL1   A0A182Y5N7   F4X6X2   E0VCG1   A0A182RRF7   A0A154PDZ8   A0A182PB24   A0A182NUZ6   A0A026VVY6   G4V7M5   A0A1S4FAH2   A0A067REJ0   A0A3M7QKS7   E2AMH6   A0A1B6KF52   A0A3Q0IS84   A0A151XC77   A0A1B6I6K7   A0A1B6FC70   A0A3Q0KI78   I7MMK9   C1BM69   A0A1U7RIR7   W5MNV1   A0A210PS13   R1BY77   A0A1S3SYB9   A0A3P9ACZ2   A0A3P9AE65   A0A336K8U9   A0A1R2CTK7   A0A1R2B4Z2   A0A0V0QQ61   W6L5J5   A0A182XCK5   A0A2C9JFA8   A0A1J1IZY9   A0A182IDY3   H2YPK6   A0A3L8D6Y1   A0A146XH47   A0A146XFZ2   A0A369S7K7   A0A1R2B2N8   F6UG25   A0A182M0T0   H3AA40   A0A2G8JYY1   K3X4I7   V3ZI80   A0A146XI61   G3W387   C5LLV7   A0A2D4BM24   A0A1W4YGW6   T1EF18   B3RLL7   A0A1R2BKP7   A0A2P4XD92   C3ZS55   G1KQC8   A0A0W8C2A9   A0A2G8K8K0   R7TY49   V9DZM1   W2VWN0   A0A3F2RPV6   W2PHU6   W2Y6Q2   A0A080Z309   W2HVY0   A0A329RY12   A0A2P4XFE0   A0A1W4Y770   A0A3B3T7G8   A0A225VM33   A0A1Q9C8A8   A0A1W4YGK9   H3GA86   A7SN68   G4ZNT8   F6TGM8   S9VIC3   K7FA48  

KEGG

101743594    K19760 dynein assembly factor with WDR repeat domains 1 | (RefSeq) dynein assembly factor with WDR r

GO

GO:0016905   GO:0016021   GO:0005515   GO:0008270   GO:0020037   GO:0004674   GO:0007165   GO:0005488   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR11388  

Length:

267

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00101

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02767

outside

1  -  267

 

 

Pi

164.766962

Theta

155.945938

Tajima's D

0.120817

CLR

0.318796

CSRT

0.395930203489825

Interpretation

Possibly Positive selection