SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02398
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106708942_[Papilio_machaon]
Location
Bomo_Chr5(+):1115922-1121811      View in EpiBrowser
Location in the cell
Mitochondrial   Reliability : 1.088 Nuclear   Reliability : 1.783
 

Sequence

CDS
ATGCAGATCGTTGAGTCTCACATACCCCGCGCGCCCCTTTTGCGCGGGGACCTCGTAGGAGGTTCGGCCCTCTACCCGAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGGGTACCTCCCGCTCAGCGGGAGGAGAATCCCTCCGTGTGGCCGACTCGTCGGACGCACGCTGCCCCGCGTACTCTGGGGGGGGCAAAAACTGCCTAGACGTCAGGTCCGGGAAGGACGGAGTTCAAAAGAAGAAAATTATGTCCGAGAAGGACCCTGAAGTAAGCTCCTTAAGAGCCGATGTCGTGTCGGACAACGATATGGCCACAGTTGGTTCGGCCCAGTCGTCGATCCATTCGTCGCCGACACGACGACGGCGGAAAAGGGTGCTCAATATAAGTTCGGACGGGCTGAGTAGCAGCTCCGGCTCGGAGGCTCAGGATCCGACACGTGTGAAGCCCAGAGCAGTCACGCCGTCAAAGCGTGGACGGGGACGCCCTGCGACCACAGGGCAGTACGTTGGCATGGCCGCTGCCAGGCAAGCGTACCTCAAGGCACAAAAAGAGGAGAAGGAGCTCACTGAGAGCGCGCGCACCACACGCCACAAGAGGAGAGCGGCTGAAGGGTCTGTCCCTAAGCCCGATGCCGAGCGTAGGCTCCATCAAAGTGCAGAGGTGGCCCTGATGGTCGCCGCCAAATCCAGCAGCCCGAAGGGCACGTACGTGCGTGCACTGAAGGAGTTGGCAGTCACTGTCAAGGAGGCCACGGAGGACCTTGTGGGCTACACCGCAGCCGAAGAGGCTAAGAGACTGCGAGCGGTCAACGTCAAGCAGGAGCAGGAGATCCTGCAACTGCGTAAGGAGCTCGATGAAGTTAGAAGGGAGTTGGCGAGGGTTTCGCGGGTGCTAGCGTTGCCCACATCGACTGCGACCCCGGCCCCGAACACCAAGGAGGAAGAGGAGGAGTTGCGCCTACAGCGTATTATGCGAGCTGTCGGCACTATGCTCGACGCTCGCTTTGAAGGGCTGGAGGCACGGCTTCTACCGGAGCCCCGAATGCGACCACCGCTAGCGGCGGACAAGCAGAGGAGCCGGGAAAAATCGTCTAATCCCCCTGTCGTCGTTGACGCTGCACCGGATGCGGCACCGTCATCAGTGCCACCGATGACATTGGCGAAAAAGAGGATGCGTGGCCCCAAGAGAAGTGTCACCGCGCAAGCGGCTTCATCCGAAACGCACACCTTCCTCCCGGCTCCAGCTTCCATGATCGAGAGCTGGTCAACGGTCACCCGTAGGGATGCTCGACCGAGGGAGGAAGCAGTGAGGACGCTTCCAGCGGCAGCTATCGCTGAAGCGGAAAGGAAAGACCGGTCTTCTGTAAAGAGGAAAGAGAAGAAGCTGCGCCCTCCACGCACTCAGGCCGTTGTCCTCAAGCTGCAACCAGAGGCCGTGGAAAGAGGACTCACGTACCGCACTGTACTCGCCGAAGCGAGGGCCAAGGTAGATCCTGGGGCACTTGGAATACCCATCCAGCGCATCCGGTCTGCAGTGACTGGGTCTAAGGTGCTGGTAGTGGAAGGTGCAGACCAGAGCGCCAAGGCCGATCTCCTGGCCCAAAAGCTTCGTGAGGTTCTGCCCGCAGAAGGGGTCATAGTGACCAGGCCAGTAACGACTGCAGCCATCCGCATCAGCGGACTGGACGACTCCCTGATGCCGGAGGAACTTACCGCGGAGCTTGCCCGGATTGGCGAATGCGCTCCTGGTGCGGTGAAGATCGGAGACATCAAGTATGGCCCAGGCGGGATGGGTCAAGTATTGGTCCGGTTGCCCGTCGTTGCCACGATGAAGGTTCTCGCCGTTCCAAAACTGAGGGTTGGTTGGAGCGTGCTCCGCGCTTGTTTGTTAGAGGCTAAGAAGCTACAGTGCTTCCGATGCCATGAGCTAGGGCACGTGAGCGCCCGATGTCCTTCGTCGGTCGACCGCAGCTGGGATTGTTATCGGTGCGGCCAGACCGGCCACGTAGCGGCCGGCTGCTCTCTTGCACCACACTGCGCTGGGAATCTCAACCATTGCGCCAGAGCTCAGGACCTTTTGTTCCAGAGCATGGCGGAGGGGTTGACCCATCTTGCGGTGGTCGCCGAGCCGTATCGGGTCCCTTCGAGCCCCGATTGGGCGGCCGATTTGGAGGGCCGAGTGGCAATCATCCGGCGTTGTTGTGTGGGTGCTCCGCCTACGTTTGCCGTTGTTGAAAGAGGTCGCGGCTTCGTTGCCGTCCTCTGGGCCGAGATATTCGTGTTGGGAGTGTACTTTTCCCCAAACAGGACGCTCGCCGAGTTTGAGGTTTTCCTCAGCGAGCTCAGCCGCGTCGTTGGAAGGTCGCACTTCCGACGGATTCTCGTTCTAGGTGACCTAAATGCCAAGTCATTGTCTTGGGGTTCCTCTAGGACGTGCCCCAGAGGTAGAGCGATGGAGGAGTGGCTGGTCGGAAGCGCTCTCCTCATCCTCAATCGCGGTACGGAACTCACATGCGTGCGACGTTTGGACGGGTCCGTGGTGGACGTTACATTCGCCACGCCTGACGTCGCATATCGCGTACGCGGTTGGGCGGTGATGGTTGGCGAGGAGACCCTCTCCGACCACCGTTACATCCGATTCAGTGTCGCCGCGACCCCGGTGGGTTCTGTTCGGGGCTTTTCCTTGCCCATCAGTGGCAGCGCTAGGGGTCCTCGTTGGGCCCAGAAGCGCCTCAACATCGAGCGGTTGCGTGAGGCGGCCATAGTGCAGGCGTGGCGTCTTGACTCGCTTGGCGAGCCAGCAGACGTGTGCGAGGGGGTGGAGCGTCTGCGCGAGGCAATGTCACGGGTGTGTGACGCTGCTATGCCTCGCGTGAGAGCTCTCGCTCCTAAGCGCCAAGTTCATTGGTGGACCGAGGAGATCGCCAGCCAGCGCCGGCTATGCGATATTAGTCGTCGCACATACCAGCGATATCGACGACGAAGAACGCGCCGGGACCCCGACGAGGAGGACCGCCTGTACGAAGTGTACAGGACGGCGATAAGAACCCTGCGCTTGGCTATCGGGGAGGCGAAGGAGGCCGCCTGGAACGACCTACTGGCCTCGCTGGACCGTGACCCGTGGGGGCGGCCCTACAGGCTGGCGCGTAATGCGCTTCGCCGTTGGGCTCCTCCCGCAACCAGCACCCTGCCGCCGGAAACATTGCAGCGGGTAGTCGGGGGTCTGTTTCCCGATTTATCCGGGACGGCCTTCGTCCCCCCTGTGATGACAATGGCGCGGATTGCTGATAGCGAAGAGCTTGAGGACGTCTCCCAGGTGGAGTTCGATTTGGCTGTGCAGAGGATGCGGGCTAAGCGCACGGCACCCGGTCCCGATGGGATCTCGTCCCAAGCGTGGGCGCTCGCCTTGACAGGTGACGGCTTGGGGCCTGCCCTCCAAGGGCTATTCAGCAGGTGCCTCCGTGAGGGCAGGTTCCCAGAGCCATGGAAGACTGGTCGGCTTGTCCTTATTCCTAAGGAAGGCCGGCCACGTGACGAGCCAAGCGGGTACCGCCCAATCGTCGTGCTGGACGAGGCTGGTAAGCTCCTCGAGCGCATCGTCGCCAGTCGCCTCGTCCAGCACCTCGAAAGCGTTGGGCCTGACCTGGCTCCTAACCAATATGGTTTCCGGAGAGGTCGCTCCACCATGGACGCGGTCTTGCGCGTCCGCCACCTCTCCGATCGTGCGTGCTCCGAGGGGGGCGTGTTGTTGGCTGTGTCGATTGATATCGCCAACGCCTTCAACACGATCCCTTGGAGCACGATCGTGGAATCGCTCCGGTTTCACCGCGTCCCCCCTAGTCTCCGCACCCTGATAGAGGATTACCTCTCAGGGCGAAATGTAGTCTTCCCCGAGAGGAGGGGGTGGGGACGGAAAGCGGTGTCGTGCGGGGTCCCGCAGGGGTCGGTACTGGGACCACTCCTGTGGGACATCGGTTTCGACTGGGTCCTGCGCGGTGCTAGCCTGCGTGGCGTCGACGTAGTGTGCTATGCCGACGACACGCTGGTGACGGCCCGCGGAGCCGACTACAGAGCCGCAGCGATCCTTGCGACGGCGGCGGTCTCCACCGTCGTTAGTCGCATTCGGAGATTAGGTCTTGAGGTGGCCCTCCGCAAGTCCGAAGCGGTGTGCTTTCACCCAGTCCGGAGGAGACCTCCTCCGGGAGCGAATCTCATAGTCGGCGGAGTATCGATCGCTGTCCAGCCGAAGCTCAAATATTTGGGCCTTGTGCTGGACAGTCGATGGCGCTTCGACCACCACTTTGGTGAGTTAGTCCCAAAGCTGCTGGGGATGGCGGGCGCACTAGCCCGTCTTCTCCCCAACGTCGGTGGTTGCAGCGCCGGCGTCCGGCGTCTGTACCTGGGGGTCGTGCGCAGTATGGCTTTGTACGGCGCTCCCGTGTGGTCGCCCGCACTCTCTGCGCGCAATGCAGCTTTGCTGCTACGAGTGCAGCGGGTGCTCGCGGTGAGAGTCATCAGGGGGTACCGTACGATCTCCCGGGAGGTCGCCTGCGCCCTCGCCGGTTCCCTTCCTTGGGATCTCGAGGCTGAGGTAGCAGCTGCGGTATACCGGCGTAGAACACAGTCCCTGAGTCGGGGACGGACGCCCGGCCCGTCGGCTGTCGGTCGGTGGAGGCGTGCTGCGCGTCATCTGGCGTACGCCAAGTGGAGGGAGCGGTTGCTGGAGGAGCTTGGCCAAGCTTCAGTCACTCGCCGACGCACCCTCGAGGCCCTGGTGCCCGTGCTGGAGGCATGGTCAGATAGACGACACGGCGTGCTCTCCTTCCACTTAACGCAGGTCCTCTCGGGGCATGGCTGCTTCGGGAGGTACCTGTGGAAGGTCTGCAGGAGAGAGCCACATCCGGGTTGCCACCAGTGCGGGCATCCGGACGATGACGCTCAGCACGCACTCGAAGCGTGCCCGCGTTGGGAGCGCTCGCGGCGAGACCTCATCGCGGTGCTGGGGAGAGACCTCTCCTTGCGGGCTGTCATCGCCCGCATGCTAGAGGACCAGAATTCTTGGGAGGCCATGACCAGGTTTTGCGACCTGGTCATGGCGTTCCGTGAGGCTGAGGAGCGCGAAAGGGAGTGGGATCCCTCTTCGGCTTCACAGCGAAGAAGGCGGAGTGGGCGGCACGGGCGCGAAGCTCCCGTTCATCTCCCGTAG
Protein
MQIVESHIPRAPLLRGDLVGGSALYPKKKKKKKKKEGTSRSAGGESLRVADSSDARCPAYSGGGKNCLDVRSGKDGVQKKKIMSEKDPEVSSLRADVVSDNDMATVGSAQSSIHSSPTRRRRKRVLNISSDGLSSSSGSEAQDPTRVKPRAVTPSKRGRGRPATTGQYVGMAAARQAYLKAQKEEKELTESARTTRHKRRAAEGSVPKPDAERRLHQSAEVALMVAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSRVLALPTSTATPAPNTKEEEEELRLQRIMRAVGTMLDARFEGLEARLLPEPRMRPPLAADKQRSREKSSNPPVVVDAAPDAAPSSVPPMTLAKKRMRGPKRSVTAQAASSETHTFLPAPASMIESWSTVTRRDARPREEAVRTLPAAAIAEAERKDRSSVKRKEKKLRPPRTQAVVLKLQPEAVERGLTYRTVLAEARAKVDPGALGIPIQRIRSAVTGSKVLVVEGADQSAKADLLAQKLREVLPAEGVIVTRPVTTAAIRISGLDDSLMPEELTAELARIGECAPGAVKIGDIKYGPGGMGQVLVRLPVVATMKVLAVPKLRVGWSVLRACLLEAKKLQCFRCHELGHVSARCPSSVDRSWDCYRCGQTGHVAAGCSLAPHCAGNLNHCARAQDLLFQSMAEGLTHLAVVAEPYRVPSSPDWAADLEGRVAIIRRCCVGAPPTFAVVERGRGFVAVLWAEIFVLGVYFSPNRTLAEFEVFLSELSRVVGRSHFRRILVLGDLNAKSLSWGSSRTCPRGRAMEEWLVGSALLILNRGTELTCVRRLDGSVVDVTFATPDVAYRVRGWAVMVGEETLSDHRYIRFSVAATPVGSVRGFSLPISGSARGPRWAQKRLNIERLREAAIVQAWRLDSLGEPADVCEGVERLREAMSRVCDAAMPRVRALAPKRQVHWWTEEIASQRRLCDISRRTYQRYRRRRTRRDPDEEDRLYEVYRTAIRTLRLAIGEAKEAAWNDLLASLDRDPWGRPYRLARNALRRWAPPATSTLPPETLQRVVGGLFPDLSGTAFVPPVMTMARIADSEELEDVSQVEFDLAVQRMRAKRTAPGPDGISSQAWALALTGDGLGPALQGLFSRCLREGRFPEPWKTGRLVLIPKEGRPRDEPSGYRPIVVLDEAGKLLERIVASRLVQHLESVGPDLAPNQYGFRRGRSTMDAVLRVRHLSDRACSEGGVLLAVSIDIANAFNTIPWSTIVESLRFHRVPPSLRTLIEDYLSGRNVVFPERRGWGRKAVSCGVPQGSVLGPLLWDIGFDWVLRGASLRGVDVVCYADDTLVTARGADYRAAAILATAAVSTVVSRIRRLGLEVALRKSEAVCFHPVRRRPPPGANLIVGGVSIAVQPKLKYLGLVLDSRWRFDHHFGELVPKLLGMAGALARLLPNVGGCSAGVRRLYLGVVRSMALYGAPVWSPALSARNAALLLRVQRVLAVRVIRGYRTISREVACALAGSLPWDLEAEVAAAVYRRRTQSLSRGRTPGPSAVGRWRRAARHLAYAKWRERLLEELGQASVTRRRTLEALVPVLEAWSDRRHGVLSFHLTQVLSGHGCFGRYLWKVCRREPHPGCHQCGHPDDDAQHALEACPRWERSRRDLIAVLGRDLSLRAVIARMLEDQNSWEAMTRFCDLVMAFREAEEREREWDPSSASQRRRRSGRHGREAPVHLP

Summary

Uniprot
A0A0J7KQK3   A0A0J7NFZ0   A0A0J7N0R3   A0A0J7KRB8   A0A0J7KFH2   X1WJY4   + More
A0A0J7KIS5   J9KM84   X1WZ64   A0A139WAH4   A0A139WN93   A0A139WNC9   J9JY94   J9LA43   X1WXT5   J9KNS1   J9K6F0  
Pubmed
18362917    19820115   
EMBL
LBMM01004272    KMQ92618.1    LBMM01005474    KMQ91485.1    LBMM01012412    KMQ86235.1    + More
LBMM01003988    KMQ92922.1    LBMM01008278    KMQ89009.1    ABLF02011238    LBMM01006977    KMQ90149.1    ABLF02018942    ABLF02041885    ABLF02011183    ABLF02041884    KQ971388    KYB24913.1    KQ971310    KYB29499.1    KYB29500.1    ABLF02007989    ABLF02018098    ABLF02004854    ABLF02041317    ABLF02018808    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460   
Proteomes
UP000036403    UP000007819    UP000007266   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
3.60.10.10    
ProteinModelPortal
A0A0J7KQK3   A0A0J7NFZ0   A0A0J7N0R3   A0A0J7KRB8   A0A0J7KFH2   X1WJY4   + More
A0A0J7KIS5   J9KM84   X1WZ64   A0A139WAH4   A0A139WN93   A0A139WNC9   J9JY94   J9LA43   X1WXT5   J9KNS1   J9K6F0  
PDB
1WDU     E-value=1.59601e-06,     Score=130

Ontologies

KEGG
105842185    no KO assigned | (RefSeq) uncharacterized LOC105842185
GO
GO:0008270   GO:0003676   GO:0003964   GO:0016021   GO:0020037   GO:0004674   GO:0007165   GO:0005488   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

Topology

Length:
1734
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05311
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.00008
outside
1  -  1734
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
102.652478
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号