Gene

KWMTBOMO02397

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr5(+):1090942-1092666      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.321

CDS

ATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACAGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTTCTCTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCACCGGTCGCCGCCGACCCATTTAGCTTTATTCGCTGACGATACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAACCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGTGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCTTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCGTCGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATCCAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCACGCAGGAGCCAGTCACCGTCGACGCTCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTCTAACACTAGGAGCAGGCTTAGGGACCTCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA

Protein

MANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNSLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIHRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALTLGQWFRKWRIDINPVKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRSRHVLTDPSDPITFALDAFSSNTRSRLRDLGNRTRRTRQRVRRAT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
O96546   A0A194Q1H8   O96544   A0A2S2PR14   V5GNF3   V5GNJ2   A0A139WA11   A0A1Y1NA23   X1WXU3   V5I850   A0A2S2Q823   X1WMU5   A0A139W8G9   X1WLB2   A0A087U2S8   A0A087T1W0   X1X928   J9KKL3   X1WWC4   A0A087V0P8   A0A2S2RAN7   A0A2S2PX53   J9KCZ4   A0A2S2PH29   J9KC83   A0A1Y1M7E9   X1WNI2   O76197   A0A2S2QJM7   A0A023EZE6   A0A224XF24   A0A087TMJ9   A0A2S2NGV8   A0A2S2NJB5   X1WL89   A0A023EYS8   A0A2S2QTZ8   X1WZH0   A0A2S2N814   A0A2J7RIW7   X1WN18   A0A2J7Q059   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7QUJ9   A0A2J7RM10   A0A2J7PMP6   J9JS95   A0A2J7RB54   A0A2J7Q5G9   A0A2J7RPU2   A0A2J7QEZ4   A0A2J7QQP1   A0A2J7RS77   A0A2J7PU96   A0A139W8R7   A0A2S2PPK8   A0A2J7PVX3   J9LC21   A0A2J7PMP9   A0A2A4K8E7   A0A2J7QFL0   A0A2J7R7D0   A0A1Y1LKN6   A0A2J7R6U1   A0A2J7R8R8   A0A2J7RKP3   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7PDM0   A0A2J7Q6J2   A0A2J7QR37   A0A2J7RRU8   A0A3N5Z7I3   A0A2J7PBY3   A0A2J7QY69   A0A2J7Q1Y9   A0A2M4BDV6   A0A2J7QB68   A0A2M4BD67   A0A2H8TWD9   A0A0A9YJ00   A0A2J7PDS9   A0A2S2QEE0   A0A0J7KBP6   A0A0L0CBP5   A0A2A4K918   A0A2J7RL12   Q95SX7   A0A2J7QPI2  

EC Number

2.7.7.49

Pubmed

10333566    23652563    26354079    10380107    18362917    19820115    + More
28004739    8934517    25474469    30086797    25401762    26108605    7753626    12537569   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459580    KPI99178.1    AF081101    AAC72919.1    GGMR01019198    MBY31817.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GEZM01008457    JAV94772.1    ABLF02008933    GALX01005300    JAB63166.1    GGMS01004685    MBY73888.1    ABLF02014862    ABLF02014866    ABLF02061908    KQ973342    KXZ75569.1    ABLF02042518    ABLF02057746    KK117880    KFM71667.1    KK113014    KFM59099.1    ABLF02066620    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KL813758    KFM83187.1    GGMS01017914    MBY87117.1    GGMS01000737    MBY69940.1    ABLF02008463    GGMR01016114    MBY28733.1    ABLF02033757    GEZM01038405    JAV81653.1    ABLF02008153    ABLF02008462    ABLF02008464    AF012049    AAC24972.1    GGMS01008766    MBY77969.1    GBBI01004571    JAC14141.1    GFTR01008038    JAW08388.1    KK115908    KFM66338.1    GGMR01003407    MBY16026.1    GGMR01004661    MBY17280.1    ABLF02019349    ABLF02041900    GBBI01004395    JAC14317.1    GGMS01012005    MBY81208.1    ABLF02034467    GGMR01000676    MBY13295.1    NEVH01003017    PNF40781.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01020071    PNF21969.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01010546    PNF32261.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    ABLF02028535    ABLF02028545    NEVH01005938    PNF38077.1    NEVH01017559    PNF23833.1    NEVH01001355    PNF42855.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01012084    PNF30905.1    NEVH01000280    PNF43672.1    NEVH01021205    PNF19912.1    KQ973073    KXZ75680.1    GGMR01018716    MBY31335.1    NEVH01020940    PNF20481.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01023961    PNF17613.1    NWSH01000032    PCG80497.1    NEVH01014858    PNF27387.1    NEVH01006736    PNF36716.1    GEZM01053022    JAV74219.1    NEVH01006754    PNF36554.1    NEVH01006721    PNF37225.1    NEVH01002716    PNF41415.1    NEVH01007838    PNF34986.1    NEVH01019964    PNF22161.1    NEVH01026386    PNF14434.1    NEVH01017470    PNF24199.1    NEVH01011985    PNF31054.1    NEVH01000598    PNF43535.1    RPOV01000134    RPJ78669.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01019376    PNF22596.1    GGFJ01001857    MBW50998.1    NEVH01016302    PNF25823.1    GGFJ01001858    MBW50999.1    GFXV01006424    MBW18229.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01026154    PNF14491.1    GGMS01006359    MBY75562.1    LBMM01010106    KMQ87671.1    JRES01000644    KNC29657.1    PCG80496.1    NEVH01002704    PNF41489.1    AY060438    AAL25477.1    NEVH01012089    PNF30491.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000218220    + More
UP000036403    UP000037069   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    K9N5J5    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
PF13358   DDE_3

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR038717   Tc1-like_DDE_dom       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
O96546   A0A194Q1H8   O96544   A0A2S2PR14   V5GNF3   V5GNJ2   A0A139WA11   A0A1Y1NA23   X1WXU3   V5I850   A0A2S2Q823   X1WMU5   A0A139W8G9   X1WLB2   A0A087U2S8   A0A087T1W0   X1X928   J9KKL3   X1WWC4   A0A087V0P8   A0A2S2RAN7   A0A2S2PX53   J9KCZ4   A0A2S2PH29   J9KC83   A0A1Y1M7E9   X1WNI2   O76197   A0A2S2QJM7   A0A023EZE6   A0A224XF24   A0A087TMJ9   A0A2S2NGV8   A0A2S2NJB5   X1WL89   A0A023EYS8   A0A2S2QTZ8   X1WZH0   A0A2S2N814   A0A2J7RIW7   X1WN18   A0A2J7Q059   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7QUJ9   A0A2J7RM10   A0A2J7PMP6   J9JS95   A0A2J7RB54   A0A2J7Q5G9   A0A2J7RPU2   A0A2J7QEZ4   A0A2J7QQP1   A0A2J7RS77   A0A2J7PU96   A0A139W8R7   A0A2S2PPK8   A0A2J7PVX3   J9LC21   A0A2J7PMP9   A0A2A4K8E7   A0A2J7QFL0   A0A2J7R7D0   A0A1Y1LKN6   A0A2J7R6U1   A0A2J7R8R8   A0A2J7RKP3   A0A2J7R2E1   A0A2J7Q0Q6   A0A2J7PDM0   A0A2J7Q6J2   A0A2J7QR37   A0A2J7RRU8   A0A3N5Z7I3   A0A2J7PBY3   A0A2J7QY69   A0A2J7Q1Y9   A0A2M4BDV6   A0A2J7QB68   A0A2M4BD67   A0A2H8TWD9   A0A0A9YJ00   A0A2J7PDS9   A0A2S2QEE0   A0A0J7KBP6   A0A0L0CBP5   A0A2A4K918   A0A2J7RL12   Q95SX7   A0A2J7QPI2  

KEGG

101737297    no KO assigned | (RefSeq) esterase FE4-like

GO

GO:0003964   GO:0004519   GO:0016021   GO:0008270   GO:0003676   GO:0006313  

Length:

450

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.17979

Exp number, first 60 AAs:

0.00591

Total prob of N-in:

0.03678

outside

1  -  450

 

 

Pi

8.731954

Theta

12.518617

Tajima's D

-0.695558

CLR

85.925828

CSRT

0.2002399880006

Interpretation

Uncertain