Gene

KWMTBOMO02391

Annotation

PREDICTED:_mutS_protein_homolog_5-like?_partial_[Plutella_xylostella]

Location

Bomo_Chr5(+):996284-998761      View in EpiBrowser

Full name

DNA mismatch repair protein      

Location in the cell

PlasmaMembrane   Reliability : 4.009

CDS

ATGTCGCTTACATTCCACCACACGGGCAGTTCACAGTATCAAAAGTTCGGTAGGGCAATCAGCCAATTGACCAGGAGCATAGTTGTTAAAACATTATTAATATCTCCAGGTCTGATAGTGTATTTAGCTCACATCGGTAGCTTCGTGCCGGCTGACTCGGCTGTCATAGGCATCGTGAGTCACATATTCACAAGGATGCAGTCAACTGAATGCATCGCAGCGCACATGTCAGCTTTCCTAATAGATTTGAGACAGATGGCTCTGGTTCTACAAGAGTCGACGAGTAGCAGCCTGGTGCTGGTGGACGAGTTCGGCAAAGGCACAGCGCGGCGCGACGGGGCGGCCCTGCTGGCGGCCGCGCTGGGCGCCGTGCTGGCTCGCGCGCGCCGCCCGCACGTGCTGCTCGCCACGCACTTCCTGCAGCTGCACCACTACATCGCTCCCTCGCCACTACTCACGTTCTTGGTAATATTGACAACGCCATTCTTATAG

Protein

MSLTFHHTGSSQYQKFGRAISQLTRSIVVKTLLISPGLIVYLAHIGSFVPADSAVIGIVSHIFTRMQSTECIAAHMSAFLIDLRQMALVLQESTSSSLVLVDEFGKGTARRDGAALLAAALGAVLARARRPHVLLATHFLQLHHYIAPSPLLTFLVILTTPFL

Description

Component of the post-replicative DNA mismatch repair system (MMR).

Similarity

Belongs to the DNA mismatch repair MutS family.

Uniprot

A0A194Q4R3   A0A0N1IDJ9   A0A2H1WF92   A0A2A4JH95   A0A1B6ELS4   A0A146S8D9   + More
A0A3B3SSG7   A0A146TVZ6   T1KLA5   A0A146RXM7   A0A2S2NX47   A0A044U217   A0A0V1IFF7   A0A0V1IFG5   A0A0V1FV26   A0A0V0XWS9   A0A0V0XWM4   A0A182EPI0   A0A0V0XWQ3   A0A0V0XXA2   A0A0V0XWC5   A0A0R3S1D7   A0A0R3QYZ0   A0A1A8C3W8   A0A0V1JCF7   A0A0V1JCH7   A0A0V1JDR0   A0A0V1JCH6   A0A0V1JCP0   A0A0V1JCF3   A0A0V1JCL3   A0A0V1JCH1   A0A3P6U166   A0A158PYW5   A0A1I9G7E3   A0A0N4TRY3   A0A3B3XQX1   A0A183H916   A0A2R6WVC8   A0A2R6WVB2   V4AGJ6   A0A210PVY1   A0A2R6WVC2   A0A2R6WVC4   A0A3B5N002   A0A1S0UGB4   T1ETZ2   A0A315WBZ4   A0A3P9PXH0   A0A1I7VHQ1   A0A1A8QLR5   A0A2S2QKF9   J9LB75   A0A2R6WVC0   A0A238C477   A0A2R6WVC5   A0A0V1N1Y6   A0A0V1HY88   A0A1A8AJJ1   A0A1A7ZE46   A0A158R5J7   A0A1B6KRA6   A0A3B4BAL3   A0A3P8RTP1   A0A0K0MXG8   A0A0V0RZG1   A0A0V0RZK2   A0A0V0RZU3   A0A2J6SCK3   A0A3M6UXS0   J9EWB9   A0A3P7DED9   A0A1B6CPF5   A0A3P8RUS4   A0A0G2USR8   A7EN13   A0A1D9QID6   F6YKR1   A0A2B4SNF7  

Pubmed

26354079    29240929    22919073    17885136    23254933    28812685    + More
29703783    25217238    25463417    30382153    21876677    28204478    12481130    15114417   

EMBL

KQ459465    KPJ00339.1    KQ460731    KPJ12649.1    ODYU01008277    SOQ51721.1    + More
NWSH01001581    PCG70800.1    GECZ01030946    JAS38823.1    GCES01109896    JAQ76426.1    GCES01089091    JAQ97231.1    CAEY01000211    GCES01113233    JAQ73089.1    GGMR01009174    MBY21793.1    CMVM020000166    JYDS01000202    KRZ21514.1    KRZ21515.1    JYDT01000028    KRY89713.1    JYDU01000114    KRX92357.1    KRX92359.1    UYRW01005370    VDM93755.1    KRX92362.1    KRX92361.1    KRX92360.1    UZAG01017954    VDO37445.1    HADZ01010328    SBP74269.1    JYDV01000109    KRZ32674.1    KRZ32672.1    KRZ32677.1    KRZ32673.1    KRZ32676.1    KRZ32678.1    KRZ32671.1    KRZ32675.1    UYRX01001012    VDK87685.1    LN856635    CDQ04605.1    UZAD01013228    VDN92582.1    UZAJ01002852    VDO38463.1    KZ772727    PTQ37796.1    PTQ37797.1    KB202050    ESO92536.1    NEDP02005458    OWF40626.1    PTQ37798.1    PTQ37799.1    JH712232    EJD74740.1    AMQM01001381    KB097495    ESN96325.1    NHOQ01000034    PWA33565.1    HAEG01013243    SBR94422.1    GGMS01009046    MBY78249.1    ABLF02037161    PTQ37801.1    KZ269978    OZC12272.1    PTQ37803.1    JYDO01000015    KRZ78056.1    JYDP01000017    KRZ15548.1    HADY01016368    SBP54853.1    HADY01002273    SBP40758.1    GEBQ01026010    JAT13967.1    KM283882    AKI32379.1    JYDL01000054    KRX19902.1    KRX19904.1    KRX19903.1    KZ613937    PMD48501.1    RCHS01000531    RMX58389.1    ADBV01000563    EJW86906.1    UYWW01000332    VDM08160.1    GEDC01021936    JAS15362.1    KP259582    AKI32545.1    CH476628    EDO04229.1    CP017826    APA14707.1    LSMT01000056    PFX30047.1   

Proteomes

UP000053268    UP000053240    UP000218220    UP000261540    UP000015104    UP000024404    + More
UP000054805    UP000054995    UP000054815    UP000077448    UP000271087    UP000050640    UP000050602    UP000054826    UP000277928    UP000006672    UP000038020    UP000278627    UP000261480    UP000050787    UP000030746    UP000242188    UP000261380    UP000015101    UP000242638    UP000095285    UP000007819    UP000054843    UP000055024    UP000046393    UP000261520    UP000265080    UP000054630    UP000235786    UP000275408    UP000004810    UP000270924    UP000001312    UP000177798    UP000008144    UP000225706   

Pfam

PF00488   MutS_V        + More
PF01146   Caveolin
PF05192   MutS_III
PF05190   MutS_IV
PF00300   His_Phos_1
PF11979   DUF3480
PF01363   FYVE
PF05188   MutS_II

Interpro

IPR000432   DNA_mismatch_repair_MutS_C        + More
IPR027417   P-loop_NTPase       
IPR036187   DNA_mismatch_repair_MutS_sf       
IPR001612   Caveolin       
IPR007696   DNA_mismatch_repair_MutS_core       
IPR017261   DNA_mismatch_repair_MutS/MSH       
IPR007861   DNA_mismatch_repair_MutS_clamp       
IPR011184   DNA_mismatch_repair_Msh2       
IPR030387   G_Bms1/Tsr1_dom       
IPR036678   MutS_con_dom_sf       
IPR013078   His_Pase_superF_clade-1       
IPR029033   His_PPase_superfam       
IPR000306   Znf_FYVE       
IPR022557   DUF3480       
IPR011011   Znf_FYVE_PHD       
IPR017455   Znf_FYVE-rel       
IPR013083   Znf_RING/FYVE/PHD       
IPR007860   DNA_mmatch_repair_MutS_con_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF48334   SSF48334       
SSF53150   SSF53150       
SSF53254   SSF53254       
SSF57903   SSF57903       

Gene 3D

3.30.420.110     3.40.50.1240     3.30.40.10    

CDD

cd07067  HP_PGM_like

ProteinModelPortal

A0A194Q4R3   A0A0N1IDJ9   A0A2H1WF92   A0A2A4JH95   A0A1B6ELS4   A0A146S8D9   + More
A0A3B3SSG7   A0A146TVZ6   T1KLA5   A0A146RXM7   A0A2S2NX47   A0A044U217   A0A0V1IFF7   A0A0V1IFG5   A0A0V1FV26   A0A0V0XWS9   A0A0V0XWM4   A0A182EPI0   A0A0V0XWQ3   A0A0V0XXA2   A0A0V0XWC5   A0A0R3S1D7   A0A0R3QYZ0   A0A1A8C3W8   A0A0V1JCF7   A0A0V1JCH7   A0A0V1JDR0   A0A0V1JCH6   A0A0V1JCP0   A0A0V1JCF3   A0A0V1JCL3   A0A0V1JCH1   A0A3P6U166   A0A158PYW5   A0A1I9G7E3   A0A0N4TRY3   A0A3B3XQX1   A0A183H916   A0A2R6WVC8   A0A2R6WVB2   V4AGJ6   A0A210PVY1   A0A2R6WVC2   A0A2R6WVC4   A0A3B5N002   A0A1S0UGB4   T1ETZ2   A0A315WBZ4   A0A3P9PXH0   A0A1I7VHQ1   A0A1A8QLR5   A0A2S2QKF9   J9LB75   A0A2R6WVC0   A0A238C477   A0A2R6WVC5   A0A0V1N1Y6   A0A0V1HY88   A0A1A8AJJ1   A0A1A7ZE46   A0A158R5J7   A0A1B6KRA6   A0A3B4BAL3   A0A3P8RTP1   A0A0K0MXG8   A0A0V0RZG1   A0A0V0RZK2   A0A0V0RZU3   A0A2J6SCK3   A0A3M6UXS0   J9EWB9   A0A3P7DED9   A0A1B6CPF5   A0A3P8RUS4   A0A0G2USR8   A7EN13   A0A1D9QID6   F6YKR1   A0A2B4SNF7  

PDB

5YK4     E-value=1.03451e-13,     Score=181

KEGG

101737305    K15001 cytochrome P450 family 4 [EC:1.14.-.-] | (RefSeq) cytochrome P450 4C1-like

GO

GO:0030983   GO:0006298   GO:0005524   GO:0070836   GO:0016021   GO:0046872   GO:0032300   GO:0008094   GO:0007131   GO:0004674   GO:0007165   GO:0005488   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

34.98273

Exp number, first 60 AAs:

19.16489

Total prob of N-in:

0.25401

POSSIBLE N-term signal

sequence

outside

1  -  163

 

 

Pi

294.330841

Theta

173.934276

Tajima's D

1.654043

CLR

0.510377

CSRT

0.823408829558522

Interpretation

Uncertain