SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02385
Pre Gene Modal
BGIBMGA013539
Annotation
PREDICTED:_hairy/enhancer-of-split_related_with_YRPW_motif_protein_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.563
 

Sequence

CDS
ATGGAATCTTATCATCACCATCGTCACATGGAGCAGAGTAACCTGCAAGGTCAAACTCAAAGTTCTCAGTGGGGCTATGGGACATGGGGTCCACCGGCCCCTGCGCCGGCGCCACCTCCTCCGACCTCACGCAGTAAGCGGGCACACTCTGAAAGCGAAGACGATGCTTTCTCCGAAGAAAGCAGTAAGGATGCGCAGTCACCCGGGGGAGACTCTTGTCAATTAATGACAAGAAAAAGGCGACGCGGCGTGATAGAGAAGAAACGCAGAGATCGAATCAACACGTCTCTTACCGAGCTGAAGAGGCTAGTGCCGGCCGCGTGCGAGAAGCAGGGCAGCGCCAAGCTAGAGAAGGCGGAGATCTTACAGCTGACCGTGGACCATCTCAAGATGTTGCACGCTAAAGGTCTGGACACATTTGCCTACGACCCTCAGCGATACGCGATGGACTACCACAGCATCGGCTTTCGAGAATGTGCAGCCGAGGTCGCGAGATACCTCGTTAGTTGTGAAGGCCTCGACATCCAGGATCCTCTGCGTCTTCGTCTCATGAGCCACCTCCAGTGCTTTGCCGCGCAACGTGAGCTGGCAGCCAAGTCCACGAACTGGGGCTACCCTCAATACCCCACACCTGTAGCTCCTCAACCCCAGCATCCGACCGGTTACACGGAGCTGGGACACAGACAAGACTTACCTATAACAACTGCTTCGACCACCGTGACCGCTCCAGCGATTGCTGCACCTTTGTCCGCAGCTCCAAGCTATCCACACTACCCTCCCGGACCTCCGGCACCACCAGCCCCACCCGGCCCTCATCCGGCGCCACCAGCCCCGCATTACCCTACTCCGTACCCTCATCCACCACCCCACCACCAGTATTCACAAAACAGTTCCAAGCCCTACAGACCGTGGGGCGCGGAGTTAGCTTATTAA
Protein
MESYHHHRHMEQSNLQGQTQSSQWGYGTWGPPAPAPAPPPPTSRSKRAHSESEDDAFSEESSKDAQSPGGDSCQLMTRKRRRGVIEKKRRDRINTSLTELKRLVPAACEKQGSAKLEKAEILQLTVDHLKMLHAKGLDTFAYDPQRYAMDYHSIGFRECAAEVARYLVSCEGLDIQDPLRLRLMSHLQCFAAQRELAAKSTNWGYPQYPTPVAPQPQHPTGYTELGHRQDLPITTASTTVTAPAIAAPLSAAPSYPHYPPGPPAPPAPPGPHPAPPAPHYPTPYPHPPPHHQYSQNSSKPYRPWGAELAY

Summary

Pfam
PF00010   HLH        + More
PF07527   Hairy_orange
Interpro
IPR003650   Orange_dom        + More
IPR011598   bHLH_dom       
IPR036638   HLH_DNA-bd_sf       
SUPFAM
SSF47459   SSF47459       
Gene 3D
PDB
2DB7     E-value=7.41731e-14,     Score=186

Ontologies

Topology

Subcellular location
Nucleus  
Length:
310
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0124
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05739
outside
1  -  310
 
 

Population Genetic Test Statistics

Pi
246.866295
Theta
166.996876
Tajima's D
1.571515
CLR
0.010335
CSRT
0.801909904504775
Interpretation
Uncertain
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