SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02374
Annotation
PREDICTED:_uncharacterized_protein_LOC106136402_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.033
 

Sequence

CDS
ATGGACGGAGAAGACAGTCGGCATCATTTGATGACACCCTCACGTAGCCATAAAGGGAGCAGAGGTGAAGCAGGTCCCAGCCGATCTCGCACTCGCAGCCGCAGCTCTCGCATGCACAGCCGGGCCCGGGAGCTGGAACTCGACCGGGAACGGGTCCAGCGACTCGAACGAGATCTGCAGCGGGAGCGGGAGGTTCTGCGGCAACACGAAAGAAATACGCGGTACTCTTCAACGGAGAGGCCGCGTGCGACTTCGCTTCGTGCAGTCAGCGAGGCGCCGCTTCGTGCAGTCAGCGAGGCGCGCCGGAAGGACGATGAGCGGCATGCAGACGTCAATCATCGACGTCGTGCAACACATATCAGGTCACGTAGTCCTTCCTTTTCTACTAATGATGTTGTCAAAATAATACAGTCTATTAAGCGAGGTCTCGAACCTGAACAGTTACCACAGAACACCTTAATGAATAATAAGAATTTAGACCACAAGAATATTGTTCCAAATTTTGATCCTTCTGTTAAAAACCAGCGAATAGATTTGTGGCTAAAGAAGGTTAATGAATGCGCTTCGGTTTATGGTTGGGACGATAAGACCACCATCCACTTTTCACTACAAAAACTTCAAGGATTGGCCAAGATGTGGTACGAGAGCTTAGATACCATCTTGTACACGTGGCAAGAGTGGCAAAATAAATTAATAAATGCATTTCCTCACGAACACAACTATGGTCAATGCTTGGAGGACATGTTAAGACGGAGAAGCAAATTTAATGAACCTATAGAGACTTACTATTATGAAAAACTCGCTCTGTTAAACCTATGTGATATCTCTGGTAAGCGCGCTGTCGATTGCATAATTCACGGGATCAGTGACAAGACTACGAAGTCTAGTGCTTTAGCTTTGCGCTGTTCTCTTCCAGAACAGCTTTTACAGTTTTTAATGAGCAATAGGGACACTGGTAACGATCAACAACGACCGCATTTAAAAATTAAAAACGCAGCTGATTATGGATCAAGTTATAAAAAGAATTCTGGTATTTATTGTTTTAACTGCAAACAACGGGGGCATCCATACCTACAATGTCCAAAACCGCTAGTTAAATGTAATAAATGTAGTAAGTTAGGACATAAAACAGAAACCTGTTTTAAAAATCAAGGGTTTTCCTCAACCGAACTCGGTGCGATCTCTAAAACATTATGCATTACTAGCTCAAGCTCTAATACAAAATTTACCAAGAAAGTATATATTAACGGTATGATCTTTGAGTCGTTCGTGGATTTTGGAAGCGAAATGACCCTTATTAAAGTATCTATAGCGCACAGATTAGGGAAAACTCATGACAACATACCAACTATCATGAAAGGCTTTGGTAATAAGTTGACACAGTCGCCCGGGAGCATACCTCTTCATCTCGAGATTGATGGCGTTCGCGCTAGAGTGATGTGTAGGTTGGTTGATGATCAGTTATTGGACAAGTCTTTGTTAATCGGTCAATCTTTTACTGATCAACCTCATATCATTGTTTATAAAGATTCAACTACTTTGAAGTTTTTAAGCGTAGATACTGAATTGCCCCAATCAGATTTATTTGAGGAAAATGATAAACCTCTTGAGGGAAAAATACGCATGATGAACGGAATACTTGGCTCGGCTCGTTACAATAAAGCTACTGTATATATGGATGATCTTTTAATATACGGAGAATCCACAAAACAATGTCTAGACCGGTTAGAAGATGTTATGAAGTTAATTGAAGATGCTAAGTTGACATTAAGCCTTGCAAAGTGTAGTTTCTTGCAGAACAAGATCGAATATTTGGGTTACGAGGTTAGTGCTGAAGGCGTTAAGCCAGATTCATTAACTGCACAAAATCTAAAAAGCGATGAGAAAGATTGGGATAAGAAATTAGGAATAATTCAATGGGGTCTAAATAATACTGTACAGAAGACTACCGGTAGGACACCAATGGAAGTCATGTTCGGTGTGAAAATGAATAGTGAAATTAATCCGGCCTTAAACGAAATTATAACAGTGCCTAGTGAGATTCCTGATCTTACTTCCATACGGAAAGAAGTTAAGGAAAGGATAGACGAACAACAAAAGAAACAAAAACATTATTACGATAGGAATAGGAAACCGGCTCGAAATTACAACAAAGGAGAACTGGTGAAAGTATTAAAGTCTTCTTTTAATAACAACGGCAAAAGCACAAAGCTGGTGCCCTACTACGAAGGCCCTTTCAAGATCGTTAAAGTGCTAGGTAATGATCGTTATAGGATATCACCAATCCCTGGATTTGAAGGGATGAAAAATAAGCGCAAAACTACTGTTGCATCTGATCGTATGCAACCATGGATACATATCGCGTCACTTGATCTTAACAACGGACTTGACACTGATTACGATGCAACCGACAGTGAATAA
Protein
MDGEDSRHHLMTPSRSHKGSRGEAGPSRSRTRSRSSRMHSRARELELDRERVQRLERDLQREREVLRQHERNTRYSSTERPRATSLRAVSEAPLRAVSEARRKDDERHADVNHRRRATHIRSRSPSFSTNDVVKIIQSIKRGLEPEQLPQNTLMNNKNLDHKNIVPNFDPSVKNQRIDLWLKKVNECASVYGWDDKTTIHFSLQKLQGLAKMWYESLDTILYTWQEWQNKLINAFPHEHNYGQCLEDMLRRRSKFNEPIETYYYEKLALLNLCDISGKRAVDCIIHGISDKTTKSSALALRCSLPEQLLQFLMSNRDTGNDQQRPHLKIKNAADYGSSYKKNSGIYCFNCKQRGHPYLQCPKPLVKCNKCSKLGHKTETCFKNQGFSSTELGAISKTLCITSSSSNTKFTKKVYINGMIFESFVDFGSEMTLIKVSIAHRLGKTHDNIPTIMKGFGNKLTQSPGSIPLHLEIDGVRARVMCRLVDDQLLDKSLLIGQSFTDQPHIIVYKDSTTLKFLSVDTELPQSDLFEENDKPLEGKIRMMNGILGSARYNKATVYMDDLLIYGESTKQCLDRLEDVMKLIEDAKLTLSLAKCSFLQNKIEYLGYEVSAEGVKPDSLTAQNLKSDEKDWDKKLGIIQWGLNNTVQKTTGRTPMEVMFGVKMNSEINPALNEIITVPSEIPDLTSIRKEVKERIDEQQKKQKHYYDRNRKPARNYNKGELVKVLKSSFNNNGKSTKLVPYYEGPFKIVKVLGNDRYRISPIPGFEGMKNKRKTTVASDRMQPWIHIASLDLNNGLDTDYDATDSE

Summary

Pfam
PF00098   zf-CCHC        + More
PF17919   RT_RNaseH_2
PF14392   zf-CCHC_4
PF17921   Integrase_H2C2
PF00078   RVT_1
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR012337   RNaseH-like_sf       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
SUPFAM
SSF50630   SSF50630        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
Gene 3D
PDB
4OL8     E-value=0.000231962,     Score=109

Ontologies

Topology

Length:
806
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00057
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00006
outside
1  -  806
 
 

Population Genetic Test Statistics

Pi
330.653075
Theta
212.673275
Tajima's D
2.157417
CLR
0.180983
CSRT
0.906604669766512
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号