Silkworm Genome Informatics Database

Gene

KWMTBOMO02373

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr5(+):540340-541841 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.9

CDS

ATGGAGCGAATAATTAATATACAACTCCTGAAGTATCTGGAGGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCGGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17 A0A3D5S1K1 A0A0P4VXU0 T2M4I6 A0A0P4VTV9 A0A0P4VVV8 + More
A0A1E1XGQ7 A0A147BNQ9 A0A0P4VPK5 A0A0P4VX79 A0A131Y4I8 A0A210QQ08 A0A2H9T2R7 A0A1G4M5I2 A0A2H9T3F5 A0A2H9T2V7

Pubmed

30148503 24065732 28503490 29652888 28812685 29150518 + More

EMBL

AY359886 AAQ57129.1 DPOC01000269 HCX22453.1 GDRN01105059 JAI57791.1 + More
HAAD01000593 CDG66825.1 GDRN01111334 JAI56796.1 GDRN01111277 JAI56804.1 GFAC01000919 JAT98269.1 GEGO01003312 JAR92092.1 GDRN01111278 JAI56803.1 GDRN01111326 JAI56798.1 GEFM01002394 JAP73402.1 NEDP02002425 OWF50811.1 NSIT01000538 PJE77518.1 FLMD02000280 SCV66640.1 NSIT01000412 PJE77717.1 NSIT01000532 PJE77527.1

Proteomes

UP000242188

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF56219 SSF56219 + More
SSF57667 SSF57667

Gene 3D

3.60.10.10

ProteinModelPortal

Q6UV17 A0A3D5S1K1 A0A0P4VXU0 T2M4I6 A0A0P4VTV9 A0A0P4VVV8 + More
A0A1E1XGQ7 A0A147BNQ9 A0A0P4VPK5 A0A0P4VX79 A0A131Y4I8 A0A210QQ08 A0A2H9T2R7 A0A1G4M5I2 A0A2H9T3F5 A0A2H9T2V7

PDB

6AR3 E-value=0.000116885, Score=109

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0016021 GO:0003676

PANTHER

PTHR45951:SF3

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04121

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00570

outside

1 - 438

Pi

13.22878

Theta

47.773809

Tajima's D

1.342781

CLR

0

CSRT

0.752062396880156

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree