Gene

KWMTBOMO02368

Annotation

PREDICTED:_uncharacterized_protein_LOC105387844_[Plutella_xylostella]

Location

Bomo_Chr5(+):441080-444525      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.324

CDS

ATGAGTCGCATTGCAGCGATAGAAGAGAACAGCACTGTGGAGGAATGGCGCTGGGTCCCCACGAAGGAAAATGTCGCCGACGACGCCACTAGAGAGCTACCCGTCGGCTTTGAAAGAAACCACCGCTGGTTCATAGGCCCGGAATACCTAAGACGGCATCCGGATGATTGGCCCGTACAACGGACTGCAAGAAGGGCAGAAGAGACGGGTGAAGAGAAGTGCGCAATGCTCGCCGTGAGCAGAGAGAGCCTCGGCGAAGCGATCCCGGACCCAAGACGCTTCTCCAAGTGGGAGAAGTACCTGCGTGCAACGGGGCGAATACTACAATTCGTCAGCCTATGCCGCAGGAGTCGCGAGCGCACTCATTACAAGAGGACCAGACGGAACCCGCGTTCGGACCCGACGTGGGAGAAGAATAGAAAGAAGACGACTTCGAAGACCCCGCTGAACACACCGCGGACGCCAGAGCAAGCAGTCATTCAATGGAAGACTTTAGACGCCGACACGCTTCGACGCGCCGAGACGCTCATTTGGCAACAGAGCCAGCGGGCGGCCTTCGAGGAAGAGATTTTGACGCTCCAGCGAGGGAAACAAATATCCCCAGCGAGCCGACTGCGAAACTTGTCCGTAACTTACGCGGACGGGATATTGAGAATAAACGGACGCATCGGCAACATAGAGGGAGCTGACGTCATCACCTCGCCTCTCGTGCTAGACGGATCCCGACGCGAAACGAGACTGATGATAGACTTCATTCATAGAAAGATGCACCACGCCGGAACCGAAGCTACGATCGCCGAGTGCCGACAGTCGTACTGGGTCTTACGCCTACGCCCAGTGACACGGAGCGTGATCCACAATTGTCTTCCGTGTCGTATCCGCAAGGACACACCACCGCGTCCAGCCACAGGCGACCACCCACCGAGCAGACTGGCACACCATCGGCGACCATTTACGTACGTGGGCCTCGATTACTTCGGACCCTATCATGTTACCACCGGCAGAAGCACCCAGAAGCACTACGTGGCCATCTTCACATGTCTCACTACGCGTGCGGTACACTTAGAACCGGCAGCGAGCCTCAGCACGGACTCAGCAGTGATGGCACTCCGGCGCATGATCGCGCGCCGGGGAGCCCCGACGGAGATATGGAGCGACAACGGCACCAATTTACGGGGTGCCGACAAGGAGCTGCGCCAAGCTATGGACAAGGCGACTGAGCATGAAGCGAGCTTAAGAATTATCCAATGGCGCTTCATCCCACCGGGCGCGCCTTTCATGGGCGGCGCCTGGGAAAGAATGGTGCGGGCGGTAAAGGCCGCGCTCTCGGCCACGGAACAGCCGAGGCACCCGACGCCCGAAATATTTCACACTCTGCTAGCGGAGGCAGAGTTCACAGTGAACAGCCGACCTCTCACCCACGTATCGGTGAGCGCCGACGATCCCGACCCTCTGACACCGAACCACTTCCTGCTGGGAGGCCCGGCGCGAGTCCCCGTGCCGGGCAAGCTTGACGACGCCGACCTCATAGGGCGCGCACACTGGCGCGCAGCTCAACGTCTGGCAGATGTGTTCTGGAGTCGCTGGCTCCGGGAGTACCTGCCCGACCTGCAGAACCGGCGGGAGCCCCACAGCCGCGGGCCCGCCCTGAAGATAGGCGACGTCGTGATAATAGCAGACGGAACGCTCCCACGGAACACCTGGCCACGAGGGATCATCCAGGAGGTTTACCCGGGGGCCGACGGCATCACTCGAGTGGTCGACGTGCGCACCGCCGGCGGTATCCTGCGACGCCCGGCAAAGAAGATCATCGTGCTGCCCACGATGTCCGCCGCTCACCAGGGAGGATGCAGCGACGTGAACGACGCTGCACGGCGGGAGGATGTTCGCGACGGACATAAAGAAACATAG

Protein

MSRIAAIEENSTVEEWRWVPTKENVADDATRELPVGFERNHRWFIGPEYLRRHPDDWPVQRTARRAEETGEEKCAMLAVSRESLGEAIPDPRRFSKWEKYLRATGRILQFVSLCRRSRERTHYKRTRRNPRSDPTWEKNRKKTTSKTPLNTPRTPEQAVIQWKTLDADTLRRAETLIWQQSQRAAFEEEILTLQRGKQISPASRLRNLSVTYADGILRINGRIGNIEGADVITSPLVLDGSRRETRLMIDFIHRKMHHAGTEATIAECRQSYWVLRLRPVTRSVIHNCLPCRIRKDTPPRPATGDHPPSRLAHHRRPFTYVGLDYFGPYHVTTGRSTQKHYVAIFTCLTTRAVHLEPAASLSTDSAVMALRRMIARRGAPTEIWSDNGTNLRGADKELRQAMDKATEHEASLRIIQWRFIPPGAPFMGGAWERMVRAVKAALSATEQPRHPTPEIFHTLLAEAEFTVNSRPLTHVSVSADDPDPLTPNHFLLGGPARVPVPGKLDDADLIGRAHWRAAQRLADVFWSRWLREYLPDLQNRREPHSRGPALKIGDVVIIADGTLPRNTWPRGIIQEVYPGADGITRVVDVRTAGGILRRPAKKIIVLPTMSAAHQGGCSDVNDAARREDVRDGHKET

Uniprot

Q9NDN0   Q9NDM9   A0A0N1IGH3   Q2MGA5   A0A2A4IRQ3   A0A2H1VMV3   + More
A0A226E2P7   K7JA41   A0A146KYV8   A0A226DGY5   A0A226EEI4   A0A034V9M7   A0A182GD64   A0A226DH22   A0A182HDR0   A0A182G4R3   A0A226D351   A0A1Y1LN76   A0A182GKP7   A0A1B0D7Y5   W8AJC8   A0A226DM06   A0A226EKF8   A0A182G7Z0   A0A182HAG0   A0A2M4CKI9   A0A182G1E0   A0A182HER3   A0A2M4CKZ0   A0A085NQS3   A0A182GED3   A0A085NF60   A0A182GRX9   A0A1B0D864   A0A182HCB4   A0A182GY66   A0A1B0CTR4   A0A0K3CPX7   A0A085MSJ2   A0A2M4B8V2   A0A182HAK2   A0A226EFV7   A0A2M4B8T6   A0A182G158   A0A0P6C5E3   A0A0P6AZF3   A0A182G5I1   A0A085LRU1   A0A1W7R6F2   A0A182RSB1   A0A182YLX0   A0A182H5B8   A0A182PWK8   A0A146T9I5   W4Y2R6   A0A085MU62   W4XIU6   A0A182GPV7   A0A182GL35   A0A226EDU9   W4XIU5   A0A336MFC4   W4Z131   A0A182G9X5   W4XIU3   A0A0S7L6P4   A0A0N8BUP4   W4YKE1   A0A182VT46   W4XIU4   A0A2H9T496   A0A1B0DJC4   A0A0N5E779   A0A146SEB9   A0A1S3I2B0   A0A0P6IXJ2   A0A182XPX3   W4ZKP7   W4ZGF6   A0A0S7GQ49   A0A146TDC0   A0A2G8LGK0   A0A182X1M1   A0A0N5E596   A0A1S3IV31   A0A182H1N7   A0A0P6IQY0  

Pubmed

11361350    26354079    20075255    26823975    25348373    26483478    + More
28004739    24495485    24929829    23552491    25244985    29150518    29023486   

EMBL

AB042118    BAA95569.1    AB042119    BAA95570.1    KQ459986    KPJ18861.1    + More
AF530470    AAQ09229.1    NWSH01008670    PCG62455.1    ODYU01003174    SOQ41584.1    LNIX01000007    OXA52015.1    AAZX01023278    GDHC01018323    JAQ00306.1    LNIX01000019    OXA44812.1    LNIX01000004    OXA55241.1    GAKP01020709    JAC38243.1    JXUM01009840    KQ560293    KXJ83223.1    OXA44855.1    JXUM01130316    KQ567562    KXJ69370.1    JXUM01144298    KQ569759    KXJ68523.1    LNIX01000039    OXA39294.1    GEZM01052586    JAV74401.1    JXUM01013377    KQ560375    KXJ82728.1    AJVK01033431    GAMC01017930    JAB88625.1    LNIX01000015    OXA46575.1    LNIX01000003    OXA57597.1    JXUM01151198    KQ571164    KXJ68235.1    JXUM01031097    KQ560909    KXJ80382.1    GGFL01001682    MBW65860.1    JXUM01038372    KQ561162    KXJ79503.1    JXUM01005801    KQ560202    KXJ83866.1    GGFL01001842    MBW66020.1    KL367480    KFD71819.1    JXUM01162450    KQ574455    KXJ67869.1    KL367508    KFD68106.1    JXUM01083542    KQ563383    KXJ73941.1    AJVK01037041    JXUM01127084    KQ567147    KXJ69602.1    JXUM01020939    KQ560586    KXJ81781.1    AJWK01027898    LN877231    CTR11689.1    KL367687    KFD60188.1    GGFJ01000333    MBW49474.1    JXUM01122819    KQ566647    KXJ69950.1    OXA56250.1    GGFJ01000306    MBW49447.1    JXUM01136032    KQ568367    KXJ69026.1    GDIP01004568    JAM99147.1    GDIP01036233    JAM67482.1    JXUM01146045    JXUM01146046    KL363318    KFD47687.1    GEHC01000913    JAV46732.1    JXUM01111221    KQ565482    KXJ70922.1    GCES01096813    JAQ89509.1    AAGJ04043389    KL367650    KFD60758.1    AAGJ04001285    JXUM01016534    JXUM01056823    KQ561926    KQ560461    KXJ77135.1    KXJ82302.1    JXUM01013493    KQ560378    KXJ82704.1    OXA55408.1    UFQS01001138    UFQT01001138    SSX09193.1    SSX29102.1    AAGJ04040339    JXUM01049933    KQ561627    KXJ77955.1    GBYX01183181    JAO85198.1    GDIQ01143107    JAL08619.1    AAGJ04118726    AAGJ04091218    NSIT01000285    PJE78034.1    AJVK01034928    GCES01107353    JAQ78969.1    GDIQ01002920    JAN91817.1    AAGJ04095911    AAGJ04058558    GBYX01453073    JAO28442.1    GCES01095427    JAQ90895.1    MRZV01000084    PIK59375.1    JXUM01103818    KQ564835    KXJ71674.1    GDIQ01002921    JAN91816.1   

Proteomes

UP000053240    UP000218220    UP000198287    UP000002358    UP000069940    UP000249989    + More
UP000092462    UP000092461    UP000075900    UP000076408    UP000075885    UP000007110    UP000075920    UP000046395    UP000085678    UP000076407    UP000230750   

PRIDE

Q9NDN0    Q9NDM9   

Pfam

PF17921   Integrase_H2C2        + More
PF18701   DUF5641
PF05380   Peptidase_A17
PF05585   DUF1758
PF00665   rve
PF03564   DUF1759
PF01565   FAD_binding_4
PF09129   Chol_subst-bind
PF00078   RVT_1
PF00628   PHD
PF06677   Auto_anti-p27

Interpro

IPR040676   DUF5641        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       
IPR008737   Peptidase_asp_put       
IPR001995   Peptidase_A2_cat       
IPR005312   DUF1759       
IPR001878   Znf_CCHC       
IPR006094   Oxid_FAD_bind_N       
IPR016166   FAD-bd_PCMH       
IPR016164   FAD-linked_Oxase-like_C       
IPR016170   Cytok_DH_C_sf       
IPR015213   Cholesterol_OX_subst-bd       
IPR036318   FAD-bd_PCMH-like_sf       
IPR016169   FAD-bd_PCMH_sub2       
IPR016167   FAD-bd_PCMH_sub1       
IPR000477   RT_dom       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR002999   Tudor       
IPR019786   Zinc_finger_PHD-type_CS       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001841   Znf_RING       
IPR009563   SSSCA1       

SUPFAM

SSF53098   SSF53098        + More
SSF56176   SSF56176       
SSF55103   SSF55103       
SSF57903   SSF57903       

Gene 3D

3.30.420.10     3.30.43.10     3.30.465.10     3.40.462.10     3.30.40.10     2.40.70.10    

ProteinModelPortal

Q9NDN0   Q9NDM9   A0A0N1IGH3   Q2MGA5   A0A2A4IRQ3   A0A2H1VMV3   + More
A0A226E2P7   K7JA41   A0A146KYV8   A0A226DGY5   A0A226EEI4   A0A034V9M7   A0A182GD64   A0A226DH22   A0A182HDR0   A0A182G4R3   A0A226D351   A0A1Y1LN76   A0A182GKP7   A0A1B0D7Y5   W8AJC8   A0A226DM06   A0A226EKF8   A0A182G7Z0   A0A182HAG0   A0A2M4CKI9   A0A182G1E0   A0A182HER3   A0A2M4CKZ0   A0A085NQS3   A0A182GED3   A0A085NF60   A0A182GRX9   A0A1B0D864   A0A182HCB4   A0A182GY66   A0A1B0CTR4   A0A0K3CPX7   A0A085MSJ2   A0A2M4B8V2   A0A182HAK2   A0A226EFV7   A0A2M4B8T6   A0A182G158   A0A0P6C5E3   A0A0P6AZF3   A0A182G5I1   A0A085LRU1   A0A1W7R6F2   A0A182RSB1   A0A182YLX0   A0A182H5B8   A0A182PWK8   A0A146T9I5   W4Y2R6   A0A085MU62   W4XIU6   A0A182GPV7   A0A182GL35   A0A226EDU9   W4XIU5   A0A336MFC4   W4Z131   A0A182G9X5   W4XIU3   A0A0S7L6P4   A0A0N8BUP4   W4YKE1   A0A182VT46   W4XIU4   A0A2H9T496   A0A1B0DJC4   A0A0N5E779   A0A146SEB9   A0A1S3I2B0   A0A0P6IXJ2   A0A182XPX3   W4ZKP7   W4ZGF6   A0A0S7GQ49   A0A146TDC0   A0A2G8LGK0   A0A182X1M1   A0A0N5E596   A0A1S3IV31   A0A182H1N7   A0A0P6IQY0  

KEGG

101740186    K16672 homeobox protein homothorax | (RefSeq) homeobox protein homothorax

GO

GO:0003676   GO:0015074   GO:0004190   GO:0008270   GO:0071949   GO:0016491   GO:0046872   GO:0050660   GO:0003995   GO:0005515   GO:0005488   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

Length:

636

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00261

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00074

outside

1  -  636

 

 

Pi

158.006373

Theta

159.514512

Tajima's D

1.640979

CLR

178.763076

CSRT

0.815659217039148

Interpretation

Uncertain