Silkworm Genome Informatics Database

Gene

KWMTBOMO02365

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr5(+):316720-319838 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.651

CDS

ATGGAGGCGAAGTCGGAGCACGTCGCTAGAGTTGGCGAGCGATTGAAGAGCTATCCCTCCGGGAGCCGTGCTTTTTGGTCGCTCGCCAAAGCTGCAGAAGGAAACTTCTGCAGGTCTAGTCTCCGACCACTGCGCAAGTCCGATGACAATCTGGCCCACAGCGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCCCCGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTACAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATTATAAATACACAACTCCTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTTAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCATTTCTATCGAAGTTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTAATACCATGACCATTAACGGTGGCGTTCCACAAGGTTCGGTGCTCTCTCTCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCAGATGATAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGCCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACCAAGTTCAATTCAACCCGATAAAAACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGGGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCATGGGGTACTGCTCCCATCTTTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTAGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCAGCATCTCATTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTATGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MEAKSEHVARVGERLKSYPSGSRAFWSLAKAAEGNFCRSSLRPLRKSDDNLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRAFLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSNTMTINGGVPQGSVLSLTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVPEVENSLGRVSEWGELNQVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRGKRYFTPGQRLLLYKAQVRPRMGYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASHFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17 A0A3D5S1K1 A0A0P4VX79 A0A0P4VVV8 A0A0P4VTV9 T2M4I6 + More

Pubmed

30148503 24065732

EMBL

AY359886 AAQ57129.1 DPOC01000269 HCX22453.1 GDRN01111326 JAI56798.1 + More
GDRN01111277 JAI56804.1 GDRN01111334 JAI56796.1 HAAD01000593 CDG66825.1

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00096   zf-C2H2
PF02460   Patched

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD

SUPFAM

SSF56219 SSF56219 + More
SSF57667 SSF57667

Gene 3D

3.60.10.10

ProteinModelPortal

Q6UV17 A0A3D5S1K1 A0A0P4VX79 A0A0P4VVV8 A0A0P4VTV9 T2M4I6 + More

PDB

6AR3 E-value=0.000676773, Score=103

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964 GO:0004519 GO:0003676 GO:0016021

PANTHER

PTHR45951:SF3

Length:

559

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.28468

Exp number, first 60 AAs:

0.00012

Total prob of N-in:

0.01586

outside

1 - 559

Pi

35.261444

Theta

2.803424

Tajima's D

0.188624

CLR

1.137005

CSRT

0.461476926153692

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree