Gene

KWMTBOMO02362  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014207

Annotation

cytochrome_b5_[Bombyx_mori]

Location

Bomo_Chr5(-):177006-177679      View in EpiBrowser

Full name

Cytochrome b5      

Location in the cell

Cytoplasmic   Reliability : 2.363

CDS

ATGTCGGTCCACAAGTACACAAGAGCCGAAGTCGCGGCTCGCGACAACAACAAGCAGAACCTTATCATCATTGACAACGTGGTGTACGACGTCGCCGCTTTCCTAGAGGACCACCCGGGCGGCACCGAAGTCCTCGTCGACAACGCGGGCTCCGACGCCTCGGAGTGTTTCCACGAGGTCGGCCACAGTGAAATCGCCATTGAGTGGCGCAACACATTCAAGGTTGGCGAAATCGTAGACGAAGAGAAGTTAGAAGTGAAATGTAAGCAGCCGAGCGCCGCGGAGAGCGCGGAGCCGCTGACGCTGGGCGGGCTGCTGGCGGTGTACGGGCCGCCGGTCGCCATGGCTGTCCTCGCGTACCTGCTCTACACGTTCCTGTTCGGCTAG

Protein

MSVHKYTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEIAIEWRNTFKVGEIVDEEKLEVKCKQPSAAESAEPLTLGGLLAVYGPPVAMAVLAYLLYTFLFG

Description

Cytochrome b5 is a membrane-bound hemoprotein which functions as an electron carrier for several membrane-bound oxygenases.

Similarity

Belongs to the cytochrome b5 family.

Keywords

3D-structure   Complete proteome   Electron transport   Endoplasmic reticulum   Heme   Iron   Membrane   Metal-binding   Microsome   Transmembrane   Transmembrane helix   Transport   Alternative splicing   Reference proteome  

Feature

chain  Cytochrome b5
splice variant  In isoform A.

Uniprot

Q1HQ61   A0A2W1BGK2   A0A2A4JJE5   A0A2H1WG38   A0A0N0PDB3   A0A194Q5S9   + More
A0A212FAP8   A0A0B4N527   A0A0L7K413   A0A3G1T1H8   A0A2A4JL07   O76336   A0A1I8Q4S4   E7E2N6   A0A0K8TJR3   A0A0R8YF94   T1PG52   P49096   E9P245   Q9V4N3   A8VEL0   S4PD20   B4KSK1   Q28YJ0   B4H8J7   B3N9X4   B4P1R4   A0A0M4EGS4   B4HR33   B4QEC2   A0A1W4V0B7   A0A1L8EES6   B3MHB5   A0A2S2NIQ7   B4J6Y8   A0A3B0JQS7   A0A1W4W366   B4MIM9   B4LMG8   A0A1L8E0L3   A0A1L8E0R6   A0A0B2VHV0   A0A0L0CBD8   A0A0N0PCX4   K7J3G4   A0A3P7IC41   A0A183UZ77   A0A1Y1NGY9   A0A194Q492   A0A182NK60   Q2F5S4   A0A1D1YYA3   A0A1S4FP08   B0XBR0   A0A182H1F9   T1D375   A0A182S5V3   A0A182QWS5   H9JXE2   A0A0C9R7X4   A0A182YEK9   U5ETY5   A0A182JND2   A0A2H8TX90   A0A0K8TSV5   A0A1A9VJ04   A0A1Q3FJ31   A0A0M3ILW1   R4UNH6   A0A2R7VZP6   A0A267FNU7   A0A182P0N2   A0A182RP59   A0A0A1WSM2   A0A2M4C3D7   A0A0K8W0V0   A0A2M4A4X1   A0A1B0GBU5   A0A1A9Z7K7   T1DS14   A0A1A9X8P6   A0A1B0BYD8   A0A267FB22   A0A084WK70   A0A026W1U1   A0A034WH44   Q1ZZP7   W5JIU3   A0A1I7S690   A0A2S2R2S6   A0A182J4N3   A8QIU3   A0A182FC84   A0A182KQD2   A0A182VIG2   A0A182TII4   A0A182WWY8   Q86QH4  

Pubmed

19121390    28756777    26354079    22118469    25550052    26227816    + More
10196737    22689565    21279680    10731132    12537572    12537569    23622113    17994087    15632085    17550304    22936249    26108605    20075255    28004739    26483478    24330624    25244985    26369729    25830018    24438588    24508170    30249741    25348373    20920257    23761445    21909270    20966253    12364791    14585502    14747013    17210077   

EMBL

BABH01041567    DQ443191    ABF51280.1    KZ150107    PZC73391.1    NWSH01001215    + More
PCG72091.1    ODYU01008432    SOQ52033.1    KQ460401    KPJ14959.1    KQ459465    KPJ00360.1    AGBW02009439    OWR50814.1    KJ767014    AIJ00848.1    JTDY01011131    KOB57491.1    MG992403    AXY94841.1    PCG72092.1    PCG72093.1    AF061105    AAC33731.1    HQ609844    ADU02195.1    PZC73390.1    GBRD01000072    JAG65749.1    KP083295    ALA55992.1    KA646863    AFP61492.1    L38464    HQ864711    JN374926    JN374927    JN374928    JN374929    JN374930    JN374931    JN374932    JN374933    JN374934    JN374935    JN374936    JN374937    JN374938    JN374939    JN374940    JN374941    JN374942    JN374943    JN374944    JN374945    JN374946    JN374947    JN374948    KX532130    ADW95864.1    AEO12023.1    AEO12024.1    AEO12025.1    AEO12026.1    AEO12027.1    AEO12028.1    AEO12029.1    AEO12030.1    AEO12031.1    AEO12032.1    AEO12033.1    AEO12034.1    AEO12035.1    AEO12036.1    AEO12037.1    AEO12038.1    AEO12039.1    AEO12040.1    AEO12041.1    AEO12042.1    AEO12043.1    AEO12044.1    AEO12045.1    ANY27940.1    AE013599    BT001378    BT004852    BT015196    EU166920    ABW37749.1    GAIX01005152    JAA87408.1    CH933808    EDW09506.1    CM000071    EAL25975.2    CH479223    EDW35032.1    CH954177    EDV59670.1    CM000157    EDW89200.1    CP012524    ALC41660.1    CH480816    EDW46776.1    CM000362    CM002911    EDX06031.1    KMY92013.1    GFDG01001572    JAV17227.1    CH902619    EDV36892.1    GGMR01004438    MBY17057.1    CH916367    EDW02069.1    OUUW01000001    SPP75716.1    CH963719    EDW71968.1    CH940648    EDW62063.1    GFDF01001814    JAV12270.1    GFDF01001815    JAV12269.1    JPKZ01001707    KHN80580.1    JRES01000655    KNC29547.1    KPJ14961.1    UYWY01021902    VDM45118.1    GEZM01007769    JAV94947.1    KPJ00362.1    DQ311349    ABD36293.1    GDJX01008367    JAT59569.1    AB332028    DS232648    BAI77920.1    EDS44409.1    JXUM01103328    JXUM01103329    JXUM01103330    JXUM01103331    JXUM01103332    KQ564796    KXJ71737.1    GALA01001363    JAA93489.1    AXCN02000429    BABH01041568    GBYB01002871    JAG72638.1    GANO01002571    JAB57300.1    GFXV01006606    MBW18411.1    GDAI01000161    JAI17442.1    GFDL01007425    JAV27620.1    KC740896    AGM32720.1    KK854198    PTY12966.1    NIVC01000916    NIVC01000337    PAA74884.1    PAA85284.1    GBXI01012213    JAD02079.1    GGFJ01010695    MBW59836.1    GDHF01007542    JAI44772.1    GGFK01002484    MBW35805.1    CCAG010005890    GAMD01000400    JAB01191.1    JXJN01022588    NIVC01001238    PAA70434.1    ATLV01024097    KE525349    KFB50614.1    KK107487    QOIP01000006    EZA50032.1    RLU21665.1    GAKP01004056    JAC54896.1    ABLF02011610    DQ416029    ABD76376.1    ADMH02001376    ETN62714.1    GGMS01015144    MBY84347.1    EF035450    ABM01874.1    AY183376    AAAB01008807    AAO24766.1    EAA04154.2   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000095300    UP000095301    UP000000803    UP000009192    UP000001819    UP000008744    UP000008711    UP000002282    UP000092553    UP000001292    UP000000304    UP000192221    UP000007801    UP000001070    UP000268350    UP000192223    UP000007798    UP000008792    UP000031036    UP000037069    UP000002358    UP000267007    UP000050794    UP000075884    UP000002320    UP000069940    UP000249989    UP000075901    UP000075886    UP000076408    UP000075881    UP000078200    UP000036681    UP000215902    UP000075885    UP000075900    UP000092444    UP000092445    UP000092443    UP000092460    UP000030765    UP000053097    UP000279307    UP000007819    UP000000673    UP000095284    UP000075880    UP000069272    UP000075882    UP000075903    UP000075902    UP000076407    UP000007062   

PRIDE

Q1HQ61    E9P245    Q9V4N3    A8VEL0    Q2F5S4    H9JXE2    + More

Pfam

PF00173   Cyt-b5

Interpro

IPR018506   Cyt_B5_heme-BS        + More
IPR036400   Cyt_B5-like_heme/steroid_sf       
IPR001199   Cyt_B5-like_heme/steroid-bd       

SUPFAM

SSF55856   SSF55856       

Gene 3D

3.10.120.10    

ProteinModelPortal

Q1HQ61   A0A2W1BGK2   A0A2A4JJE5   A0A2H1WG38   A0A0N0PDB3   A0A194Q5S9   + More
A0A212FAP8   A0A0B4N527   A0A0L7K413   A0A3G1T1H8   A0A2A4JL07   O76336   A0A1I8Q4S4   E7E2N6   A0A0K8TJR3   A0A0R8YF94   T1PG52   P49096   E9P245   Q9V4N3   A8VEL0   S4PD20   B4KSK1   Q28YJ0   B4H8J7   B3N9X4   B4P1R4   A0A0M4EGS4   B4HR33   B4QEC2   A0A1W4V0B7   A0A1L8EES6   B3MHB5   A0A2S2NIQ7   B4J6Y8   A0A3B0JQS7   A0A1W4W366   B4MIM9   B4LMG8   A0A1L8E0L3   A0A1L8E0R6   A0A0B2VHV0   A0A0L0CBD8   A0A0N0PCX4   K7J3G4   A0A3P7IC41   A0A183UZ77   A0A1Y1NGY9   A0A194Q492   A0A182NK60   Q2F5S4   A0A1D1YYA3   A0A1S4FP08   B0XBR0   A0A182H1F9   T1D375   A0A182S5V3   A0A182QWS5   H9JXE2   A0A0C9R7X4   A0A182YEK9   U5ETY5   A0A182JND2   A0A2H8TX90   A0A0K8TSV5   A0A1A9VJ04   A0A1Q3FJ31   A0A0M3ILW1   R4UNH6   A0A2R7VZP6   A0A267FNU7   A0A182P0N2   A0A182RP59   A0A0A1WSM2   A0A2M4C3D7   A0A0K8W0V0   A0A2M4A4X1   A0A1B0GBU5   A0A1A9Z7K7   T1DS14   A0A1A9X8P6   A0A1B0BYD8   A0A267FB22   A0A084WK70   A0A026W1U1   A0A034WH44   Q1ZZP7   W5JIU3   A0A1I7S690   A0A2S2R2S6   A0A182J4N3   A8QIU3   A0A182FC84   A0A182KQD2   A0A182VIG2   A0A182TII4   A0A182WWY8   Q86QH4  

PDB

2IBJ     E-value=1.63422e-17,     Score=212

KEGG

100134922    K23490 cytochrome b5 | (RefSeq) cytochrome b5

GO

GO:0046872   GO:0020037   GO:0016021   GO:0005789   GO:0055114   GO:0045610   GO:0035206   GO:0012505   GO:0008270   GO:0050660   GO:0003995   GO:0005515   GO:0005488   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

Subcellular location

Endoplasmic reticulum membrane  
Microsome membrane  

Length:

128

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.72323

Exp number, first 60 AAs:

0.13341

Total prob of N-in:

0.75829

inside

1  -  104

TMhelix

105  -  127

outside

128  -  128

 

 

Pi

173.630698

Theta

167.669735

Tajima's D

0.26965

CLR

0

CSRT

0.445277736113194

Interpretation

Uncertain