Silkworm Genome Informatics Database

Gene

KWMTBOMO02360

Annotation

Uncharacterized_protein_OBRU01_12245_[Operophtera_brumata]

Location

Bomo_Chr5(-):166454-171039 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 2.904

CDS

ATGGCATTGCCACTCCATCGCATAGTTACCGACAGTGTAAGGTTTCACGTATTTCCCAGCCTAGAGAGTAAACCTGAACGTTTTAAGGCATGGGTTCAAGCAATTGGAGGTAAACTGGATACCCCAGAGGACTATGAATACTACAGAAACCAACGCATATGTGATCGGCATTTTGCAAAAGAAAATAAAAACCGATACAATCGTGTGGACGCTTTGGGAGTTCCATCGCTTCATTTAATCGAAACTGATCTGGGAGAAAGAGAAAAAAATTCTTTAGGAGTAAGCTTTGCCTCCTCAGTACAAGAGACATTGAATTTGGATGTTATTGAACCTACAACTTCCAATGTCCTAGTTGAAGATATGATGACACGGAACAATCGTTTATCCTTGCGAAAATATAATATGTACCAAAGTCAAATCAAACAATTAAGGAAAAGAGTGAACACTTTTCAAAAAAGAGAAGATAACTTCAGGACAAGATTAGCAAATGCTGAAAAGATTACTGATGAATCTGCATTTAAAAGGATTGCCAAAAATATGACTCTGCCTGCAAAGATTTTTACGAATATGCAGTTTCGCACTACGTCAAAAAAACCGTCGGGCAGGAGATTTCTATTAGAAGAAAAAGTGCTATCATTAACACTCTACAAAAGAAGTCCCAAATGTTATTCAATGTTGTCCAGTTTAGTTGGAGATACTAAGGCAGACTATTTAAGACAGAATAAAGAATGGAGACAAGATTTCTTTGAAATTAATAAGAAAATAATTATACCTCTTTATGATGTTCCACATCTCATCAAGGGATTACGCAATAATCTCCTCACCAAAGATATGTATTATAAAGACGATGAAGATAAAGGCAAAATCAAAAAAGTGAAGTGGGAATATTTCCAATTGCTGTATGAGGCTGACAAATCATATGGAGAGTTAAGATGCCTTCAGAAATTAACAGAGGAGCATGTTAATCCTGATAAAATTAAGAAGATGCGAGTGAAGGCAGCAACGCAACTGTTCAGTCACAGTGTGGCTGTAGCCACTGAGCATTTAACAGCCAGAGGGAATTTGCCACAGGAGTGCAGGGATATAATTCCAATTGTATTAATAATTGACAAATTATTTGACAGTTTAAATGGTAACACTTTTCATGTACCCAACGGAAAACTACATAAAGGGCCTGTTAAAAGGATGCTGGGCAAAGGACATACGTGTGTGGCTGGGTTCTTACCAAATGTTTGA

Protein

MALPLHRIVTDSVRFHVFPSLESKPERFKAWVQAIGGKLDTPEDYEYYRNQRICDRHFAKENKNRYNRVDALGVPSLHLIETDLGEREKNSLGVSFASSVQETLNLDVIEPTTSNVLVEDMMTRNNRLSLRKYNMYQSQIKQLRKRVNTFQKREDNFRTRLANAEKITDESAFKRIAKNMTLPAKIFTNMQFRTTSKKPSGRRFLLEEKVLSLTLYKRSPKCYSMLSSLVGDTKADYLRQNKEWRQDFFEINKKIIIPLYDVPHLIKGLRNNLLTKDMYYKDDEDKGKIKKVKWEYFQLLYEADKSYGELRCLQKLTEEHVNPDKIKKMRVKAATQLFSHSVAVATEHLTARGNLPQECRDIIPIVLIIDKLFDSLNGNTFHVPNGKLHKGPVKRMLGKGHTCVAGFLPNV

Uniprot

A0A0L7LB47 A0A151JMM6

Pubmed

26227816

EMBL

JTDY01001960 KOB72446.1 KQ978901 KYN27584.1

Proteomes

UP000037510 UP000078492

Pfam

PF12017 Tnp_P_element + More
PF05485 THAP

Interpro

IPR021896   Transposase_37        + More
IPR038441   THAP_Znf_sf
IPR006612   THAP_Znf

Gene 3D

3.30.40.180

ProteinModelPortal

A0A0L7LB47 A0A151JMM6

KEGG

NA

GO

GO:0006313 GO:0004803 GO:0003677 GO:0003676 GO:0008270 GO:0050660 GO:0003995 GO:0005515 GO:0005488 GO:0006289 GO:0004518 GO:0006281 GO:0048384

Length:

411

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000830000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00305

outside

1 - 411

Pi

130.726852

Theta

178.266791

Tajima's D

-1.170538

CLR

1.025573

CSRT

0.106294685265737

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree