SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02359
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.44 Nuclear   Reliability : 1.035
 

Sequence

CDS
ATGGCCCGGCTCCGCGAGATCTTGCCTGATCCGGAGGTGGTGAGGATCGACAGGCCTGTCAGAATGGCGGAGATCAAGGTGACGGGCCTGGACGAGTGCGCCACGAAAGAGGAGGTGGCTGCCGCTATCGCATTGCAGGGGAACTGTGCTCTTGCAAACGTCAAGGTGGGGGAGCTTCGGAGTACATATTCCGGAACTCGCTCTGTATGGGCGCGGTGCCCCGTACAGACAGCCACCCTACTGGCTACGCCTGCACAGGGAAAGCCCGCTGACACGCCCGGTAGGCTACGCGTGGGGTGGGTTATTGCCCACGTGCAGTTGCAGGAAGCTCGACCATGGCGATGCCTTCGATGTTTCGGCACCGGGCACGGCCTCGCCAAGTGCTCGTCAGCTGTTGACCGCAGCGGACTATGTTTCCGGTGCGGCCAATCTGGGCACAAGGCCGCTTCCTGCACTGCCGCCATGCCACACTGTGTATTGTGCGACGCGGAGAAGCGGCGGGCCAACCACCGGGCGAATTTGAACCACTCCGCCAGGGCGCAGGATCTCCTCGTCCACACCATGGTGGAGTGGTCAATCGATGTTGCCATAGCCGCGGAGCCGTACTTCGTCCCTGCGGACCAGGATGCCTGGATCGGGGACGTCGACGGCTCCGTGGCTATTACTATCAGGCAGGCCGCGGCGTTACCCCCCCTGGTGATGGTGGCCAGGGGATCCGGTTATGTCGCGGCCAGGGTCGACGAAACCGTCGTGATCGGGGTATACTTCTCTCCGAATAGACATCTCGCCGAGTTCGAGCAGTTCCTGGGCGGGCTTGAGGTGTTGGTTCACCGCCTCGGGTCCCGCCCGGTTATCTTAGCGGGAGACCTCAACGCAAAATGGGTGACTTGGGGTTCCCCCCGCTCGGACTCACGCGGCAGGATGCTCTCGGAGTGGGCGATCGCGGCTGGTCTCTGTCTTTTGAACAGAGGTTCGGTCGCGACTTGCGTGCGATGGAACGGCGAATCTCACGTGGACGTGACATTCGCATCTCCGTCCATCGCACGCCGCACACGTGGCTGGCGCGTTCTTGAGGGGGCGGAGACGCTCTCGGACCATCGATACGTCCGATTTGAGCTCTCAGCCTCCTCTCGATCCGCGTCGGCTATGAACGCCCGCGGTGAGGAGGAGCTCCCGCGAAGTGCTCCTCGGTCATTCCCCAGGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGGTGGAGGCAGCCACGGTGGCTGCGTGGGCACCCGTGCCTACTAGCCCCGTGGACGTGGAGTCAGAGGCTGACTGGTTCCGGGGAACGATGGGTCGTATTTGTGACTCAGCGATGCCCCGGGTAGGCAGCAGTGCTCCGCGTGGCGGTGCGTACTGGTGGTCGCCCGAAATCGCGCAACTCCGCGAGGAGTGCGTGCGGGCGCGCCGCCGGAGCGCTCGCCATCGCCGCCGCCGCCTTCGCGATGAGGACTTCGCGGAGGTAGCGGACCGGTTGCGCGCCGACTGCCGCCAAAAGCAGGAAGCGTTGCGACTGGCCATCGGTGAGGCCAAATCTCAGGGCATGCAGACTCTCTTGGAGATGCTCGATCAGGATCCCTGGGGGCGCCCGTACCAAACGGTCCGCAAGAAATTGCGGCCGTGGGCGCTCCCAGTGACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGAGATTGTCTCCGGGCTGTTCCCGCAGATGGAGAGGGACTTTGAGCCTCCCTCCATGGGCGCGCCGCCTCGCAGTGACGTGAGCGGTGTTGCTGAGGTGGTCCCTCCGAGCATTTTGGAGGAAGAGATTCATGCGGCCGTGTTGAGGATGCGGAGAAAAGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGGATTTGGCCTTCGGTGCCCTTGGGGACCGGCTCGTGCGGCTCTTTGAAGCCTGCTTCGAGTCGGGACGGTTTCCTAAGCAGTGGAAGACGGGCAGACTCGTCCTTCTGAGGAAGGAGGGGCGCCCCGCAGACTCACCTGCGGGGTACCGCCCCATCGTGTTGCTGGACGAGGCGGGAAAATTGTTGGAGCGAGTTATCGCCGCCCGCATCGTCCGGCACCTGACCGGGACGGGTCCCGATCTGTCGGAGGAACAGTATGGCTTCAGAGAGGGCCGCTCTACTATCGACGCGATTATGCGCGTGCGTGCCCTCTCTGACGAAGCTGTCGCCCGCGGTGGGGTGGCCTTGGCGGTGTCCCTGGATATCGCCAACGCTTTTAACACCTTGCCCTGGTCAGTGATCGCGGGGGCGCTCGAATATCATGGCGTCCCCGCGTACCTCCGCCGACTGATCGGGTCCTATCTCGAGGACAGATCGGTCGTGTGCACCGGACACGGTGGTGCGGTGCTCCGCTTTCCGGTCGAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCCTGTGGAATATCGGTTACGACTGGGCTCTGAGGAGCGCCCTGCACGGCCCTCTCCCGGGCCTAAGCGTTGTGTGTTACGCGGATGACACGTTGGTCGTGGCCCGGGGGAGGAACTACCAAGAGTCTGCTCGTCTTGCCTGCGCAGGGGTGGCATTCGTCGTCGGTAAGATCCGAAGGCTGGGCCTCGACGTGGCCCTCGAGAAATCCCAGGCCCTGCTGTTTCACAGGGCTGGGAGAGAGCCGCCACCCGGGGCCCACCTGGTGATTGGAGGCGTCCGCGTCGAGGTCGGGGTGACTGGGTTACGGTACCTCGGTCTCGAATTGGACGGTCGTTGGAACTTCCGCGCTCATTTCGAGAAGTTGGCCCCCCGACTGATGGCGACGGCTGGATCGCTGAGTCGGCTCTTGCCAAACGTCGGAGGGCCTGACACGGTGGTGCGCCGCCTCTACGTGGGGGTGGTGCGGTCTATTGCATTATACGGAGCCCCCGTGTGGTGCCGCGCCTTGACTCGCAGAAACGTCGTGGCGCTGCGACGCCCGCAGCGTGCAATCGCAGTCAGGGCGATTCGTGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCGTTCTCGCCGGGACGCCTCCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTATGCGTGGCGTTGTGACCTTCGCGACAGGGGGGAACCACGTCCCGGAGAAGGAGCAATTAGAGCGCGGAGGCTCCAATCTCGGCGGTCTGTGTTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGTCTCCGGACCGTCGAGGCGGTGCGCCCGGTCCTCGCGAAATGGGCGAACCGTGACCAAGGGCGTCTCACCTTCCGGTTGACGCAAATGCTTACCGGCCATGGGTGTTTTGGCCGGTACCTGCATCGCGTTGCCCGGAGGGAACCGACGATGGAGTGTCACCACTGTGACTGCGACGAGGACACGGTCGAGCATACGCTCGCATATTGCCCCGCATGGGTGGAGCAACGCCGTGTCCTTGTCTCGCAAATAGGACCGGACTTGTCGCTGCCGACTGTCGTGGCTACGATGCTCGGCAGCGATGAGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGAACGAGAGAGGGAGAGCTCATCCCTCTCCGCACCTATCCGTCGCCGCCGAGCCGGGGGCCGCAGAAGGGCTTTTGTCCGACTTCGGCCCCTGTAA
Protein
MARLREILPDPEVVRIDRPVRMAEIKVTGLDECATKEEVAAAIALQGNCALANVKVGELRSTYSGTRSVWARCPVQTATLLATPAQGKPADTPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLAKCSSAVDRSGLCFRCGQSGHKAASCTAAMPHCVLCDAEKRRANHRANLNHSARAQDLLVHTMVEWSIDVAIAAEPYFVPADQDAWIGDVDGSVAITIRQAAALPPLVMVARGSGYVAARVDETVVIGVYFSPNRHLAEFEQFLGGLEVLVHRLGSRPVILAGDLNAKWVTWGSPRSDSRGRMLSEWAIAAGLCLLNRGSVATCVRWNGESHVDVTFASPSIARRTRGWRVLEGAETLSDHRYVRFELSASSRSASAMNARGEEELPRSAPRSFPRWALKRLNKELLVEAATVAAWAPVPTSPVDVESEADWFRGTMGRICDSAMPRVGSSAPRGGAYWWSPEIAQLREECVRARRRSARHRRRRLRDEDFAEVADRLRADCRQKQEALRLAIGEAKSQGMQTLLEMLDQDPWGRPYQTVRKKLRPWALPVTERLQPQQLREIVSGLFPQMERDFEPPSMGAPPRSDVSGVAEVVPPSILEEEIHAAVLRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLFEACFESGRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVIAARIVRHLTGTGPDLSEEQYGFREGRSTIDAIMRVRALSDEAVARGGVALAVSLDIANAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEDRSVVCTGHGGAVLRFPVERGVPQGSVLGPLLWNIGYDWALRSALHGPLPGLSVVCYADDTLVVARGRNYQESARLACAGVAFVVGKIRRLGLDVALEKSQALLFHRAGREPPPGAHLVIGGVRVEVGVTGLRYLGLELDGRWNFRAHFEKLAPRLMATAGSLSRLLPNVGGPDTVVRRLYVGVVRSIALYGAPVWCRALTRRNVVALRRPQRAIAVRAIRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRDRGEPRPGEGAIRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLAKWANRDQGRLTFRLTQMLTGHGCFGRYLHRVARREPTMECHHCDCDEDTVEHTLAYCPAWVEQRRVLVSQIGPDLSLPTVVATMLGSDESWKAMLDFCECTISQKEAAERERESSSLSAPIRRRRAGGRRRAFVRLRPL

Summary

EMBL
AB090825    BAC57926.1    AB078931    BAC06456.1    AB078935    BAC06462.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    KZ149896    PZC78733.1    LBMM01004272    KMQ92618.1    LBMM01003988    KMQ92922.1    LBMM01005474    KMQ91485.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01006671    KMQ90407.1    LBMM01006954    KMQ90166.1    LBMM01007036    KMQ90099.1    LBMM01015025    KMQ84953.1    LBMM01006657    KMQ90417.1    LBMM01008448    KMQ88867.1    LBMM01008445    KMQ88871.1    LBMM01004634    KMQ92224.1    LBMM01014122    KMQ85315.1    LBMM01002052    KMQ95336.1    LBMM01008422    KMQ88894.1    ABLF02041886    ABLF02013358    ABLF02013361    ABLF02054869    LBMM01015285    KMQ84870.1    ABLF02009073    ABLF02030702    ABLF02042963    LBMM01004262    KMQ92649.1    GGMR01015159    MBY27778.1    ABLF02011238    LBMM01007425    KMQ89740.1    LBMM01006977    KMQ90149.1    ABLF02011183    ABLF02041884    GGMR01006838    MBY19457.1    GFXV01003903    MBW15708.1    ABLF02018942    ABLF02041885    ABLF02011927    GALA01001777    JAA93075.1    ABLF02018098    KQ971388    KYB24913.1    GGFJ01001369    MBW50510.1    ABLF02030663    ABLF02041312    ABLF02034925    AB090815    BAC57906.1    GALA01001776    JAA93076.1    GALA01000302    JAA94550.1    GGFJ01001370    MBW50511.1    ABLF02027248    GGFK01005660    MBW38981.1    AB593321    BAK38639.1    LBMM01006996    KMQ90130.1    ABLF02018808    GGMR01012748    MBY25367.1    ABLF02007989    GFXV01002090    MBW13895.1    KU543683    AMS38371.1    GGMR01019493    MBY32112.1    GAMC01020517    JAB86038.1    GAMC01020519    GAMC01020515    JAB86040.1    ABLF02023257    GGFL01004044    MBW68222.1    GGFJ01001439    MBW50580.1    KQ972691    KXZ75806.1    ABLF02004854    ABLF02041317    ABLF02020969    AB593325    BAK38646.1    KQ972544    KXZ75869.1    KQ971310    KYB29500.1    KYB29499.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    KXZ75807.1    GAKP01002292    JAC56660.1    LBMM01005465    KMQ91492.1    ABLF02014650    GGFJ01001453    MBW50594.1    AB593327    BAK38648.1    AJ278684    CAB99192.1    ABLF02041557    GGMR01004600    MBY17219.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF01553   Acyltransferase
PF00098   zf-CCHC
PF00075   RNase_H
PF12017   Tnp_P_element
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR000663   Natr_peptide       
IPR021896   Transposase_37       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
Gene 3D
PDB
1WDU     E-value=1.57691e-09,     Score=155

Ontologies

Topology

Length:
1235
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04652
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00006
outside
1  -  1235
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
316.800667
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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