Gene

KWMTBOMO02354  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014417

Annotation

PREDICTED:_very_long-chain_specific_acyl-CoA_dehydrogenase?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr5(-):98951-103705      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.356

CDS

ATGAAAGGTGCCAAGCTGGTCCTGTGTGGCGGTCGCTGCCTCGTCCCCAAAACGACTGCGGTGGTTCCGCTTTGCAGCGGAGCTCGATCTGCCGCATCAGAGGCGCAAGCTCGAAACGGACCGAGACAGAGTGCCTCTTTCACTCTGAATCTTTTCCGTGGCCGATTTGAACCTACACAGGTGTTTCCTTTTCCGGAACCACTTTCCGATGACCAACGTCAAATGCTACAAGAGCTCGTGCCGCCAGTCGAGAAATTCTTTCAAGAAGTAAATGACCCCGCTAAGAATGATGAGAATTCAAAGATTGAGGAGGGTACCGTCGCCGGACTGTGGGATCTCGGCGCGTTCGGGCTGCAGGTGCCGGGGGAGCTCGGCGGCCTGGGGCTGTCCAACACGCAGTACGCGCGGCTCGTCGAGGTGGTCGGGGCCCACGACCTCGGCGTCGGCATCACGCTCGGGGCGCATCAGTCCATCGGCTTCAAGGGAATCTTGCTGTTCGGCAACCCGCAGCAGAAAGAGCATTACCTGCCGCGCGTCACTTCCGGCGAGTATGCCGCCTTCTGCCTCACCGAACCTTCTTCCGGTTCAGACGCCGGTTCTATCAAGACTCGAGCCGTGCTGGCGCCCGACGGCAAACATTTCATCCTAAATGGTTCGAAGATCTGGATCAGCAACGGCGGTATCGCAGAGATTATGACGGTTTTCGCACAAACTCCTATCGAGAAGGACGGAAAGACCGTTGATAAGGTGACGGCGTTCATCGTGGAGAGGTCGTTCGGCGGCGTGTCGTCCGGCCCGCCCGAGAACAAGATGGGCATCAAGTGCTCCAACACCACGGAGGTGTACTACGAGGACGTGCGCGTGCCCGTCGAGAACGTGCTGGGCGGCGTCGGGAACGGGTTCAAGGTCGCCATGAACATCCTCAACAACGGGCGCTTCGGCATGGCGGCCGCGCTGGCCGGCACGCAGCGCGCCGCCATCGCGCAGGCCGCGCAGCACGCCGCCACGCGCGTGCAGTTCGGGAAGCACCTGGCCGAGTTCGGCGCCGTGCAGGAGAAGCTGGCCCGCATGGCCATGCTGCAGTACGCCACCGAGGCGCTCGCCTACATGGTCTCCGGCAACATGGACTCCGGCGCGCAGGACTACCACCTGGAGGCCGCCATCTCGAAGGTTTTCGCTTCGGACAGCGCATGGACAGTCGTCGATGAAGCCATCCAGATCCTCGGCGGGATGGGCTACATGAAGGCGACGGGGCTGGAGCGCGTGCTGCGCGATCTCCGCATCTTCCGCATCTTCGAAGGCACCAACGACATCCTGCGTCTGTTCGTGGCGCTCACGGGAATCCAGTTCGCCGGATCTCACCTCCAGGAGCTCCAGCGAGCCTTCAAGAACCCGACCGCACATCTCGGGCTCATATTCTCGGAGGCCGGGCGGCGCGCCACGGCCGCCGTGGGGCTGGCGCGCGGGGCGGACCTGAGCTCGCTGGTGGCGCCCGAGCTGCGGGGCGCGGCGGCCGAGCTGGGCAAGCTGGTGGGCGAGCACGGGCGCGCGGTGGAGGCGGTGCTGCTGAGGCACGGGCGCGGCGTGGTGGAGCAGCAGTGCGTGCTCAACCGGCTGGCGGGCGCGGCCGTGGACGCGTACACGTCGGCCGCCGTGCTGTCCCGCGCCTCCCGCGCCGCGCGCCGCTCGCTGCCCGGCGCCGCGCACGAGCTGCGCCTGGCCGCCGCGTGGGCCGAGGAGGCGCTGGGCCGCATCCCGGCGCAGCTGGCCGCCACCCGGGACGCGCGCTCCCAGGCGCACTTCCAGCGGCTCGGCGCGCTGGGCCGCGACGTGGCCGACCAGGGCGGCCAGCTGTGTCCCAACCCGCTCTACTTGTGA

Protein

MKGAKLVLCGGRCLVPKTTAVVPLCSGARSAASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVEKFFQEVNDPAKNDENSKIEEGTVAGLWDLGAFGLQVPGELGGLGLSNTQYARLVEVVGAHDLGVGITLGAHQSIGFKGILLFGNPQQKEHYLPRVTSGEYAAFCLTEPSSGSDAGSIKTRAVLAPDGKHFILNGSKIWISNGGIAEIMTVFAQTPIEKDGKTVDKVTAFIVERSFGGVSSGPPENKMGIKCSNTTEVYYEDVRVPVENVLGGVGNGFKVAMNILNNGRFGMAAALAGTQRAAIAQAAQHAATRVQFGKHLAEFGAVQEKLARMAMLQYATEALAYMVSGNMDSGAQDYHLEAAISKVFASDSAWTVVDEAIQILGGMGYMKATGLERVLRDLRIFRIFEGTNDILRLFVALTGIQFAGSHLQELQRAFKNPTAHLGLIFSEAGRRATAAVGLARGADLSSLVAPELRGAAAELGKLVGEHGRAVEAVLLRHGRGVVEQQCVLNRLAGAAVDAYTSAAVLSRASRAARRSLPGAAHELRLAAAWAEEALGRIPAQLAATRDARSQAHFQRLGALGRDVADQGGQLCPNPLYL

Cofactor

FAD

Similarity

Belongs to the acyl-CoA dehydrogenase family.

Uniprot

A0A212FAQ9   A0A2A4JJJ5   A0A2H1W8W9   A0A068FJE7   A0A194Q5T9   S4PA42   + More
A0A2H8TU38   J9JSE3   A0A0A9YWD2   A0A146KS87   A0A2R7WAY7   A0A2J7QAH9   A0A067R0D8   D6W7D3   A0A2W1BJG1   A0A0V0G6X1   A0A2S2NRD6   A0A023F5E9   A0A224X9J1   A0A2S2R506   A0A1B6KGK5   A0A0P4VJV3   A0A1B6DU68   A0A0L7L6X0   T1ICS4   A0A1B6I437   N6T8U6   A0A1B6G2Y9   U4UJI2   A0A0K8SGZ5   K7J7J5   A0A0J7KZ01   A0A0L7QS87   A0A1W4XHL4   A0A154PP36   A0A0C9REM8   A0A0C9RAV1   E2AEK8   E2BYV9   A0A151WJV4   A0A195EX02   A0A151IWW1   A0A195BTK6   A0A158NNW9   A0A084VMQ9   A0A151I956   F4WV82   A0A3L8DKY6   Q17BX4   E9J061   A0A1L8DZ29   A0A1Q3FHM4   A0A1Q3FI21   A0A1I8PSL0   A0A0P4W1G9   A0A182NB72   A0A1Q3FGK6   A0A023EVD3   A0A182JUD3   A0A1Y1KZ03   A0A182RA72   A0A182J7F3   A0A1B0DB09   A0A182X4Z8   A0A1B0GKL3   A0A182Y8I9   A0A182GZ27   A0A0L0CK58   A0A2M4A3R3   A0A1A9ZX86   W5J382   A0A182QF10   A0A182KWM7   A0A1B0C593   A0A182SNB6   A0A182VFM0   A0A182PUH8   A0A2M4A486   D3TR49   A0A1S4HD25   A0A182TFN3   A0A1I8JU27   V4BBD4   B0XAD1   A0A182GT47   A0A182MJ79   U5EKH4   A0A1A9Y1X5   A0A2M4A4K7   A0A336M2Q0   A0A226EQX8   A0A2M3Z1C8   A0A182VTL8   A0A1Y9G9M4   A0A2G8KXD8   A0A1A9UIN8   A0A026WQW2   A0A1W4V026   A0A2M4BH60   A0A1D2MYK9  

Pubmed

22118469    26385554    26354079    23622113    25401762    26823975    + More
24845553    18362917    19820115    28756777    25474469    27129103    26227816    23537049    20075255    20798317    21347285    24438588    21719571    30249741    17510324    21282665    24945155    28004739    25244985    26483478    26108605    20920257    23761445    20966253    20353571    12364791    23254933    29023486    24508170    27289101   

EMBL

AGBW02009439    OWR50809.1    NWSH01001272    PCG71898.1    ODYU01007043    SOQ49463.1    + More
KJ622082    AID66672.1    KQ459465    KPJ00370.1    GAIX01003419    JAA89141.1    GFXV01004893    MBW16698.1    ABLF02032168    GBHO01036805    GBHO01036801    GBHO01036797    GBHO01006282    JAG06799.1    JAG06803.1    JAG06807.1    JAG37322.1    GDHC01020537    GDHC01014106    JAP98091.1    JAQ04523.1    KK854536    PTY16678.1    NEVH01016330    PNF25569.1    KK852804    KDR16191.1    KQ971307    EFA11043.1    KZ150107    PZC73397.1    GECL01002266    JAP03858.1    GGMR01006953    MBY19572.1    GBBI01002348    JAC16364.1    GFTR01007420    JAW09006.1    GGMS01015845    MBY85048.1    GEBQ01029404    JAT10573.1    GDKW01001288    JAI55307.1    GEDC01028317    GEDC01008076    JAS08981.1    JAS29222.1    JTDY01002612    KOB71094.1    ACPB03002965    GECU01026041    JAS81665.1    APGK01047094    KB741077    ENN74123.1    GECZ01012959    JAS56810.1    KB632384    ERL94254.1    GBRD01013422    JAG52404.1    LBMM01001769    KMQ95777.1    KQ414766    KOC61404.1    KQ435007    KZC13622.1    GBYB01005441    JAG75208.1    GBYB01005440    JAG75207.1    GL438870    EFN68131.1    GL451531    EFN79131.1    KQ983031    KYQ48142.1    KQ981953    KYN32427.1    KQ980843    KYN12315.1    KQ976417    KYM89759.1    ADTU01021860    ATLV01014619    KE524975    KFB39253.1    KQ978303    KYM95338.1    GL888384    EGI61848.1    QOIP01000006    RLU21100.1    CH477314    EAT43846.1    GL767291    EFZ13851.1    GFDF01002353    JAV11731.1    GFDL01007988    JAV27057.1    GFDL01007829    JAV27216.1    GDRN01080252    JAI62261.1    GFDL01008355    JAV26690.1    GAPW01000505    JAC13093.1    GEZM01075386    JAV64107.1    AJVK01000593    AJWK01029092    AJWK01029093    JXUM01098615    KQ564435    KXJ72282.1    JRES01000301    KNC32597.1    GGFK01002060    MBW35381.1    ADMH02002211    ETN57783.1    AXCN02000637    JXJN01025895    GGFK01002292    MBW35613.1    CCAG010011281    EZ423901    ADD20177.1    AAAB01008944    APCN01000643    KB199651    ESP04846.1    DS232578    EDS43628.1    JXUM01086210    JXUM01086211    JXUM01086212    KQ563552    KXJ73666.1    AXCM01004246    GANO01001812    JAB58059.1    GGFK01002423    MBW35744.1    UFQS01000326    UFQT01000326    SSX02912.1    SSX23279.1    LNIX01000002    OXA60032.1    GGFM01001555    MBW22306.1    MRZV01000318    PIK52677.1    KK107128    EZA58348.1    GGFJ01003231    MBW52372.1    LJIJ01000387    ODM98031.1   

Proteomes

UP000007151    UP000218220    UP000053268    UP000007819    UP000235965    UP000027135    + More
UP000007266    UP000037510    UP000015103    UP000019118    UP000030742    UP000002358    UP000036403    UP000053825    UP000192223    UP000076502    UP000000311    UP000008237    UP000075809    UP000078541    UP000078492    UP000078540    UP000005205    UP000030765    UP000078542    UP000007755    UP000279307    UP000008820    UP000095300    UP000075884    UP000075881    UP000075900    UP000075880    UP000092462    UP000076407    UP000092461    UP000076408    UP000069940    UP000249989    UP000037069    UP000092445    UP000000673    UP000075886    UP000075882    UP000092460    UP000075901    UP000075903    UP000075885    UP000092444    UP000075902    UP000075840    UP000030746    UP000002320    UP000075883    UP000092443    UP000198287    UP000075920    UP000069272    UP000230750    UP000078200    UP000053097    UP000192221    UP000094527   

Pfam

PF02770   Acyl-CoA_dh_M        + More
PF02771   Acyl-CoA_dh_N
PF00441   Acyl-CoA_dh_1
PF10545   MADF_DNA_bdg
PF13812   PPR_3
PF01535   PPR
PF17177   PPR_long
PF02545   Maf

Interpro

IPR036250   AcylCo_DH-like_C        + More
IPR037069   AcylCoA_DH/ox_N_sf       
IPR006089   Acyl-CoA_DH_CS       
IPR013786   AcylCoA_DH/ox_N       
IPR009075   AcylCo_DH/oxidase_C       
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR006091   Acyl-CoA_Oxase/DH_cen-dom       
IPR006578   MADF-dom       
IPR011990   TPR-like_helical_dom_sf       
IPR033490   LRP130       
IPR002885   Pentatricopeptide_repeat       
IPR033443   PPR_long       
IPR029001   ITPase-like_fam       
IPR003697   Maf-like       

SUPFAM

SSF47203   SSF47203        + More
SSF56645   SSF56645       
SSF52972   SSF52972       

Gene 3D

1.10.540.10     1.25.40.10     3.90.950.10    

CDD

cd00555  Maf

ProteinModelPortal

A0A212FAQ9   A0A2A4JJJ5   A0A2H1W8W9   A0A068FJE7   A0A194Q5T9   S4PA42   + More
A0A2H8TU38   J9JSE3   A0A0A9YWD2   A0A146KS87   A0A2R7WAY7   A0A2J7QAH9   A0A067R0D8   D6W7D3   A0A2W1BJG1   A0A0V0G6X1   A0A2S2NRD6   A0A023F5E9   A0A224X9J1   A0A2S2R506   A0A1B6KGK5   A0A0P4VJV3   A0A1B6DU68   A0A0L7L6X0   T1ICS4   A0A1B6I437   N6T8U6   A0A1B6G2Y9   U4UJI2   A0A0K8SGZ5   K7J7J5   A0A0J7KZ01   A0A0L7QS87   A0A1W4XHL4   A0A154PP36   A0A0C9REM8   A0A0C9RAV1   E2AEK8   E2BYV9   A0A151WJV4   A0A195EX02   A0A151IWW1   A0A195BTK6   A0A158NNW9   A0A084VMQ9   A0A151I956   F4WV82   A0A3L8DKY6   Q17BX4   E9J061   A0A1L8DZ29   A0A1Q3FHM4   A0A1Q3FI21   A0A1I8PSL0   A0A0P4W1G9   A0A182NB72   A0A1Q3FGK6   A0A023EVD3   A0A182JUD3   A0A1Y1KZ03   A0A182RA72   A0A182J7F3   A0A1B0DB09   A0A182X4Z8   A0A1B0GKL3   A0A182Y8I9   A0A182GZ27   A0A0L0CK58   A0A2M4A3R3   A0A1A9ZX86   W5J382   A0A182QF10   A0A182KWM7   A0A1B0C593   A0A182SNB6   A0A182VFM0   A0A182PUH8   A0A2M4A486   D3TR49   A0A1S4HD25   A0A182TFN3   A0A1I8JU27   V4BBD4   B0XAD1   A0A182GT47   A0A182MJ79   U5EKH4   A0A1A9Y1X5   A0A2M4A4K7   A0A336M2Q0   A0A226EQX8   A0A2M3Z1C8   A0A182VTL8   A0A1Y9G9M4   A0A2G8KXD8   A0A1A9UIN8   A0A026WQW2   A0A1W4V026   A0A2M4BH60   A0A1D2MYK9  

PDB

2UXW     E-value=3.13502e-167,     Score=1512

KEGG

101744941    K09479 very long chain acyl-CoA dehydrogenase [EC:1.3.8.9] | (RefSeq) very long-chain specific acyl-

PATHWAY

00071    Fatty acid degradation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0003995   GO:0050660   GO:0017099   GO:0000062   GO:0005739   GO:0016627   GO:0016491   GO:0047429   GO:0008152   GO:0005515   GO:0005488   GO:0006289   GO:0004518   GO:0006281   GO:0048384   GO:0055114  

PANTHER

PTHR46669  

Length:

625

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0487499999999999

Exp number, first 60 AAs:

0.0044

Total prob of N-in:

0.00167

outside

1  -  625

 

 

Pi

253.231341

Theta

198.428727

Tajima's D

0.797756

CLR

0.500714

CSRT

0.608219589020549

Interpretation

Uncertain