Gene

KWMTBOMO02349

Pre Gene Modal

BGIBMGA014553

Annotation

hypothetical_protein_TcasGA2_TC034914?_partial_[Tribolium_castaneum]

Location

Bomo_Chr4(+):18658492-18661598      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.898 Mitochondrial   Reliability : 1.424

CDS

ATGGTTTTTAAAGTGTTACAGATAAATATAGACCGAGGGAAAGCTGCGCACGACCTACTTCTGGCAACTGCGAGCAGTATGAACGCGGATCTCGTGATGCTCTCTGAACCCAATAGAAAACTGGCAAAAGCTGCTGGATGGGAGTGCGACACCAGGGGAGATGCAGCCCTAGTGATTCTTAACAAAACACTGACGGTTTCTGAAATTTATAGGGGGAAGGGATTTGTTGGGTTCAAGATGAAGCACTTTGCCGCGTTCAGCTGTTACATATCTCCCAACTGCAGTTTTGAGGAGTTCAAAGCTGACGTCGATGAGCTTTGGACACTACTTAAAAAACAAAAGACACCGATCCTAGTGGCAGGAGATTTTAACTCTGCATCGAGAGCGTGGGGCAGTAAAGTAACCAACAAAAGGGGCCACTACCTGCTGGAAATGGTGGCGGACCTCGACACTGTCATCATGAATGAAGGCGTGACCCCAACTTTTGAAAGAGGAGACAGAACATCCAGGCCCGACATCACCATGGCCTCTGAAACGCTGGCAGGCAAGATCAGTAATTGGCAAGTGCTCGACGAGGAGACCATGAGCGGACATAAATATATAGCCTACGAGATAAAGCATGTATTGCCTCCATCCCAGTGCTATGCACAGATGAAAAGGTGGAACCTCCAAAGGCTGGACGTAGATAAGTTCAGTAAAAGCCTGAAAGGAGCGCAGATCTCGACTCCCATGGAACTGGTGCAGGCTACGACGGCAGCGTGTGACGCTTCTATGCCAAAGCAAAACAACCGCAAGAAGAAAGGAGTCTACTGGTGGAACAAGGAAATTGCGGAAGCAAGGAAGGAGTGTTTGAAATGCCGAAGGAGGTACACAAGGAATAACAAAAAGCTAGGAAAAGGGAAAGACAGGGAAAGTAACGAAGAAAATGAACACAAAAAGCAGTATAAGGAAGCGAAACTGGAGCTACAAAGACGAATATGGAAAGCGAAAGACGATAAATGGAGGGAAGTGTGCGAGGAAGTCGACAATGATATATGGGGACTGGGATACAAAATAGTGTCAAAAAAGCTACGCGGAAACTCACCAATAAATATGGGCATGGCCCAAATTCAAAGCATAGCTGATGGCCTCTTCCCGGAACACATAGATTTCGAACGGAAAACGAAACCGTCACAGGAGTTCCCAGAGGTGACCGAGGAGGAGATCATCCAACTAAAAGCTCGCATAAAGCTTAGGAAAGCCCCAGGGCCCGACCGGATTCCGCCGGAGATAGTGACTCTAGCAGTAGCAGTAATTCCAGACAGGATAAGGCTTGTGTTGCAGAAGGTGCTGGAGTCTGGCGTCTTCCCCAACAGCTGGAAAACAGCCAGACTAGTCCTGCTAAGAAAACCAGGCAAACCCGCTGAAGATCCTGCGGGGCACAGGCCGCTATGTCTACTGGACTGCTACGGAAAGCTGCTGGAGTCGCTGATCCTAGGCAGAATAGAAAAACAACTAGTGCATTCGGACTGTTTACAAGATTCACAGTACGGGTTCAGAAAGGGGAGGTCCACAGTGGATGCAGCCAACAAGCTACTTGAGATAGCGGAAGACGCGAGACGAGGAACCCACCGCACCAGAAGAATCTGCGCAGTAGTGGCCCTCGACGTCCGTAATGCTTTCAATTCTGCATCGTGGGAGCTCATCCTGGAGGAAATGGCTGCAATAGGTATGCCGCAATACATCTATAATATCATAAACAGCTACCTCCAGGACAGATGCATTATACTGACAGACGCCGAGGGAGTGGTTGTAGAGAAAAAGGTTACCGGTGGTGTTCCGCAGGGCTCGATACTGGGCCCCACGCTGTGGAACATATTGTATGATGGGGTACTGCGCCTCGAACTGGGGGACGGGGCACAATTAATAGGCTTCGCTGACGATTTAGCTCTGGTGGTGTCAGCAAAGAAGGAAGCTGAACTGATGTCAATAGCGAATGTAGCCCTAGAGAAGATCAGCGCTTGGATGAAGCAAAAGCGGCTACACTTGGCCCCAGAAAAGACCGAGGCAATTGTGCTAAGTGGGCGAAGAAAGCTTAGCGAGATTTGCTTTACCCTCCAGGGCGTCAGGGTGGTTCCAACCGACAAACTGAAATACCTCGGGTTTTGGTTTGACAAAAGTCTGAAGTTCGGCAAACACATTGAAGAAACAACTGGTAAAGCCGAAAGACTGACGACCGCCCTTGGCCAAATCATGCCCAGGAAAGGAGGGCCGAGGTCGAGCAAGCGCAGACTATTGGCGTCCGCAATACAATCTGTGATGTTATATGGAGCACCGGTGTGGGCAAAGGTAATGAATGTAGCGAAGTACAGGAACATGTATAGCAAAGTGCAACGACAGCTGGCAATACGCATCTGTGGAGCTTACCGTACCATATCGCTAGACGCCGTCTTGGTGATAGCGGGCCTGATACCGATAGAACGGCTAGCAAAGGAACGGCAACGCTACTACCACGAGGGGACAAGAACAAGAGAAGAGGAAAGAGCACATACAATAAAAGAATGGGAACGAGACTGGCAGAAGGAGGGAAAAGGTAAGTGGACTCGTACAATCATACCCAACCTTAGGCTCTGGATGGGACGGAAACATGGCGAAACCGACAGACTGCTGACACAGGCCCTAAGTGGGCATGGAGTTTTCAACACTTACCTGCATGCAATAGGGAAAGCAGAAAGCGCAAGTTGCCCATACTGCGAACATGTTGACACACCGGAACATGCCCTATTTCAATGCATAAAGTTCTCAGAACTAAGAGAGAAAACGGAGGGAAGTGACGGAAAGGTGACTGTGGAAAACCTGATGGTGAGAATGATCCATAGTAAAGAAGAATGGGATAAATATGCGGGAATGCTCAAAGAGATAATGAGAGTGCGGGAAAAGGACGAAAGACTAAGGCAAAAATCTATCTATAATAATATATAA

Protein

MVFKVLQINIDRGKAAHDLLLATASSMNADLVMLSEPNRKLAKAAGWECDTRGDAALVILNKTLTVSEIYRGKGFVGFKMKHFAAFSCYISPNCSFEEFKADVDELWTLLKKQKTPILVAGDFNSASRAWGSKVTNKRGHYLLEMVADLDTVIMNEGVTPTFERGDRTSRPDITMASETLAGKISNWQVLDEETMSGHKYIAYEIKHVLPPSQCYAQMKRWNLQRLDVDKFSKSLKGAQISTPMELVQATTAACDASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNKKLGKGKDRESNEENEHKKQYKEAKLELQRRIWKAKDDKWREVCEEVDNDIWGLGYKIVSKKLRGNSPINMGMAQIQSIADGLFPEHIDFERKTKPSQEFPEVTEEEIIQLKARIKLRKAPGPDRIPPEIVTLAVAVIPDRIRLVLQKVLESGVFPNSWKTARLVLLRKPGKPAEDPAGHRPLCLLDCYGKLLESLILGRIEKQLVHSDCLQDSQYGFRKGRSTVDAANKLLEIAEDARRGTHRTRRICAVVALDVRNAFNSASWELILEEMAAIGMPQYIYNIINSYLQDRCIILTDAEGVVVEKKVTGGVPQGSILGPTLWNILYDGVLRLELGDGAQLIGFADDLALVVSAKKEAELMSIANVALEKISAWMKQKRLHLAPEKTEAIVLSGRRKLSEICFTLQGVRVVPTDKLKYLGFWFDKSLKFGKHIEETTGKAERLTTALGQIMPRKGGPRSSKRRLLASAIQSVMLYGAPVWAKVMNVAKYRNMYSKVQRQLAIRICGAYRTISLDAVLVIAGLIPIERLAKERQRYYHEGTRTREEERAHTIKEWERDWQKEGKGKWTRTIIPNLRLWMGRKHGETDRLLTQALSGHGVFNTYLHAIGKAESASCPYCEHVDTPEHALFQCIKFSELREKTEGSDGKVTVENLMVRMIHSKEEWDKYAGMLKEIMRVREKDERLRQKSIYNNI

Uniprot

A0A139WAH4   F7IYV5   A0A139W940   F7IYU8   J9KJG8   A0A139W9B3   + More
D6WC19   A0A139W939   F7IYV2   V5I881   A0A2H8TR36   A0A139WNC9   A0A139WN93   A0A139W9J0   A0A224XIZ2   T1DG59   T1DCM0   T1DG89   F7IYV6   A0A142LX45   J9KUM6   A0A2M4CS98   A0A2M4ADW9   A0A2M4BBV9   J9JWJ3   A0A2S2NQQ6   J9LVU7   A0A2M4BC01   A0A2M4BC28   A0A034WR48   A0A2M4BC24   A0A139W9A6   A0A2M4BC18   A0A2H8TIE5   A0A142LX43   A0A142LX37   A0A0K8VPH1   W8ANK7   X1WZ64   W8ADE4   J9KM84   F7IYV3   A0A2M4BDI3   A0A2M4CSA9   Q868S4   F7IYV7   A0A2M4CSI6   A0A1W7R6I9   A0A023EW96   A0A139W8G2   A0A2S2PRL8   A0A0K8S5I5   D7EIB0   A0A139W942   Q868S6   A0A2M4BB78   A0A2M3Z1C1   A0A2M4BB89   A0A139WA31   A0A2M4BBA0   Q9N9Z1   A0A1S4EMG7   J9L6Z9   A0A2S2PEZ7   A0A2M4BCE1   Q868S0   A0A139W8J5   X1WXT5   Q868T0   A0A2M4AK35   J9LM37   J9KT61   K7JP42   J9K6F0   J9JY94   X1WJY4   A0A2S2NJ82   J9KNS1   A0A2M4CJ33   J9KNN8   Q868S8   V9GZD3   Q868R6   A0A2S2P7D1   Q868R2   A0A2S2P488   Q868R0   A0A0J7KIY5   W8AMZ9   A0A2M4AGH2   J9LBG0   A0A2M4CL98   Q868R4   J9LQQ1   V5G2Q2   A0A2M4CJ59   A0A2M4CKD9   A0A2M4CKQ7  

Pubmed

18362917    19820115    24330624    25527032    25348373    24495485    + More
12644555    24945155    20075255    1328871   

EMBL

KQ971388    KYB24913.1    AB593325    BAK38646.1    KQ972691    KXZ75806.1    + More
AB593321    BAK38639.1    ABLF02041886    KQ972544    KXZ75869.1    KQ971309    EEZ99146.1    KXZ75807.1    AB593323    BAK38643.1    GALX01005145    JAB63321.1    GFXV01003903    MBW15708.1    KQ971310    KYB29500.1    KYB29499.1    KQ972226    KYB24577.1    GFTR01008427    JAW07999.1    GALA01000302    JAA94550.1    GALA01001777    JAA93075.1    GALA01001776    JAA93076.1    AB593326    BAK38647.1    KU543683    AMS38371.1    ABLF02041557    GGFL01004044    MBW68222.1    GGFK01005660    MBW38981.1    GGFJ01001369    MBW50510.1    ABLF02013358    ABLF02013361    ABLF02054869    GGMR01006838    MBY19457.1    ABLF02034925    GGFJ01001370    MBW50511.1    GGFJ01001439    MBW50580.1    GAKP01002292    JAC56660.1    GGFJ01001454    MBW50595.1    KXZ75870.1    GGFJ01001453    MBW50594.1    GFXV01002090    MBW13895.1    KU543682    AMS38369.1    KU543679    AMS38363.1    GDHF01029467    GDHF01011533    JAI22847.1    JAI40781.1    GAMC01020517    JAB86038.1    ABLF02011183    ABLF02041884    GAMC01020519    GAMC01020515    JAB86040.1    ABLF02018942    ABLF02041885    AB593324    BAK38644.1    GGFJ01001727    MBW50868.1    GGFL01004046    MBW68224.1    AB090815    BAC57906.1    AB593327    BAK38648.1    GGFL01004047    MBW68225.1    GEHC01000915    JAV46730.1    GAPW01000192    JAC13406.1    KQ973343    KXZ75566.1    GGMR01019493    MBY32112.1    GBRD01017378    JAG48449.1    AB593322    BAK38641.1    KXZ75805.1    AB090814    BAC57904.1    GGFJ01001164    MBW50305.1    GGFM01001554    MBW22305.1    GGFJ01001165    MBW50306.1    KQ971675    KYB24771.1    GGFJ01001166    MBW50307.1    AJ278684    CAB99192.1    ABLF02021100    GGMR01015159    MBY27778.1    GGFJ01001541    MBW50682.1    AB090817    BAC57910.1    KQ973256    KXZ75595.1    ABLF02004854    ABLF02041317    AB090812    BAC57900.1    GGFK01007771    MBW41092.1    ABLF02014650    ABLF02009073    ABLF02030702    ABLF02042963    AAZX01012143    AAZX01012194    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    ABLF02007989    ABLF02011238    GGMR01004600    MBY17219.1    ABLF02018808    GGFL01001192    MBW65370.1    ABLF02023257    AB090813    BAC57902.1    M93690    AAA29363.1    AB090819    BAC57914.1    GGMR01012748    MBY25367.1    AB090821    BAC57918.1    GGMR01011682    MBY24301.1    AB090822    BAC57920.1    LBMM01006954    KMQ90166.1    GAMC01019173    JAB87382.1    GGFK01006563    MBW39884.1    ABLF02021645    GGFL01001916    MBW66094.1    AB090820    BAC57916.1    ABLF02030663    ABLF02041312    GALX01004171    JAB64295.1    GGFL01001189    MBW65367.1    GGFL01001190    MBW65368.1    GGFL01001583    MBW65761.1   

Proteomes

UP000007266    UP000007819    UP000079169    UP000002358    UP000036403   

PRIDE

Q9N9Z1   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
PF12017   Tnp_P_element
PF13966   zf-RVT
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000663   Natr_peptide       
IPR021896   Transposase_37       
IPR026960   RVT-Znf       
IPR016067   S-AdoMet_deCO2ase_core       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF57756   SSF57756        + More
SSF56219   SSF56219       
SSF56276   SSF56276       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

A0A139WAH4   F7IYV5   A0A139W940   F7IYU8   J9KJG8   A0A139W9B3   + More
D6WC19   A0A139W939   F7IYV2   V5I881   A0A2H8TR36   A0A139WNC9   A0A139WN93   A0A139W9J0   A0A224XIZ2   T1DG59   T1DCM0   T1DG89   F7IYV6   A0A142LX45   J9KUM6   A0A2M4CS98   A0A2M4ADW9   A0A2M4BBV9   J9JWJ3   A0A2S2NQQ6   J9LVU7   A0A2M4BC01   A0A2M4BC28   A0A034WR48   A0A2M4BC24   A0A139W9A6   A0A2M4BC18   A0A2H8TIE5   A0A142LX43   A0A142LX37   A0A0K8VPH1   W8ANK7   X1WZ64   W8ADE4   J9KM84   F7IYV3   A0A2M4BDI3   A0A2M4CSA9   Q868S4   F7IYV7   A0A2M4CSI6   A0A1W7R6I9   A0A023EW96   A0A139W8G2   A0A2S2PRL8   A0A0K8S5I5   D7EIB0   A0A139W942   Q868S6   A0A2M4BB78   A0A2M3Z1C1   A0A2M4BB89   A0A139WA31   A0A2M4BBA0   Q9N9Z1   A0A1S4EMG7   J9L6Z9   A0A2S2PEZ7   A0A2M4BCE1   Q868S0   A0A139W8J5   X1WXT5   Q868T0   A0A2M4AK35   J9LM37   J9KT61   K7JP42   J9K6F0   J9JY94   X1WJY4   A0A2S2NJ82   J9KNS1   A0A2M4CJ33   J9KNN8   Q868S8   V9GZD3   Q868R6   A0A2S2P7D1   Q868R2   A0A2S2P488   Q868R0   A0A0J7KIY5   W8AMZ9   A0A2M4AGH2   J9LBG0   A0A2M4CL98   Q868R4   J9LQQ1   V5G2Q2   A0A2M4CJ59   A0A2M4CKD9   A0A2M4CKQ7  

PDB

1WDU     E-value=1.41205e-10,     Score=163

KEGG

NA   

GO

GO:0003676   GO:0008270   GO:0016021   GO:0005179   GO:0005576   GO:0003964   GO:0004519   GO:0004803   GO:0006313   GO:0008295   GO:0004014   GO:0004523  

Length:

986

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.21218

Exp number, first 60 AAs:

0.00482

Total prob of N-in:

0.00034

outside

1  -  986

 

 

Pi

3.474093

Theta

11.32497

Tajima's D

-1.954946

CLR

160.449003

CSRT

0.0177491125443728

Interpretation

Uncertain