Gene

KWMTBOMO02340

Pre Gene Modal

BGIBMGA003795

Annotation

PREDICTED:_nephrin-like_[Bombyx_mori]

Location

Bomo_Chr4(+):18366772-18513176      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 0.826

CDS

ATGTTAGAAACCATAGAATGTTTGGTCTATATGGAAATCGAACCCACGACCCTCGACGCACCAAATTTTTCAAATAGCAAATGTTGTTACAGCTTCGACGTCCGCGGGAAGCCATTGTCAGAAGCCCGACATTGGTCCGCTCCGGAAGTGTTCGGTCCTCGAGCCCACTTCTCCACCTCCCCCGCCCCGGCGTCGCTGCTGGTCCGGGACGTGAAGCGCCGCGACGAGGGCGTCTACAGGTGCCGGGTGGATTTCCGCAACACGCAGACAACTAGTTTCCGCTACAATCTTACTGTTGTCGTGCCACCTGAGAAGCCAGTAGTGGTCGACAGGTGGGGTCGCGTAATCAACACTACGACCCTTGGTCCTCACGAGGAAGGTGATGACGTCCTCCTCACGTGCAGAGTACTCGGAGGTCGACCAGAGCCTTCGGTGCGTTGGCTGGTGAATGGAGTCCTTGTCGATGAGGAGTATGAGCACAATACTGGTGACGTCATAGAGAACCGACTACTATGGCCCGCGATACGACGCGCCGACTACGCAGCAGTCTTCACTTGCCAAGCTGCTAACTCGCATCTAGTGCCGCCCAAGGAGGTGTCGCTGGTACTGGACATGTTCTTGCGACCATTAACCGTAGAAATAAAGAAGCCTGCGGAAACGGGAGAAGGAGGAGTTCTAACAGCGGAACGGCGCTACGAAGTGGCCTGCGAGTCAGCGGGCAGCCGTCCCCCGGCCATCGTCACTTGGTTCAAGGGCAAGAGACAGCTGAAGAGGATAACGGAGGAGCTCCGGGACAACCTGACTATGAGCGTGATGAGCTTCGTTCCGACCCTGGATGATGACGGAAAACCAATCACATGTCGAGCCGAGAATCCTAACGTAACCACCCTATCTATGGAAACCTCATGGACTATCAACGTAGTCTACCCTCCAGTCGTCCGACTTCGCCTGGGCAGCTCGTTGGCAGCAGGAGACATCAAGGAGGGAGACGACGTCTACTTCGAGTGTCATGTGAGGGCCAACCCTCCTGCTAGGAAACTCTCCTGGCTACATGATGATCGTCCACTGGCTCACAACGCGAGTGCACGCGTGTTCCACAGCAACCAGAGCCTTGTGCTGCAGAAAGTGACGCGACACAGCAGCGGACGGTATGCCTGCTCTGCACTCAATGCAGAAGGAGAGACTGTATCTAATGAACTGCACTTTAGAGTTAAATATGCACCTTCCTGTCGAAGCGGCGGTGTGTCGGTGGTGGGTGCGGCCCGCGGTGAGTCCGTGGTAATAGTGTGCAAAGTGGACGCCGACCCCCCCGCCGCCGTCTTCAAGTGGAAGTTCAACAACTCCGGGGAGACCCTCGACGTCGCCGCCGACAGATACACCTCTAATGGCAGCGCCTCTAGCCTTAAGTACACTCCAGTAGCCGACCTGGACTATGGGACCCTGTCGTGCTCGGCGTCCAACGAGGTAGGCGCACAGCTCGCCCCCTGTGTGTTCCAGATGGTGGTGGCAGGCAAGCCGCACGCCCCGCGCAACTGCACGCTGTGGAATCAGACGGCGGAGTCGGTGGAGGTGTCGTGCGTGGCGGGCTTCGACGGCGGCCTGCCGCAGACCTTCCTGCTAGAGGTCTACCATGCCGACGGATCCTCCCCGAGAGTAAACTTAACATCAGAAGAGCCGTCGTGGACGATACGAGGATTGGAGTGGGACGTGCGCTTTCGACTCATAGCCGTGGCGGTGAACAGCAAGGGTCGATCACCACCCGCCTCCCTAGATGACGTGCTGTTCAGAGACCCGGAGAAGAGAACAGCAACGGAAGCGTCACTAGGCATGAGCAGCATGTTGGGCGCAGCGGGAGCGGGAGCGGGTGCGATATTCGCGCTGTTGGCGGGGGCGTGTGCCGTGTCGCTGCGACGGAGGCGGCGGCCGCGTCTAGCCAAGCCGCTGCCCGCGCCGCTCGTCACCCAGCACCTCACTCTTAAACAACCAGAATTGGACGACGCTGAACCAGATCTGATACCCAATAATTATTGTGAAGCGACGAGCGCGCCTAGTCTCTCCGTGTCGTCTCCCGCGCGGACAGGCCCCGCACCCCTCACCACCCCGGCGTGCAACGGTCCTGGCGCGTCGTGGACGTGGGGCGCGCGGTGCCGGGAGCCGGCGGACGCGGCGCTGGGGCGGAGCGCCTCCGCCACGCTGCGAGCCGCCGCGGACCTCAACGTTGACGCCATCAAAGAGAAACTCTTAGACAATCGAATCCCGGAATCCTGCGTCTAG

Protein

MLETIECLVYMEIEPTTLDAPNFSNSKCCYSFDVRGKPLSEARHWSAPEVFGPRAHFSTSPAPASLLVRDVKRRDEGVYRCRVDFRNTQTTSFRYNLTVVVPPEKPVVVDRWGRVINTTTLGPHEEGDDVLLTCRVLGGRPEPSVRWLVNGVLVDEEYEHNTGDVIENRLLWPAIRRADYAAVFTCQAANSHLVPPKEVSLVLDMFLRPLTVEIKKPAETGEGGVLTAERRYEVACESAGSRPPAIVTWFKGKRQLKRITEELRDNLTMSVMSFVPTLDDDGKPITCRAENPNVTTLSMETSWTINVVYPPVVRLRLGSSLAAGDIKEGDDVYFECHVRANPPARKLSWLHDDRPLAHNASARVFHSNQSLVLQKVTRHSSGRYACSALNAEGETVSNELHFRVKYAPSCRSGGVSVVGAARGESVVIVCKVDADPPAAVFKWKFNNSGETLDVAADRYTSNGSASSLKYTPVADLDYGTLSCSASNEVGAQLAPCVFQMVVAGKPHAPRNCTLWNQTAESVEVSCVAGFDGGLPQTFLLEVYHADGSSPRVNLTSEEPSWTIRGLEWDVRFRLIAVAVNSKGRSPPASLDDVLFRDPEKRTATEASLGMSSMLGAAGAGAGAIFALLAGACAVSLRRRRRPRLAKPLPAPLVTQHLTLKQPELDDAEPDLIPNNYCEATSAPSLSVSSPARTGPAPLTTPACNGPGASWTWGARCREPADAALGRSASATLRAAADLNVDAIKEKLLDNRIPESCV

Uniprot

A0A139WE49   A0A067QVT8   A0A2Y9D349   A0A2Y9D0W0   A0A1S4H2N4   A0A3F2YUY3   + More
A0A2Y9D3H7   Q7Q1Q0   A0A336MF21   A0A1I8PYM0   A0A1I8N3L1   B3MLD5   A0A0J9R2I5   B3N5M1   B4MZ69   A0A1W4W7L2   B4P0W6   C4IXX0   B4LRZ2   A0A1J1ILM7   B4KE46   A0A3B0K6G8   Q59DZ1   B4HXK7   A0A1J1IJT1   A0A154P3F0   A0A195EH15   A0A195F6R9   A0A158NIA0   A0A195AWT4   A0A026WW65   A0A182Y5L5   A0A182QB13   A0A151WJS4   Q7Q1W7   A0A336MAP7   B5DH28   A0A1A9ZVX1   A0A1B0B7L8   Q16WY2   A0A0L7R734   W5JDD9   A0A2S2Q9A9   A0A3L8D982   A0A2H8TGU6   A0A2S2NCV8   Q7PN36   A0A1S4GYP1   A0A182XL95   A0A182ICC9   A0A182K5C4   A0A182PTY4   A0A182NTT6   A0A182JAT4   A0A182RMB4   A0A182W6L7   Q16UD9   A0A182F1F4   A0A1A9W080   A0A1W4WFY8   A0A1W4WQT7   A0A1W4WRT9   D6WPK9   A0A2J7PYN3   A0A0K8T359   A0A0A9ZBH5   A0A1Y1NKS5   A0A1B6G259   A0A067RCL4   A0A1I8PBW5   A0A336MBR2   A0A182P2F8   E0VML7   A0A1B6LB71   C0PTV4   Q16ZD1   A0A336M9R3   A0A182X9U7   A0A182Y570   A0A182L937   A0A1I8NIL5   A0A0Q9W1D8   A0A1B6C6V9  

Pubmed

18362917    19820115    24845553    12364791    20966253    25315136    + More
17994087    22936249    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21347285    24508170    25244985    15632085    17510324    20920257    23761445    30249741    25401762    26823975    28004739    20566863   

EMBL

KQ971354    KYB26230.1    KK853189    KDR10051.1    APCN01005643    APCN01005644    + More
APCN01005645    APCN01005646    APCN01005647    AAAB01008980    EAA14139.4    UFQT01001107    SSX28944.1    CH902620    EDV30724.2    CM002910    KMY90306.1    CH954177    EDV57980.2    CH963913    EDW77465.2    CM000157    EDW89040.2    BT083401    BT083402    ACQ83315.1    ACQ83316.1    CH940649    EDW63668.2    CVRI01000055    CRL01064.1    CH933807    EDW11791.2    OUUW01000033    SPP89817.1    AE014134    AAX52666.3    AHN54460.1    CH480818    EDW51787.1    CVRI01000054    CRL00448.1    KQ434809    KZC06465.1    KQ978957    KYN27172.1    KQ981763    KYN36076.1    ADTU01016137    ADTU01016138    ADTU01016139    ADTU01016140    ADTU01016141    ADTU01016142    ADTU01016143    ADTU01016144    ADTU01016145    ADTU01016146    KQ976725    KYM76510.1    KK107078    EZA60257.1    AXCN02000750    KQ983039    KYQ48081.1    EAA14531.4    UFQT01000825    SSX27414.1    CH379058    EDY69751.2    JXJN01009684    JXJN01009685    CH477551    EAT39106.1    KQ414643    KOC66685.1    ADMH02001859    ETN60829.1    GGMS01004947    MBY74150.1    QOIP01000011    RLU16894.1    GFXV01001542    MBW13347.1    GGMR01002432    MBY15051.1    AAAB01008964    EAA12841.5    APCN01000794    AXCP01007831    CH477624    EAT38129.1    EFA06826.2    NEVH01020344    PNF21422.1    GBRD01006221    JAG59600.1    GBHO01002348    GDHC01008300    JAG41256.1    JAQ10329.1    GEZM01002471    JAV97235.1    GECZ01013250    JAS56519.1    KK852551    KDR21492.1    UFQT01000721    SSX26761.1    DS235315    EEB14623.1    GEBQ01019020    JAT20957.1    BT071799    ACN43735.2    CH477492    EAT40016.1    SSX26760.1    CH940652    KRF78738.1    GEDC01028050    JAS09248.1   

Proteomes

UP000007266    UP000027135    UP000075903    UP000075840    UP000075882    UP000076407    + More
UP000007062    UP000095300    UP000095301    UP000007801    UP000008711    UP000007798    UP000192221    UP000002282    UP000008792    UP000183832    UP000009192    UP000268350    UP000000803    UP000001292    UP000076502    UP000078492    UP000078541    UP000005205    UP000078540    UP000053097    UP000076408    UP000075886    UP000075809    UP000001819    UP000092445    UP000092460    UP000008820    UP000053825    UP000000673    UP000279307    UP000075881    UP000075885    UP000075884    UP000075880    UP000075900    UP000075920    UP000069272    UP000091820    UP000192223    UP000235965    UP000009046   

PRIDE

C4IXX0    Q59DZ1    C0PTV4   

Pfam

PF08205   C2-set_2        + More
PF07686   V-set
PF00041   fn3
PF00047   ig
PF10204   DuoxA
PF07679   I-set

Interpro

IPR003961   FN3_dom        + More
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR013162   CD80_C2-set       
IPR036116   FN3_sf       
IPR013106   Ig_V-set       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR013151   Immunoglobulin       
IPR018469   Dual_oxidase_maturation_fac       
IPR013098   Ig_I-set       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A139WE49   A0A067QVT8   A0A2Y9D349   A0A2Y9D0W0   A0A1S4H2N4   A0A3F2YUY3   + More
A0A2Y9D3H7   Q7Q1Q0   A0A336MF21   A0A1I8PYM0   A0A1I8N3L1   B3MLD5   A0A0J9R2I5   B3N5M1   B4MZ69   A0A1W4W7L2   B4P0W6   C4IXX0   B4LRZ2   A0A1J1ILM7   B4KE46   A0A3B0K6G8   Q59DZ1   B4HXK7   A0A1J1IJT1   A0A154P3F0   A0A195EH15   A0A195F6R9   A0A158NIA0   A0A195AWT4   A0A026WW65   A0A182Y5L5   A0A182QB13   A0A151WJS4   Q7Q1W7   A0A336MAP7   B5DH28   A0A1A9ZVX1   A0A1B0B7L8   Q16WY2   A0A0L7R734   W5JDD9   A0A2S2Q9A9   A0A3L8D982   A0A2H8TGU6   A0A2S2NCV8   Q7PN36   A0A1S4GYP1   A0A182XL95   A0A182ICC9   A0A182K5C4   A0A182PTY4   A0A182NTT6   A0A182JAT4   A0A182RMB4   A0A182W6L7   Q16UD9   A0A182F1F4   A0A1A9W080   A0A1W4WFY8   A0A1W4WQT7   A0A1W4WRT9   D6WPK9   A0A2J7PYN3   A0A0K8T359   A0A0A9ZBH5   A0A1Y1NKS5   A0A1B6G259   A0A067RCL4   A0A1I8PBW5   A0A336MBR2   A0A182P2F8   E0VML7   A0A1B6LB71   C0PTV4   Q16ZD1   A0A336M9R3   A0A182X9U7   A0A182Y570   A0A182L937   A0A1I8NIL5   A0A0Q9W1D8   A0A1B6C6V9  

PDB

6IAA     E-value=2.87736e-14,     Score=194

KEGG

101741569    no KO assigned | (RefSeq) nephrin-like

GO

GO:0016021   GO:0015031   GO:0005789   GO:0005515   GO:0005737   GO:0006606   GO:0008565   GO:0005488   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

Length:

757

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.32947

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00004

outside

1  -  613

TMhelix

614  -  636

inside

637  -  757

 

 

Pi

2.510797

Theta

16.413424

Tajima's D

-1.984025

CLR

1785.989943

CSRT

0.0145992700364982

Interpretation

Possibly Positive selection