Gene

KWMTBOMO02336

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(-):18285949-18287017      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.01 Nuclear   Reliability : 1.375

CDS

ATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGTAGAGCTGCTGGCCGATACATTGCAAGCCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGTCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAACCCGGTAAACAAAAAAATCATCCGACGAGCCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCCCGGAGTACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGAATAGTCTCGTGCTCGTCATAAGGGACTTCTTGTCGAACCGCTCTTTCGATATCGAGTCGAGGGAACCCGCTCCTACCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACTCCTCCTATTTAGCTTATTCGTCAATGATATTCCCGGGTCGCCGCCGACCCAGTTAG

Protein

MPPLVGPSGRLAAFDDDEKVELLADTLQAQCTPSTQSVDPVHVELVDSEVERRVSLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKQKNHPTSRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLPEYILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPNSLVLVIRDFLSNRSFDIESREPAPTHDLSQLESRKALSSHSSYLAYSSMIFPGRRRPS

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   D7EM17   + More
A0A139W8G9   A0A1Y1NA23   A0A139WA11   A0A2S2Q352   A0A1Y1K0C8   A0A2S2NPT6   A0A139W8K2   A0A2S2PEZ9   K7IN67   A0A087T6I1   J9KLB1   A0A2H8U0H5   A0A1B6J5Z9   V5GNJ2   J9KKL3   A0A2S2QJM7   A0A2S2PBB4   A0A2S2PX53   X1WWC4   V5GNF3   A0A2S2QEE0   X1WXR6   A0A023F6S4   A0A2S2PWA8   A0A023EYS8   A0A2S2RB48   X1WMU5   X1WN18   X1WWX6   A0A2S2QA24   A0A2S2RAN7   A0A2S2PPK8   J9KC83   X1WXE6   A0A2S2R9D4   X1WR00   X1XGU0   A0A087UCW3   A0A2S2N814   J9KEU4   X1WVL6   A0A2S2R4B7   Q95SX7   A0A2L2YN79   X1X2N2   A0A087SWJ5   A0A2S2P698   A0A232ENU1   A0A023F754   A0A2S2QLY2   J9LC15   J9KPF1   R4FPB9   A0A2S2NGV8   X1WXU3   X1WZH0   A0A182GB02   X1WTA1   A0A2S2N6C8   A0A2S2N629   A0A2J7QJ98   X1WMI5   A0A2A4K8E7  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    18362917    19820115    28004739    + More
20075255    25474469    7753626    12537569    26561354    28648823    26483478   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ973412    EFA12510.2    KQ973342    KXZ75569.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    GGMS01002955    MBY72158.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GGMR01006581    MBY19200.1    KQ973213    KXZ75606.1    GGMR01015412    MBY28031.1    KK113655    KFM60720.1    ABLF02040174    ABLF02040183    ABLF02055266    GFXV01007093    MBW18898.1    GECU01013097    JAS94609.1    GALX01005299    JAB63167.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMS01008766    MBY77969.1    GGMR01014053    MBY26672.1    GGMS01000737    MBY69940.1    ABLF02003961    ABLF02059872    GALX01005359    JAB63107.1    GGMS01006359    MBY75562.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    GBBI01001646    JAC17066.1    GGMS01000625    MBY69828.1    GBBI01004395    JAC14317.1    GGMS01018022    MBY87225.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02036422    ABLF02042484    GGMS01005381    MBY74584.1    GGMS01017914    MBY87117.1    GGMR01018716    MBY31335.1    ABLF02033757    ABLF02016634    GGMS01017365    MBY86568.1    ABLF02003242    ABLF02006260    ABLF02042516    ABLF02055645    KK119261    KFM75202.1    GGMR01000676    MBY13295.1    ABLF02040650    ABLF02040651    ABLF02056776    ABLF02042385    GGMS01015632    MBY84835.1    AY060438    AAL25477.1    IAAA01035749    LAA09611.1    KK112269    KFM57234.1    GGMR01012305    MBY24924.1    NNAY01003095    OXU19992.1    GBBI01001642    JAC17070.1    GGMS01009480    MBY78683.1    ABLF02020655    ABLF02039168    ABLF02061060    ABLF02041767    GAHY01000238    JAA77272.1    GGMR01003407    MBY16026.1    ABLF02008933    ABLF02034467    JXUM01241784    KQ635293    KXJ62492.1    ABLF02037660    GGMR01000086    MBY12705.1    GGMR01000005    MBY12624.1    NEVH01013558    PNF28668.1    ABLF02004232    ABLF02004856    ABLF02004857    ABLF02035566    ABLF02056910    NWSH01000032    PCG80497.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000054359    UP000007819    UP000215335    + More
UP000069940    UP000249989    UP000235965    UP000218220   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF07727   RVT_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   D7EM17   + More
A0A139W8G9   A0A1Y1NA23   A0A139WA11   A0A2S2Q352   A0A1Y1K0C8   A0A2S2NPT6   A0A139W8K2   A0A2S2PEZ9   K7IN67   A0A087T6I1   J9KLB1   A0A2H8U0H5   A0A1B6J5Z9   V5GNJ2   J9KKL3   A0A2S2QJM7   A0A2S2PBB4   A0A2S2PX53   X1WWC4   V5GNF3   A0A2S2QEE0   X1WXR6   A0A023F6S4   A0A2S2PWA8   A0A023EYS8   A0A2S2RB48   X1WMU5   X1WN18   X1WWX6   A0A2S2QA24   A0A2S2RAN7   A0A2S2PPK8   J9KC83   X1WXE6   A0A2S2R9D4   X1WR00   X1XGU0   A0A087UCW3   A0A2S2N814   J9KEU4   X1WVL6   A0A2S2R4B7   Q95SX7   A0A2L2YN79   X1X2N2   A0A087SWJ5   A0A2S2P698   A0A232ENU1   A0A023F754   A0A2S2QLY2   J9LC15   J9KPF1   R4FPB9   A0A2S2NGV8   X1WXU3   X1WZH0   A0A182GB02   X1WTA1   A0A2S2N6C8   A0A2S2N629   A0A2J7QJ98   X1WMI5   A0A2A4K8E7  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

296

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

10.75466

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04537

outside

1  -  296

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

51.790308

CSRT

0

Interpretation

Uncertain