Gene

KWMTBOMO02332

Annotation

Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]

Location

Bomo_Chr4(-):18181940-18185047      View in EpiBrowser

Full name

SAGA-associated factor 11      

Location in the cell

Nuclear   Reliability : 4.382

CDS

ATGGATATTTTTGTGGTGGATAATGAAAATTTTAACTATGACTTCTTAATTGGTTTGGATTGTATAAAAAAATTCAAATTAATACAAAATGAAGAACTTAACATCATACAATATCCCGAAAAGAAAAGCATAATCTCAAATGAACATTGTTCTAATGAGAATGTAACAAATGTCGGAATTCCTGATGTACTAGGTGACAAAAATAAAGAACAAACATTTAAAGAGAGAATAGAAGAGAAAGAGAAGATAGAGATGGAACTATACTCTGAGATAGTAAAAAAGGGTACTACTATAAATACCAACAAATTGTGTGAAATTAATTTCAATGAACATGTAAACATTGATGAATTTCAAATGTCTGTAAATCATCTAGATTTATATCAGCAATCAAAAATTGAGAAGTTAGTAGATAAATACAAATCTGTTTTTGCTAAGGACAAATATGATGTTGGCTCTGTGCAGGATTATGAAGCCCATATAGACTTGATGGTAGATAAATACTGCTATAAGCGTCCGTACAGATGCACAATTGAAGACAGAACAGAAATTGAAAGTCAAATATCGAAGCTACTACAGAAAAATTTGATAGAGGAATCTTACAGCCCGTTTGCTGCTCCTGTAACTCTAGCATATAAGAAAGAAGATGATAAAAAAACAAGATTATGCATAGATTTCAGAGATTTAAACAAAATAGTAGTTCCACAATCACAACCTTTCCCACTTATAGAGGACTTAATGACCAAAACAGTAAACTGTAAGTATTATTCTACATTAGACATAAACTCAGCATTTTGGTCGATCCCATTGAAAATTCAAGATAGACATAAGACTGCTTTTGTGACACAAGAAGGACATTTTCAATGGACTTGTCTCCCATTTGGGTTAAAGACTGCACCAGCGATTTTCCAAAGAATATTGAGCAATATTATAAGAAAACACAGACTATCTAACTTTGCAGTAAACTTTATTGACGACATCTTAATTTTTTCTAAAACTTTTGAGGAACATATACAACACATATCGAGACTACTGGAAGCAATACAAAAGGAAGGGTTTAGACTGAAGTTTTCAAAATGTACATTTGCAAGTCACCATGCTAAATACTTGGGTCATATAATAGAAGACAATTCAGTTAGACCTCTGAAAGATTATTTAACTGCTGTCAAAAGCTTCCCAATTCCAGAAACAAGCAAAAATATACGGCAGTTTTTGGGAAAAGTAAATTTTCATCATAAGTTTGTACCACATAGTGCAATTATCCTCGATCCATTACATAACTTATTAAGGAAAGATGTGAAATTTGTATGGACGGCAGAATGCCAGGAAGCATTTGATAAAATTAGAGCATTGCTTTGCTCAGAACCAATCCTAAAAATATTTGACCCAGATTCACCGATAAGAATTTACACAGATGCTAGTATCAAAGGAGTTGGAGCAGTGTTGAAACAAGACGATGAAAACGGCGTGAGTAAACCGGTTGCTTATTTTTCGAAGAAATTAACAGAAGCACAGAAAAAGAAGAAGGCAATATACTTAGAATGTCTGGCGATAAAAGAAGCAGTCAAATACTGGCAACATTGGCTTATGGGAAAAGAATTTTTGGTATACACAGATCATAAACCCCTGGAAAATATGAACATTAAAGCTCGAACTGATGAGGAACTAGGTGATTTAACATATTATCTATCACAATATAATTTTGAAATTAAATACAACCCAGGAAAATCAAATCAAGAAGCGGACTGCTTAAGCCGAAATCCAGTCCTAGAAGCAAATGATAATAACGACGATTTTTTAAAGGTCGTAAATTTAATCGACCTACAAGAAATAAAGAATGACCAGCTAACAAATCCAGACCTACAAAAAGAAAAGAATAAGCACATATTAGAGAATGAAGTTTATTACAAGAAAAATAAAAGAAGAAATAAGATTATACTGTCAGAAAAACTTAGCAAAGCTCTAATAAAAAAAGTCCATGACACATACTGCCACATTGGAAGAACCCAGATGACAAATAAAATAACACCATTCTTTTCAGCCAAGAATATTACAGCAAACATTAATAAAATGTGTGATGCGTGTGAAACCTGCATTAAAAACAAGTCCAGGAGGAAGTCGAAATATGGTTTAATGTCACATTTGGGACCAGCCACACACCCGTTTGAAATTGTATCCATCGATACTATTGGGGGCTTTGGAGGATCCCGATCAACCAAAAGAGAAGGGTATAAATTGGAAGAAGGAGATAGTGTTTATGTGGAGAATGGAAATAAACTAAACAGGAAGAAAATGGATGAATTGAGAACAGGGCCATACAAAATACTAAAGAAGATTTCAGAATCGATCTATGAAGTTGACACCGGACACAAAAAAGCAGAATCAAACCTCTATCATATAACAAAGTTGTCTCCAGTGTCTATCTGA

Protein

MDIFVVDNENFNYDFLIGLDCIKKFKLIQNEELNIIQYPEKKSIISNEHCSNENVTNVGIPDVLGDKNKEQTFKERIEEKEKIEMELYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKIEKLVDKYKSVFAKDKYDVGSVQDYEAHIDLMVDKYCYKRPYRCTIEDRTEIESQISKLLQKNLIEESYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSQPFPLIEDLMTKTVNCKYYSTLDINSAFWSIPLKIQDRHKTAFVTQEGHFQWTCLPFGLKTAPAIFQRILSNIIRKHRLSNFAVNFIDDILIFSKTFEEHIQHISRLLEAIQKEGFRLKFSKCTFASHHAKYLGHIIEDNSVRPLKDYLTAVKSFPIPETSKNIRQFLGKVNFHHKFVPHSAIILDPLHNLLRKDVKFVWTAECQEAFDKIRALLCSEPILKIFDPDSPIRIYTDASIKGVGAVLKQDDENGVSKPVAYFSKKLTEAQKKKKAIYLECLAIKEAVKYWQHWLMGKEFLVYTDHKPLENMNIKARTDEELGDLTYYLSQYNFEIKYNPGKSNQEADCLSRNPVLEANDNNDDFLKVVNLIDLQEIKNDQLTNPDLQKEKNKHILENEVYYKKNKRRNKIILSEKLSKALIKKVHDTYCHIGRTQMTNKITPFFSAKNITANINKMCDACETCIKNKSRRKSKYGLMSHLGPATHPFEIVSIDTIGGFGGSRSTKREGYKLEEGDSVYVENGNKLNRKKMDELRTGPYKILKKISESIYEVDTGHKKAESNLYHITKLSPVSI

Similarity

Belongs to the SGF11 family.
Belongs to the tubulin family.

Uniprot

A0A0N1PG61   A0A2S2NJQ2   A0A0K8TMU5   A0A0N0PCL2   A0A0J7K739   A0A1B6C1P7   + More
A0A1B6DVG3   A0A1B6E784   A0A0K8TLR3   A0A2S2PQS7   A0A2R7W771   A0A2R7WSP7   A0A1B6CSL2   A0A2L2Y3Y7   A0A2L2Y4F2   A0A087U2Q4   A0A158P4Q1   A0A158P4S6   A0A158P5I9   L7MCS8   L7MA76   A0A0C9RXL6   A0A388K567   A0A090XDG5   A0A1E1XL52   L7LW12   L7LW11   L7LYQ9   A0A388KWR7   A0A1E1XKD7   L7LV95   L7ML53   L7LY95   A0A1E1X293   A0A388LMS8   L7LYP4   A0A388MA01   A0A147BMC5   L7MFA7   A0A388JJI1   A0A388KXH3   A0A1Y1KJI2   L7MAW1   A0A388KWG6   L7MBZ6   L7LV55   A0A388K9A8   A0A388KQG1   A0A388L150   A0A388LDS5   A0A388LN87   A0A388KQM9   L7MML3   L7LVQ9   A0A2R5L8F2   A0A388JUK0   A0A388KZE6   A0A388L2E3   A0A388M7C9   A0A2R5LEZ4   A0A388KIW5   A0A1Y1KFN9   A0A1Y1KFM9   A0A2R5LP11   A0A147BJI2   L7ML73   A0A388KSU5   A0A388L5S1   A0A034VPR8   A0A147BAZ1   A0A139WIQ0   L7LWL7   A0A131XNQ4   A0A139WJA1   A0A147BIK4   A0A388K1C8   A0A388JV64   A0A355ABF2  

Pubmed

26354079    26369729    26561354    25576852    30007417    25970599    + More
29209593    28503490    29652888    28004739    25348373    18362917    19820115    30148503   

EMBL

KQ460869    KPJ11799.1    GGMR01004768    MBY17387.1    GDAI01002358    JAI15245.1    + More
KQ460501    KPJ14174.1    LBMM01012506    KMQ86187.1    GEDC01029866    JAS07432.1    GEDC01007645    JAS29653.1    GEDC01003500    JAS33798.1    GDAI01002319    JAI15284.1    GGMR01019146    MBY31765.1    KK854406    PTY15552.1    KK855443    PTY22588.1    GEDC01020941    JAS16357.1    IAAA01005657    LAA02892.1    IAAA01005656    LAA02887.1    KK117876    KFM71643.1    CAEY01001805    CAEY01001938    CAEY01000944    GACK01004001    JAA61033.1    GACK01004074    JAA60960.1    GBYB01013920    JAG83687.1    BFEA01000059    GBG65156.1    GBIH01000760    JAC93950.1    GFAA01003618    JAT99816.1    GACK01009237    JAA55797.1    GACK01009039    JAA55995.1    GACK01009040    JAA55994.1    BFEA01000202    GBG74403.1    GFAA01003652    JAT99782.1    GACK01009043    JAA55991.1    GACK01000334    JAA64700.1    GACK01009195    JAA55839.1    GFAC01005811    JAT93377.1    BFEA01000446    GBG83646.1    GACK01009041    JAA55993.1    BFEA01000891    GBG91289.1    GEGO01003466    JAR91938.1    GACK01003086    JAA61948.1    BFEA01002572    GBG41953.1    BFEA01000209    GBG74741.1    GEZM01081635    JAV61573.1    GACK01004027    JAA61007.1    GBG74399.1    GACK01003662    JAA61372.1    GACK01009547    JAA55487.1    BFEA01000076    GBG66617.1    BFEA01000162    GBG72311.1    BFEA01000235    GBG75978.1    BFEA01000347    GBG80460.1    BFEA01000451    GBG83778.1    BFEA01000163    GBG72342.1    GACK01000375    JAA64659.1    GACK01009357    JAA55677.1    GGLE01001609    MBY05735.1    BFEA01000020    GBG61486.1    BFEA01000222    GBG75323.1    BFEA01000245    GBG76456.1    BFEA01000809    GBG90415.1    GGLE01003869    MBY07995.1    BFEA01000123    GBG70001.1    GEZM01089268    GEZM01089261    JAV57577.1    GEZM01089269    GEZM01089265    JAV57567.1    GGLE01007069    MBY11195.1    GEGO01004488    JAR90916.1    GACK01000487    JAA64547.1    BFEA01000178    GBG73141.1    BFEA01000273    GBG77650.1    GAKP01014483    JAC44469.1    GEGO01007454    JAR87950.1    KQ971338    KYB27888.1    GACK01009042    JAA55992.1    GEFM01006973    JAP68823.1    KYB27887.1    GEGO01004785    JAR90619.1    BFEA01000043    GBG63850.1    BFEA01000021    GBG61643.1    DNYW01000170    HBK71150.1   

Proteomes

UP000053240    UP000036403    UP000054359    UP000015104    UP000265515    UP000007266    + More

PRIDE

L7MCS8   

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF17917   RT_RNaseH
PF13358   DDE_3
PF01498   HTH_Tnp_Tc3_2
PF08209   Sgf11
PF09668   Asp_protease
PF00098   zf-CCHC
PF14392   zf-CCHC_4
PF00091   Tubulin
PF03953   Tubulin_C
PF00077   RVP

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR041373   RT_RNaseH       
IPR002492   Transposase_Tc1-like       
IPR038717   Tc1-like_DDE_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR013246   SAGA_su_Sgf11       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR001878   Znf_CCHC       
IPR016197   Chromo-like_dom_sf       
IPR001995   Peptidase_A2_cat       
IPR036875   Znf_CCHC_sf       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR034122   Retropepsin-like_bacterial       
IPR017975   Tubulin_CS       
IPR037103   Tubulin/FtsZ_C_sf       
IPR003008   Tubulin_FtsZ_GTPase       
IPR008280   Tub_FtsZ_C       
IPR000217   Tubulin       
IPR018316   Tubulin/FtsZ_2-layer-sand-dom       
IPR023123   Tubulin_C       
IPR002454   Gamma_tubulin       
IPR036525   Tubulin/FtsZ_GTPase_sf       
IPR018061   Retropepsins       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF54160   SSF54160       
SSF57756   SSF57756       
SSF52490   SSF52490       
SSF55307   SSF55307       

Gene 3D

3.30.420.10     2.40.70.10     1.10.287.600     3.30.1330.20     3.40.50.1440    

CDD

cd05483  retropepsin_like_bacteria
cd02188  gamma_tubulin

ProteinModelPortal

A0A0N1PG61   A0A2S2NJQ2   A0A0K8TMU5   A0A0N0PCL2   A0A0J7K739   A0A1B6C1P7   + More
A0A1B6DVG3   A0A1B6E784   A0A0K8TLR3   A0A2S2PQS7   A0A2R7W771   A0A2R7WSP7   A0A1B6CSL2   A0A2L2Y3Y7   A0A2L2Y4F2   A0A087U2Q4   A0A158P4Q1   A0A158P4S6   A0A158P5I9   L7MCS8   L7MA76   A0A0C9RXL6   A0A388K567   A0A090XDG5   A0A1E1XL52   L7LW12   L7LW11   L7LYQ9   A0A388KWR7   A0A1E1XKD7   L7LV95   L7ML53   L7LY95   A0A1E1X293   A0A388LMS8   L7LYP4   A0A388MA01   A0A147BMC5   L7MFA7   A0A388JJI1   A0A388KXH3   A0A1Y1KJI2   L7MAW1   A0A388KWG6   L7MBZ6   L7LV55   A0A388K9A8   A0A388KQG1   A0A388L150   A0A388LDS5   A0A388LN87   A0A388KQM9   L7MML3   L7LVQ9   A0A2R5L8F2   A0A388JUK0   A0A388KZE6   A0A388L2E3   A0A388M7C9   A0A2R5LEZ4   A0A388KIW5   A0A1Y1KFN9   A0A1Y1KFM9   A0A2R5LP11   A0A147BJI2   L7ML73   A0A388KSU5   A0A388L5S1   A0A034VPR8   A0A147BAZ1   A0A139WIQ0   L7LWL7   A0A131XNQ4   A0A139WJA1   A0A147BIK4   A0A388K1C8   A0A388JV64   A0A355ABF2  

PDB

4OL8     E-value=1.46448e-70,     Score=680

KEGG

101736213    no KO assigned | (RefSeq) sphingomyelin phosphodiesterase 4-like

GO

GO:0003676   GO:0015074   GO:0006313   GO:0003677   GO:0004190   GO:0005634   GO:0016021   GO:0008270   GO:0003924   GO:0000930   GO:0031122   GO:0005874   GO:0007020   GO:0005525  

PANTHER

PTHR11588  

Subcellular location

Nucleus  

Length:

807

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0095

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00011

outside

1  -  807

 

 

Pi

13.168701

Theta

23.374272

Tajima's D

-1.03803

CLR

57.554658

CSRT

0.131293435328234

Interpretation

Uncertain