Gene

KWMTBOMO02325  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003788

Annotation

PREDICTED:_long-chain-fatty-acid--CoA_ligase_4_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(+):17822952-17867474      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.459 Mitochondrial   Reliability : 1.876

CDS

ATGTTCATAGACGAAAACGAAACGCCCGACTCATGGTGGGTGTCGGCGGTGCTAAGGACCATACGGACCGTCGCGTTTGTCTTCGACGTCATCACGTTCCCGATCCACCTCCTCGTCCAGAGACCTTGGAGGAAACGTGCCTTGTCAAGAAGAATAAAGGCTCGTATAATAAGCAGTACCGAGAACAGCATAACGATTAGTCCGCTAACGCCACCCTGCGACCTACACCTGCGTCTGGTCCGCGATGGCGTCACCACCATGGAGGGCATGCTCCGCGCCGCCACCCAGCGCTGGGGGCAGCGGCCCTGTCTGGGGACGCGCGCCGTGCTCAGCGAGGAGGACGAACCGCAACCAAACGGACGAGTCTTTAAGAAGTTCAAAATGGGCGAGTACATATGGCGGACGTACGCGGACGTAGAGCGTGAGGCGCGAGAGTTCGGCGCGGGGCTGCGCGCGGTGGGCTGCGAACCGCGGCGCAACGTCGTCATTTTCGCAGAGACGCGCGCCGAGTGGATGCTCGCCGCGCACGGCTGCTTCACGCAGAGCATCCCCGTTGTCACAATCTATGCCACACTGGGAGACGAAGCTATCGCTCACGGCATCAACGAGACCGAAGTGTCCACGGTCATCACCACGCACGATCTCCTGCCCAAGTTCAAGAAGATTCTCGCGAAGACGCCCAAAGTGGAGACCATCATCTACATGGAGGACCAGCTCAAGCCGACCGACACGCAGGGCTTCAAGGAGGGAATCAAGATCGTGAGCTACAAGAATGTCGTGGAACTCGGCAGGGAGTCTAAGATCGAGAGCGTGCGGCCCGGCGCGGCGGACACGGCCATCATCATGTACACGTCGGGCTCCACGGGCGTGCCCAAGGGCGTGCTGCTGTCGCACCGCAACATGCTGGCCACGCTCAAGGCCTTCGCCGACGCCATCCCCATCTACGAGGGCGACGTGCTCATGGGCTTCCTGCCGCTGGCGCACGTGTTCGAGCTGCTCGCCGAGAACCTCTGCATCATCGGAGGCGTGCCCATCGGCTACTCCACTCCGCTGACGATGCTGGACTCGTCCAGCAAGATCATGAAGGGGACGAAGGGCGACGCCACCACGCTGAGGCCGACCTGCATCACCACCGTGCCGTTGATAATGGACCGCATCAGCAAGGGCATCACGGACAAGGTGAGTCGCAGCGGGGAGCTGGCCGCCGCCGTGTTCAAGTGGAGCTACAGCTACAAGCAGACCTGGATGCGGCGCGGCTACGACACGCCCGTGCTGGACTACCTGATATTCCGCAAAGTGGGCGGGCTGCTGGGCGGCCGCGTGCGCCTCATGATCTCGGGCGGCGCGCCCCTGTCGCCTGACACACACCTACAGGTGAAGATCTGCCTGTGCTGCTCCGTGGTGGCGGGCTACGGGCTCACGGAGACCACGTCGTGCGGCACCGTCATGGACCCGCACGACCGCTCCACGGGCCGCGTGGGCGCCCCGGCCGCCGGCGCGCTGCTGGCGCTGCGGGACTGGGACGAGGGCAACTACCGCGTCACCAACAAGCCGCACCCGCAGGGCGAGATCATAATCGGCGGTGACTGCGTCGCCGAGGGGTACTACAAGAACCCGCAGAAGACGAAGGAGGAATTCATCGACGCCGAGGGGAGACGCTGGTTCAAATCCGGAGATATCGGGGAGCTGCATGACGATGGATGTATTAAGATTATTGACCGCAAGAAGGACCTGGTGAAGCTGCAGGCCGGCGAGTACGTGTCGCTGGGCAAGGTGGAGGCCGAGCTGAAGACGTGCCCCATCGTGGAGAACATCTGCGTGTACGGCGACAGCAGCAAGTCGCACACCGTGGCGCTGGTCGTGCCCAACGCGCCGCGCCTGGCCGCGCTCGCCCAGCGCCTGCAGCTGCCCGCGGGCGCCGACCCCCCCGCGCTGTACGCGCAGCCCGCGCTGGAGCGCGCCGTGCTGGCCGAGCTGGCCGAGCACGCGCGCAAGTGCGGCCTCGAGAAGTTCGAGGTGCCCGCCGCCGTCAAGCTGTGCACCGAGGTCTGGTCGCCCGACATGGGGCTGGTCACCGCCGCCTTCAAGATCAAGCGCAAGGACATCCAGGAGCGGTACAAGGAGGACATCAAGCGGATGTACGCGTCCTGA

Protein

MFIDENETPDSWWVSAVLRTIRTVAFVFDVITFPIHLLVQRPWRKRALSRRIKARIISSTENSITISPLTPPCDLHLRLVRDGVTTMEGMLRAATQRWGQRPCLGTRAVLSEEDEPQPNGRVFKKFKMGEYIWRTYADVEREAREFGAGLRAVGCEPRRNVVIFAETRAEWMLAAHGCFTQSIPVVTIYATLGDEAIAHGINETEVSTVITTHDLLPKFKKILAKTPKVETIIYMEDQLKPTDTQGFKEGIKIVSYKNVVELGRESKIESVRPGAADTAIIMYTSGSTGVPKGVLLSHRNMLATLKAFADAIPIYEGDVLMGFLPLAHVFELLAENLCIIGGVPIGYSTPLTMLDSSSKIMKGTKGDATTLRPTCITTVPLIMDRISKGITDKVSRSGELAAAVFKWSYSYKQTWMRRGYDTPVLDYLIFRKVGGLLGGRVRLMISGGAPLSPDTHLQVKICLCCSVVAGYGLTETTSCGTVMDPHDRSTGRVGAPAAGALLALRDWDEGNYRVTNKPHPQGEIIIGGDCVAEGYYKNPQKTKEEFIDAEGRRWFKSGDIGELHDDGCIKIIDRKKDLVKLQAGEYVSLGKVEAELKTCPIVENICVYGDSSKSHTVALVVPNAPRLAALAQRLQLPAGADPPALYAQPALERAVLAELAEHARKCGLEKFEVPAAVKLCTEVWSPDMGLVTAAFKIKRKDIQERYKEDIKRMYAS

Uniprot

H9J2Q1   A0A194QQ38   A0A2A4K1U3   A0A1A9Z1V8   E2AYR1   A0A1A9V1L5   + More
A0A069DWY9   A0A1A9YD05   A0A1B0C0T5   A0A1Y1MN63   A0A224XJI1   T1PFX0   A0A1I8NID3   A0A158NCE8   D3TR21   A0A151WMR0   A0A1B6E8J8   E2BBW6   A0A0L0BR37   A0A3L8DHP9   Q28Y67   A0A1Y1MFT9   A0A151JQZ1   A0A1B0F9R3   A0A195FAH7   A0A151ICB8   A0A026X1X7   T1I0F4   A0A034W989   A0A0K8U4E7   A0A1L8DZ15   A0A2J7QBQ0   A0A2J7QBN9   A0A0P4W361   A0A3B0J0R5   A0A1A9W3R7   W8B3H8   A0A0J7L6J6   B4MPM8   A0A0Q9WG92   A0A067QQW2   A0A0M4EAA3   A0A0K8TNA5   A0A034W7L0   A0A195BY92   B4GGL7   A0A0A1XED0   B4KMY4   A0A0R3NUJ0   A0A1L8DZ12   A0A3B0JT50   E9INK5   W8BQ32   A0A1L8DYX3   A0A0Q9W451   A0A182WVN2   A0A2C9GMU5   F5HLC1   A0A0L7RG48   E0VY58   A0A1W4WKU7   F4WWY9   A0A182UUS7   A0A0Q9XJC4   N6WCC2   A0A0A1XHW8   A0A0A1XNL1   B4LNB5   A0A1Y1MI90   A0A1Q3FY57   A0A2C9H6R6   A0A1Q3FY73   F5HLC2   A0A182I9B2   A0A182UG18   A0A2C9H6R4   A0A3B0JLD2   A0A2C9GN04   A0A182KXP0   Q7QAM6   A0A154PPC9   A0A182KEN9   A0A0N0U4J8   A0A2M4BFK7   A0A0R1DRJ7   A0A182MGC3   A0A182QJK3   A0A2M4A346   A0A1Q3G3M4   A0A2M3Z0L9   A0A182REW1   A0A182P901   A0A0Q5WKV4   Q8T3L1   A0A1S4FRU9   B4QG64   W5JAD8   A0A023EXN4   A0A139WH95   A0A084VW14  

Pubmed

19121390    26354079    20798317    26334808    28004739    25315136    + More
21347285    20353571    26108605    30249741    15632085    17994087    24508170    25348373    27129103    24495485    18057021    24845553    26369729    25830018    23185243    21282665    12364791    14747013    17210077    20566863    21719571    20966253    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    20920257    23761445    24945155    18362917    19820115    24438588   

EMBL

BABH01034503    BABH01034504    BABH01034505    BABH01034506    BABH01034507    KQ461191    + More
KPJ07080.1    NWSH01000225    PCG78235.1    GL443983    EFN61424.1    GBGD01000667    JAC88222.1    JXJN01023749    JXJN01023750    GEZM01032304    JAV84677.1    GFTR01007806    JAW08620.1    KA647569    AFP62198.1    ADTU01011838    EZ423873    ADD20149.1    KQ982934    KYQ49159.1    GEDC01029969    GEDC01003038    JAS07329.1    JAS34260.1    GL447175    EFN86790.1    JRES01001589    KNC21699.1    QOIP01000008    RLU19683.1    CM000071    EAL26098.3    GEZM01032302    JAV84679.1    KQ978619    KYN29777.1    CCAG010011069    CCAG010011070    KQ981727    KYN37049.1    KQ978076    KYM97216.1    KK107034    EZA62068.1    ACPB03006604    KT328602    ALT07199.1    GAKP01008282    GAKP01008281    GAKP01008277    GAKP01008272    GAKP01008270    GAKP01008268    JAC50680.1    GDHF01033727    GDHF01030886    GDHF01021668    JAI18587.1    JAI21428.1    JAI30646.1    GFDF01002400    JAV11684.1    NEVH01016296    PNF25998.1    PNF25996.1    GDKW01000673    JAI55922.1    OUUW01000001    SPP74307.1    GAMC01014952    GAMC01014949    JAB91603.1    LBMM01000501    KMQ98198.1    CH963849    EDW74067.1    CH940648    KRF79749.1    KRF79750.1    KK853129    KDR10971.1    CP012524    ALC41958.1    GDAI01001749    JAI15854.1    GAKP01008274    GAKP01008273    GAKP01008269    JAC50679.1    KQ976396    KYM92906.1    CH479183    EDW35637.1    GBXI01005454    GBXI01005112    JAD08838.1    JAD09180.1    CH933808    EDW09906.1    KRT02844.1    KRT02845.1    GFDF01002427    JAV11657.1    SPP74308.1    GL764306    EFZ17862.1    GAMC01014951    JAB91604.1    GFDF01002426    JAV11658.1    KRF79751.1    KRF79752.1    APCN01003249    APCN01003250    AAAB01008888    EGK97083.1    KQ414598    KOC69808.1    DS235843    EEB18314.1    GL888417    EGI61232.1    KRG04974.1    KRG04975.1    ENO01794.2    KRT02842.1    KRT02843.1    GBXI01003782    JAD10510.1    GBXI01001696    JAD12596.1    EDW61067.1    GEZM01032303    JAV84678.1    GFDL01002558    JAV32487.1    GFDL01002559    JAV32486.1    EGK97082.1    SPP74309.1    EAA08767.2    KQ435007    KZC13597.1    KQ435830    KOX71758.1    GGFJ01002683    MBW51824.1    CM000157    KRJ98370.1    KRJ98379.1    AXCM01007567    AXCN02000282    GGFK01001912    MBW35233.1    GFDL01000654    JAV34391.1    GGFM01001326    MBW22077.1    CH954177    KQS70862.1    AE013599    AY094958    AAF59061.2    AAG22300.2    AAM11311.1    AAX52718.1    AAX52719.1    CM000362    CM002911    EDX06214.1    KMY92296.1    ADMH02002036    ETN59825.1    GAPW01000354    JAC13244.1    KQ971343    KYB27254.1    ATLV01017372    KE525164    KFB42158.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000092445    UP000000311    UP000078200    + More
UP000092443    UP000092460    UP000095301    UP000005205    UP000075809    UP000008237    UP000037069    UP000279307    UP000001819    UP000078492    UP000092444    UP000078541    UP000078542    UP000053097    UP000015103    UP000235965    UP000268350    UP000091820    UP000036403    UP000007798    UP000008792    UP000027135    UP000092553    UP000078540    UP000008744    UP000009192    UP000076407    UP000075840    UP000007062    UP000053825    UP000009046    UP000192223    UP000007755    UP000075903    UP000075902    UP000075882    UP000076502    UP000075881    UP000053105    UP000002282    UP000075883    UP000075886    UP000075900    UP000075885    UP000008711    UP000000803    UP000000304    UP000000673    UP000007266    UP000030765   

PRIDE

H9J2Q1    Q8T3L1   

Pfam

PF00501   AMP-binding        + More
PF13193   AMP-binding_C

Interpro

IPR042099   AMP-dep_Synthh-like_sf        + More
IPR000873   AMP-dep_Synth/Lig       
IPR020845   AMP-binding_CS       
IPR025110   AMP-bd_C       

Gene 3D

3.40.50.12780    

ProteinModelPortal

H9J2Q1   A0A194QQ38   A0A2A4K1U3   A0A1A9Z1V8   E2AYR1   A0A1A9V1L5   + More
A0A069DWY9   A0A1A9YD05   A0A1B0C0T5   A0A1Y1MN63   A0A224XJI1   T1PFX0   A0A1I8NID3   A0A158NCE8   D3TR21   A0A151WMR0   A0A1B6E8J8   E2BBW6   A0A0L0BR37   A0A3L8DHP9   Q28Y67   A0A1Y1MFT9   A0A151JQZ1   A0A1B0F9R3   A0A195FAH7   A0A151ICB8   A0A026X1X7   T1I0F4   A0A034W989   A0A0K8U4E7   A0A1L8DZ15   A0A2J7QBQ0   A0A2J7QBN9   A0A0P4W361   A0A3B0J0R5   A0A1A9W3R7   W8B3H8   A0A0J7L6J6   B4MPM8   A0A0Q9WG92   A0A067QQW2   A0A0M4EAA3   A0A0K8TNA5   A0A034W7L0   A0A195BY92   B4GGL7   A0A0A1XED0   B4KMY4   A0A0R3NUJ0   A0A1L8DZ12   A0A3B0JT50   E9INK5   W8BQ32   A0A1L8DYX3   A0A0Q9W451   A0A182WVN2   A0A2C9GMU5   F5HLC1   A0A0L7RG48   E0VY58   A0A1W4WKU7   F4WWY9   A0A182UUS7   A0A0Q9XJC4   N6WCC2   A0A0A1XHW8   A0A0A1XNL1   B4LNB5   A0A1Y1MI90   A0A1Q3FY57   A0A2C9H6R6   A0A1Q3FY73   F5HLC2   A0A182I9B2   A0A182UG18   A0A2C9H6R4   A0A3B0JLD2   A0A2C9GN04   A0A182KXP0   Q7QAM6   A0A154PPC9   A0A182KEN9   A0A0N0U4J8   A0A2M4BFK7   A0A0R1DRJ7   A0A182MGC3   A0A182QJK3   A0A2M4A346   A0A1Q3G3M4   A0A2M3Z0L9   A0A182REW1   A0A182P901   A0A0Q5WKV4   Q8T3L1   A0A1S4FRU9   B4QG64   W5JAD8   A0A023EXN4   A0A139WH95   A0A084VW14  

PDB

5MSW     E-value=3.25214e-28,     Score=314

KEGG

101738882    K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] | (RefSeq) long-chain-fatty-acid--CoA ligase 4

PATHWAY

00061    Fatty acid biosynthesis - Bombyx mori (domestic silkworm)
00071    Fatty acid degradation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)
04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0003824   GO:0016874   GO:0102391   GO:0004467   GO:0003996   GO:0010890   GO:0005783   GO:0007411   GO:0035282   GO:0006655   GO:0005777   GO:0030424   GO:0045886   GO:0061502   GO:0030514   GO:0035338   GO:0007268   GO:0005829   GO:0090433   GO:0016021   GO:0005737   GO:0001676   GO:0007399   GO:0008152   GO:0005891   GO:0003676   GO:0008017   GO:0005634   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

Length:

716

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.62185000000001

Exp number, first 60 AAs:

7.52447

Total prob of N-in:

0.30835

outside

1  -  716

 

 

Pi

21.592784

Theta

17.072839

Tajima's D

-2.113263

CLR

190.560626

CSRT

0.00874956252187391

Interpretation

Possibly Positive selection