SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02314
Pre Gene Modal
BGIBMGA013783
Annotation
AF461149_1_transposase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.234
 

Sequence

CDS
ATGGAGTGGACGCTTAAAGAAGACCGTGTTGCAGTTATTGCGTTGCATCGTTGCGGTTACGCGCCAATTCAAATTTTTAACATACTGAAAAATTTGAATATAACCAAAAGATTCGTTTATCGTACCATCAAACGATACAATGAAGACTCTAGTGTAGATGACAGGTCAAGAAGTGGTCACCCTCGGTCTGTTAGAACTCCAGGAGTGATAAAAGCTGTGAAGGCGCGAATTCAAAGAAATCCCAAACGTAAGCAGAAACTGTTGGCCCTTCAGATGGGGTTAAGCAGAACCACGGTGAAAAGGGTGTTAAATGAAGACTTAGGGCTTCGGGCATATCGAAGAAAAACAGGACATCGTTTGAATGCTCGTCTAATGGACCTGAGACTGAAGAGATGCCGCGCTTTGTTAAAGCGGTACGCGGGAAAAAAATATCGGGAAATTCTTTTTTCGGATGAAAAAATTTTTACCGTAGAAGAGAGCTACAACAAACAAAATGATAAGGTGTACGCACACAGTAGTGAAGAAGCGAGCAACCGTATTCCGCGTGTCCAACGAGATCATTTTCCATCCTCGCTCATGGTATGGTTGGGAGTTTCTTATTGGGGCTTAACAGAGGTACATTTTTGTGAGAAAGGTGTAAAAACGAATGCAGTTGTGTATCAAAATACAGTCCTAACGAACCTTGTGGAACCTGTTTCTCATATCATGTTCAATAACAGGCACTGGGTATTCCAACAAGATTCGGCGCCAGCTCATAGAGCGAAGAGCACACAAGACTGGCTGGCGGCGCGTGAAATCGACTTCATCCGGCACGAAGACTGGTCCTCCTCCAGTCCAGATTTGAATCCGTTAGATTACAAGATATGA
Protein
MEWTLKEDRVAVIALHRCGYAPIQIFNILKNLNITKRFVYRTIKRYNEDSSVDDRSRSGHPRSVRTPGVIKAVKARIQRNPKRKQKLLALQMGLSRTTVKRVLNEDLGLRAYRRKTGHRLNARLMDLRLKRCRALLKRYAGKKYREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRIPRVQRDHFPSSLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHIMFNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWSSSSPDLNPLDYKI

Summary

EMBL
AF461149    AAN06610.1    AB363028    BAG15927.1    AB363006    AB363010    + More
AB363014    BAG15923.1    BAG15924.1    AB363018    BAG15926.1    AB473770    BAH20555.1    U47917    AAB47739.1    JF779677    AEO90418.1    GGMS01016485    MBY85688.1    LNIX01000030    OXA41211.1    JARK01000176    EYC41234.1    JARK01001345    EYC27589.1    UYSL01019905    VDL71189.1    CAVP010059404    CDL95787.1    KX931010    APL98300.1    JARK01000059    EYC44525.1    PDUG01000005    PIC23776.1    UZAH01027257    VDO90094.1    UZAH01029309    VDP05368.1    JARK01001411    EYC06502.1    DS268612    EFO94085.1    DS268492    EFP11689.1    DS268747    EFP00909.1    JARK01000255    EYC39473.1    DS268508    EFO83264.1    DS268421    EFO88618.1    DS268673    EFO98001.1    PIC28734.1    DS268525    EFO85497.1    DS268466    EFP06959.1    PDUG01000006    PIC20538.1    DS268545    EFO88382.1    PDUG01000001    PIC51673.1    PDUG01000004    PIC32571.1    JARK01001658    EYB84158.1    PIC32570.1    JARK01001337    EYC34439.1    LNIX01000012    OXA47934.1    PDUG01000012    PIC13506.1    UYSL01020440    VDL74616.1    DS268679    EFO98285.1    PIC29926.1    HAAD01005865    CDG72097.1    DS268606    EFO93488.1    DS268428    EFO94379.1    JOJR01000015    RCN51257.1    PIC53815.1    JARK01001418    EYC05478.1    HE601047    HE600964    CAS00660.1    CAS01013.1    PIC19070.1    PDUG01000002    PIC49353.1    HE601437    CAR99651.1    HE601507    CAR99239.1    HE601413    CAS00487.1    CAS00634.1    PIC24955.1    HE600938    CAR99786.1   
Pfam
PF13358   DDE_3        + More
PF00292   PAX
PF00250   Forkhead
PF10320   7TM_GPCR_Srsx
PF18397   IKBKB_SDD
PF00069   Pkinase
PF13936   HTH_38
Interpro
IPR009057   Homeobox-like_sf        + More
IPR036388   WH-like_DNA-bd_sf       
IPR038717   Tc1-like_DDE_dom       
IPR001523   Paired_dom       
IPR036390   WH_DNA-bd_sf       
IPR001766   Fork_head_dom       
IPR030456   TF_fork_head_CS_2       
IPR017452   GPCR_Rhodpsn_7TM       
IPR000276   GPCR_Rhodpsn       
IPR019424   7TM_GPCR_Srsx       
IPR011009   Kinase-like_dom_sf       
IPR041185   IKBKB_SDD       
IPR029071   Ubiquitin-like_domsf       
IPR000719   Prot_kinase_dom       
IPR000792   Tscrpt_reg_LuxR_C       
IPR025246   IS30-like_HTH       
SUPFAM
SSF46689   SSF46689        + More
SSF46785   SSF46785       
SSF56112   SSF56112       
SSF54236   SSF54236       
Gene 3D
PDB
5CR4     E-value=5.771e-07,     Score=126

Ontologies

Topology

Subcellular location
Nucleus  
Length:
288
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.975699999999999
Exp number, first 60 AAs:
0.85439
Total prob of N-in:
0.07538
outside
1  -  288
 
 

Population Genetic Test Statistics

Pi
166.074616
Theta
16.967764
Tajima's D
0.04466
CLR
15.189872
CSRT
0.379431028448578
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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