Silkworm Genome Informatics Database

Gene

KWMTBOMO02313

Pre Gene Modal

BGIBMGA001398

Annotation

PREDICTED:_uncharacterized_protein_LOC105389720_[Plutella_xylostella]

Location

Bomo_Chr4(-):17526192-17530684 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.258

CDS

ATGACGACCCGCATTTTAAAATGTAGTAATTGCAACATCGTGATTTGTGAAGTGCTTGCTGTCATACAAAATAAAATAGATGTGATGAGTGAAGACAGTTTGGTGCGTATATGTTCAACGTCTTTCTCCGTGGAAGAAATTGAAAATGCTAAAAGCCTTTTGTTTGAATCTGTGACGACTTCAAAACGAAAGAGAACACGTAGAAGGGAAGGCCGAATGCATCGCGATCTTTTTGATGTTATCAGTCTTTTTAAAGAAACTGACCCGGAATTAACTCCAACTTTTGTGGCTAGAGATTTGCAAAAGTTACCGCCTGTACATTTTGATCATCTCGACGCGACTAAGCTTTTAAAAGACATACTCGTCATCCAAAAGAAGATACAAACAATTAAGGAATCATATGTAACGGAGGATAATTTAAATGAAATAAAAAATGAACTTTATAATCTGAAAAGTGCATCTTTAGTGAATAATAACTTCGATATACATAACACCGAGGGTCACATTAATACAAAGAGAGGCGGGGGTATACTAACGAATAGTTATTACTTAGACAGTAGCCCGATCGAGCCACCTTATTGTTCACACGCGGAGGTAAGCATTGCAAATCATGAGCATGAGCGCTCCTCCGCCACCGCCACGGCCGCCGCCACTGGCCTCGATACTGGCGATCGGCGCGTGGAGTTCGTCGTCGGAAACTTCAGTACTGCGGCTTTGAACGGGAATACGTTTGCGCCTGCGCAGACGGTGGACCCCGCTGCAGAACGCGGCTCGTGCATGCAATACTCGCATAAGGCGGCATCTACGCCAGAGCCGAATGGCGTCGGTTCGACAAATAAGTTGTTGGCGAAGGTTGTAACTGCAGAAGGAGAATGGAAGGCTGAGGAACCGAACGAACAGTGGATTTTGGCACAGCGAAAGAGATATAGAAACCGATTTAGTACTGTGGAGGGCAAGGCGCGTAATAGTGCAGATCAGAAATTTAAAGCGGCAGATATTCGCGTGCCTTTGTTTGTCAATAATGTTGACAAGACTACATCAGAAAATGACATTGTAGATTATATTTATAACAAAACGCAAGTTCGTGTCATCTTACACAAAATAAAATCTAAAGTACCGAGGCAGTACAGCGCATATAAAATGCTTGTACCTAATGCGAAATTAACGCTGTTTCTAGACAACGCCTTATGGCCAGAAGGAGTGGCTGATTTCGCATACATCGGAAAATCTTCAGTGGACGTTACAGCCGGACCACTGAAGGGTCGAAGCCACGGTGGACTTGGAATTTTATGGCGTAGAAATATTTTTCACGCGGTATCGGTGATTGACTGTGTAAACTCACGTATTGCGGCAGTTAAAGTGGCTCTTGATGAACGTGAGTTTCTTGTTTTTTCTGTTTATATGCCGACGGACAGCGCGAATAATCTAGACGAGTTCATAGACTGCCTTGCAGAGATAAATGCTGTTATAGAAACTTGTAGTGTAGATTCTGCGTATATACTGGGTGATTTTAACGCACACCCGGGTTCACTGTTTGGTACGGAACTTCTTGACTTTTGTGTTGAACAAAAATGGACATGCGTTGACGTGGAACGTTTGGGTGTACTTTCAAATTCATACACTTATTTGAGTGACGCGTGGGGAACTACGTCATGGTTAGACCACATAATCACGACTGAGGTCGCTACAAAAAGCGTTAGCAGCGTAAATATAAGATACGAAGTATCGTGGTCTGATCATTTCGCGGTCGAATTGATCTGTGATCTTCAAGTTTTAGTGCCCAAGTTTGTACAACAAGGCTATGTGCCTGATAGTGCTACTTGGGGTGATAGAGATAGGGCCCAGATTAATCAATATTGGGAAGTTTGTTCGGCTAATTTGCGAGATATAGATTTTCCAAACGATATGCAAAAGTGTGGAGATATAGTTTGTAATAACTTAGAACATAGACTGATTATCGATAAAATGTACGATAAAATAGTAAGCACACTTCGTAGTTCTGCTGCGGAATGTTCCACAAGTTATAATTTGAAGCGCAGACGTAAGAGAAATATGTATGTTATGGGTTGGAACAAACATTGTAAAGATGCACATAGGGAGGCTCGGCTTCGATTTCATAATTGGATCGCTCTTGGAAAACCGAAATCTGGTCACGCGTATCAGCAAATGCGGGAAGCACGGAGAACTTTTAAAGACAAAGTAAAGTGGTGCAAAAAGAACCAGACTCAAATTAAAATGGATATACTTGCTACACAACATTCAGCAAAAGATTTTTCGAAATTTTGGAAGGAAACAAATAAGTTGAATCCGAAGCCGAGTGTTCCAGGGAGCGTTGAGGGTATAAGCGACTCCGGTCAGATTGCCAATGCATTTAGGGAACATTTTAGAGTGAAGTCTCCATTGGTAACAGCGAATGCTGGTGCGAGTGATATTCGGCTTGGGGAACCAATTACGCGAATCACGGCGAAACAGGTTGCACGGGTGGTGAGTGACATGAAGCGAGGAAAATCGCCTGGTCATGACTCATTGAGTATTGAGCATCTACAATACGCAGGTGTTCACTTGCCCAGAGTGCTTGCCATGTTGTTCACTTTCTGTGTAGGCCATTCATATTTGCCTAAAGCGATGATGAAGACCGTAGTTGTTCCGATAGTTAAGAATAAAACCGGGGATGTATCCAGTTTAGGTAACTACAGACCTATATCACTCGCAACAGTCATCGCTAAAGTACTGGATGGTATAATTGATATTCAGTTACGAAGACACGTAAAGCTGCATGATGCCCAGTTCGGCTTTCGACCTGGACTCTCGACTGAAACGGCCATACTGAATCTCAAGCATACCGTCCAGTACTACACAGACAGAGGCACTCCTGTATACGCCTGTTTTTTAGACTTATCCAAAGCGTTTGATCTGGTGGCGTATGACAGGTTGTGGCATAAGTTGTCGAATGATACAGACTTGCCTCATGAGTTTGTTTCTCTCTTGAGATACTGGTATGGTAATCAGAGCAACTTTGTGAAGTGGTCGGGGTCGCAGTCGGATATGTATAGGCTGGATTGTGGGGTAAGACAGGGTGGCTTGTCATCGCCAAGCCTTTTTAACCTATACATTGACCGCCTGATTCGTGGGCTCAGCAATTCCAATGTCGGATGTTCCATTGATGGTGTGTGTGTTAATAATATCAGTTATGCTGACGACATGGTGTTGCTGAGCCCATCGATCAGGGCTCTCAGAAAGCTGATTAGGATATGCGAGTGTTATGCGGAGGAACATGGGCTCAGATATAATGCCGTAAAAAGCGAACTGATGGTATTTAAATCAGGCAGAAAAACCTACGAAACTGTCCCATCAGTCATACTCAACGGCAGTGTCCTTAAACAAGTATCACAATTCAAGTATCTGGGTCACTGGGTCACTGAGACGCTTGCAGACGATGTAGACATGGACAGGGAGCGCAGGGCGTTGTCAATCAGGGGTAATATGCTGGCCCGTAGGTTCGCGCGGTGTACTGCAGAGGTGAAAGCTACTCTTTTTAGAGCATACTGCCAGTCTTTCTACACGTGCAGCCTATGGGTTAAGTATACCAAGAAATCTTACAGCACTCTGCGTGTCCAGTATAATAACGCTTTCAGAGCGCTGATGTGGCTGCCGCGTCACTGCGTCCGAGATTAG

Protein

MTTRILKCSNCNIVICEVLAVIQNKIDVMSEDSLVRICSTSFSVEEIENAKSLLFESVTTSKRKRTRRREGRMHRDLFDVISLFKETDPELTPTFVARDLQKLPPVHFDHLDATKLLKDILVIQKKIQTIKESYVTEDNLNEIKNELYNLKSASLVNNNFDIHNTEGHINTKRGGGILTNSYYLDSSPIEPPYCSHAEVSIANHEHERSSATATAAATGLDTGDRRVEFVVGNFSTAALNGNTFAPAQTVDPAAERGSCMQYSHKAASTPEPNGVGSTNKLLAKVVTAEGEWKAEEPNEQWILAQRKRYRNRFSTVEGKARNSADQKFKAADIRVPLFVNNVDKTTSENDIVDYIYNKTQVRVILHKIKSKVPRQYSAYKMLVPNAKLTLFLDNALWPEGVADFAYIGKSSVDVTAGPLKGRSHGGLGILWRRNIFHAVSVIDCVNSRIAAVKVALDEREFLVFSVYMPTDSANNLDEFIDCLAEINAVIETCSVDSAYILGDFNAHPGSLFGTELLDFCVEQKWTCVDVERLGVLSNSYTYLSDAWGTTSWLDHIITTEVATKSVSSVNIRYEVSWSDHFAVELICDLQVLVPKFVQQGYVPDSATWGDRDRAQINQYWEVCSANLRDIDFPNDMQKCGDIVCNNLEHRLIIDKMYDKIVSTLRSSAAECSTSYNLKRRRKRNMYVMGWNKHCKDAHREARLRFHNWIALGKPKSGHAYQQMREARRTFKDKVKWCKKNQTQIKMDILATQHSAKDFSKFWKETNKLNPKPSVPGSVEGISDSGQIANAFREHFRVKSPLVTANAGASDIRLGEPITRITAKQVARVVSDMKRGKSPGHDSLSIEHLQYAGVHLPRVLAMLFTFCVGHSYLPKAMMKTVVVPIVKNKTGDVSSLGNYRPISLATVIAKVLDGIIDIQLRRHVKLHDAQFGFRPGLSTETAILNLKHTVQYYTDRGTPVYACFLDLSKAFDLVAYDRLWHKLSNDTDLPHEFVSLLRYWYGNQSNFVKWSGSQSDMYRLDCGVRQGGLSSPSLFNLYIDRLIRGLSNSNVGCSIDGVCVNNISYADDMVLLSPSIRALRKLIRICECYAEEHGLRYNAVKSELMVFKSGRKTYETVPSVILNGSVLKQVSQFKYLGHWVTETLADDVDMDRERRALSIRGNMLARRFARCTAEVKATLFRAYCQSFYTCSLWVKYTKKSYSTLRVQYNNAFRALMWLPRHCVRD

Uniprot

A0A3C1S1R4

Pubmed

30148503

EMBL

DMQF01000358 HAO15222.1

Pfam

PF00078 RVT_1

Interpro

IPR036691 Endo/exonu/phosph_ase_sf + More
IPR000477 RT_dom

SUPFAM

SSF56219 SSF56219

ProteinModelPortal

A0A3C1S1R4

PDB

5HHL E-value=3.0727e-05, Score=118

KEGG

101741404 no KO assigned | (RefSeq) trichohyalin-like

GO

Length:

1224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14916

Exp number, first 60 AAs:

0.02334

Total prob of N-in:

0.00145

outside

1 - 1224

Pi

360.023613

Theta

211.385275

Tajima's D

3.338905

CLR

0.047304

CSRT

0.991250437478126

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree