Gene

KWMTBOMO02305

Pre Gene Modal

BGIBMGA003769

Annotation

PREDICTED:_cilia-_and_flagella-associated_protein_43_[Bombyx_mori]

Location

Bomo_Chr4(-):17272146-17278894      View in EpiBrowser

Full name

Cilia- and flagella-associated protein 43      

Alternative Name

WD repeat-containing protein 96

Location in the cell

Cytoplasmic   Reliability : 1.857 Nuclear   Reliability : 2.531

CDS

ATGCGGCTCTGGTTCAATAATCAGTTCGACGACCTCATGAATCTCAAGAAGAGAGAGATGGCTCTCGTTGAGGACCGAAACTTGAAGCTCCGATTTATCATCGAAGAATTGAATAAGCTGTCAGATCTTAGAGGCAGTTTTCATCATCTGAACATTGAAATTAGAGATCCGGTATGGCGTCAAGAGGAACAACCCGAAAAACTTATTAAAGTCGAACCTGAAGAATGCAGCATTGAACCCTACATCAGCCCCAGTCAAATTGTCATCGTGCCCCCCGATCCTGGCCCTAAAGACGACTTCAAAGATCGAGCCCTAATGGAGATGATGGACGGTGTGCTGGAAAAACTCTGGCATGAGGAAATCAAAAAACCCATTCCAATGCCACAGTGCATGTTGGAAAAAGACCCGGAGCATTTCAACGAGGACGATTTGCGGCTGATGTTCGACTACGAAGCCAAAGTGAAGTTCCGTAACGAAGAAAGAGACAAGTACCGCAAGATGCTGCACGCCGAGTATGCGAAGATTGCACAGCTCCTGAACGAAGGGGTCGTCAAGTTTAACCAGAAGGTGAAGGAGATGTGGCTGACGAAATTAAAAGCGGATTCTGTGATAGGTCAAGAAAACCTCAATTTGATGCGTCTGCGTCGAACTAATCTGGATCGTGTTGAAATGGCCGAGAAACTTGAAGATATGCGGGCACAAATATCTCGCTATGAAGATGAAGTGGAAACCCTCAACCAGGAGTTGCAGTCCATGCAGGATCAGATCACGGACTGTCAGAATACGTACGACAGTTTGGTCGTCAAGGACAAATACTTGGATCGGACCTTCAAGAATCACTTTGCTGATCTTTCTCCAATTATTGTGGACCAGTGCTATAAATTTTTCAAGAAGCGTCCGAAGTGGCAGCAGCGCGCGGCGGCGAGCGCGGGCGTGCTGTACGAGCTGGCAGCGGCCGTGCTGCTCGCGGTGAGGCCGCCGCTCCTGCCGCCCGACTGTCTCGACTACTACAAGGGGGTGGAACAACTAGACCACAGCACCAACATGCCCCCGGTGATGGACGAGGCCTTGTGGGCCCTCATGTGCAAGCTGCGTCGAGCCAAAATCGAAAATGAAATCCGGATGCGTGCAGTGTGCCAGGAGTTGTCGCTGGCGGAGGGCGCGGCGGGGGCGTGGGGCCGCGGGTTGGCGGCGCGGCGCTCGCTGCTGGCGCACACGCACCAGCGCGTGCTGCAGCACAGGAGGGACGTCGAGCTGCTCTCCAGGAACAAAACTGTACAGGTCTGGCATGACTCCGGCCCATCTATCAACTAG

Protein

MRLWFNNQFDDLMNLKKREMALVEDRNLKLRFIIEELNKLSDLRGSFHHLNIEIRDPVWRQEEQPEKLIKVEPEECSIEPYISPSQIVIVPPDPGPKDDFKDRALMEMMDGVLEKLWHEEIKKPIPMPQCMLEKDPEHFNEDDLRLMFDYEAKVKFRNEERDKYRKMLHAEYAKIAQLLNEGVVKFNQKVKEMWLTKLKADSVIGQENLNLMRLRRTNLDRVEMAEKLEDMRAQISRYEDEVETLNQELQSMQDQITDCQNTYDSLVVKDKYLDRTFKNHFADLSPIIVDQCYKFFKKRPKWQQRAAASAGVLYELAAAVLLAVRPPLLPPDCLDYYKGVEQLDHSTNMPPVMDEALWALMCKLRRAKIENEIRMRAVCQELSLAEGAAGAWGRGLAARRSLLAHTHQRVLQHRRDVELLSRNKTVQVWHDSGPSIN

Description

Flagellar protein involved in sperm flagellum axoneme organization and function.

Similarity

Belongs to the CFAP43 family.

Keywords

Alternative splicing   Cell projection   Cilium   Coiled coil   Complete proteome   Cytoplasm   Cytoskeleton   Flagellum   Polymorphism   Reference proteome   Repeat   WD repeat   Differentiation   Spermatogenesis  

Feature

chain  Cilia- and flagella-associated protein 43
splice variant  In isoform 5.
sequence variant  In SPGF19; unknown pathological significance; dbSNP:rs376788209.

Uniprot

H9J2N2   A0A212EMK7   A0A2A4K7D3   A0A194QGX7   A0A2H1V9L3   A0A194QP16   + More
A0A2P8Z2C8   A0A1Y1MNW1   A0A0T6B2N7   A0A139WAR7   E0VIH6   U4U724   N6TFZ2   Q16LL1   W5JS84   A0A182VXG7   A0A1B6KRG4   A0A1B6FHM7   A0A182QQN2   A0A182MQ64   A0A182LCB4   A0A182U3F0   A0A182XE69   A0A182HJ54   A0A182NFS1   A0A182IT06   A0A182FQB9   A0A182XWT8   A0A182R387   A0A1B0CS30   A0A336L9U7   A0A1Q3G5D0   A0A182PAH6   A0A336LYQ2   A0A182UU88   Q7QBI0   A0A182K4I2   A0A154NY98   A0A1B6C203   A0A1B6DYZ3   F4WEF8   A0A1J1IQA7   A0A195C3Y7   A0A3L8DF81   A0A026W1G5   E2AGZ1   A0A0J7NV75   E2AVJ6   A0A195E867   A0A151WHY4   A0A026WC44   A0A087ZX04   E9I8L2   E9IDP2   E2C509   A0A158NFA1   A0A310SPU9   A0A195AVC9   A0A158NDE8   A0A195B4Y8   A0A195EDH4   F4W958   K7J465   A0A151WU77   A0A2A3EM09   F1LN76   A0A232EWE2   U6D9P3   A0A195FA10   A0A151IJA7   A0A1B0EX10   Q8NDM7   A0A195F412   A0A3Q0D0H3   E9Q7R9   E2B325   A0A3Q0D0E9   A0A1U7QAM0   A0A3Q0CZJ9   A0A2C9M1U3   A0A2Y9JCZ6   G1RZF0   L8I5L2   E1BMD1   G3QF26   A0A384BIW3   W5PA43   G1SVP3   A0A3P4QCZ7   D2GXY6   A0A2J8PCR7   H2Q2J6   A0A2R9BZS6  

Pubmed

19121390    22118469    26354079    29403074    28004739    18362917    + More
19820115    20566863    23537049    17510324    20920257    23761445    20966253    25244985    12364791    14747013    17210077    21719571    30249741    24508170    20798317    21282665    21347285    20075255    15057822    28648823    11230166    14702039    15164054    15489334    25676728    28552195    29449551    19468303    21183079    15562597    22751099    19393038    22398555    20809919    21993624    20010809    16136131    22722832   

EMBL

BABH01034449    BABH01034450    BABH01034451    AGBW02013812    OWR42725.1    NWSH01000050    + More
PCG80185.1    KQ458860    KPJ04762.1    ODYU01001200    SOQ37092.1    KQ461191    KPJ07094.1    PYGN01000227    PSN50662.1    GEZM01027398    JAV86758.1    LJIG01016096    KRT81628.1    KQ971380    KYB25024.1    DS235199    EEB13182.1    KB631815    ERL86396.1    APGK01029191    KB740727    ENN79309.1    CH477902    EAT35198.1    ADMH02000324    ETN66971.1    GEBQ01025950    JAT14027.1    GECZ01020079    JAS49690.1    AXCN02000243    AXCM01002045    APCN01002125    AJWK01025591    AJWK01025592    AJWK01025593    AJWK01025594    AJWK01025595    AJWK01025596    AJWK01025597    AJWK01025598    AJWK01025599    UFQS01002716    UFQT01002716    SSX14586.1    SSX33984.1    GFDL01000040    JAV35005.1    UFQT01000294    SSX22930.1    AAAB01008879    EAA08490.5    KQ434772    KZC03850.1    GEDC01029745    JAS07553.1    GEDC01006405    JAS30893.1    GL888103    EGI67321.1    CVRI01000057    CRL02421.1    KQ978287    KYM95574.1    QOIP01000009    RLU19044.1    KK107519    EZA49426.1    GL439434    EFN67306.1    LBMM01001446    KMQ96295.1    GL443122    EFN62547.1    KQ979479    KYN21398.1    KQ983106    KYQ47442.1    KK107293    QOIP01000005    EZA53241.1    RLU22279.1    GL761587    EFZ23091.1    GL762454    EFZ21508.1    GL452712    EFN76990.1    ADTU01013846    KQ761502    OAD57469.1    KQ976736    KYM75980.1    ADTU01000981    ADTU01000982    ADTU01000983    KQ976598    KYM79561.1    KQ979039    KYN23275.1    GL888002    EGI69240.1    AAZX01011384    KQ982736    KYQ51460.1    KZ288219    PBC32312.1    AC096311    AC099075    NNAY01001886    OXU22641.1    HAAF01007861    CCP79685.1    KQ981720    KYN37268.1    KQ977453    KYN02603.1    AJVK01031161    AJVK01031162    AJVK01031163    AL136901    AL833836    AK026597    AK093325    AL139341    AL357336    CH471066    BC036647    KQ981855    KYN34907.1    AC126679    AC131719    GL445255    EFN89911.1    ADFV01163760    ADFV01163761    ADFV01163762    ADFV01163763    ADFV01163764    ADFV01163765    ADFV01163766    ADFV01163767    ADFV01163768    JH882149    ELR50587.1    CABD030075919    CABD030075920    CABD030075921    AMGL01063756    AMGL01063757    AMGL01063758    AMGL01063759    AAGW02051460    AAGW02051461    CYRY02036813    VCX19821.1    GL192371    EFB27674.1    NBAG03000216    PNI81799.1    AACZ04051144    AJFE02089995    AJFE02089996    AJFE02089997   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000245037    + More
UP000007266    UP000009046    UP000030742    UP000019118    UP000008820    UP000000673    UP000075920    UP000075886    UP000075883    UP000075882    UP000075902    UP000076407    UP000075840    UP000075884    UP000075880    UP000069272    UP000076408    UP000075900    UP000092461    UP000075885    UP000075903    UP000007062    UP000075881    UP000076502    UP000007755    UP000183832    UP000078542    UP000279307    UP000053097    UP000000311    UP000036403    UP000078492    UP000075809    UP000005203    UP000008237    UP000005205    UP000078540    UP000002358    UP000242457    UP000002494    UP000215335    UP000078541    UP000092462    UP000005640    UP000189706    UP000000589    UP000076420    UP000248482    UP000001073    UP000009136    UP000001519    UP000261680    UP000002356    UP000001811    UP000002277    UP000240080   

PRIDE

H9J2N2    F1LN76    Q8NDM7    E9Q7R9   

Interpro

IPR039692   CFAP43        + More
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011044   Quino_amine_DH_bsu       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR001680   WD40_repeat       

SUPFAM

SSF50978   SSF50978        + More
SSF50969   SSF50969       
SSF50998   SSF50998       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9J2N2   A0A212EMK7   A0A2A4K7D3   A0A194QGX7   A0A2H1V9L3   A0A194QP16   + More
A0A2P8Z2C8   A0A1Y1MNW1   A0A0T6B2N7   A0A139WAR7   E0VIH6   U4U724   N6TFZ2   Q16LL1   W5JS84   A0A182VXG7   A0A1B6KRG4   A0A1B6FHM7   A0A182QQN2   A0A182MQ64   A0A182LCB4   A0A182U3F0   A0A182XE69   A0A182HJ54   A0A182NFS1   A0A182IT06   A0A182FQB9   A0A182XWT8   A0A182R387   A0A1B0CS30   A0A336L9U7   A0A1Q3G5D0   A0A182PAH6   A0A336LYQ2   A0A182UU88   Q7QBI0   A0A182K4I2   A0A154NY98   A0A1B6C203   A0A1B6DYZ3   F4WEF8   A0A1J1IQA7   A0A195C3Y7   A0A3L8DF81   A0A026W1G5   E2AGZ1   A0A0J7NV75   E2AVJ6   A0A195E867   A0A151WHY4   A0A026WC44   A0A087ZX04   E9I8L2   E9IDP2   E2C509   A0A158NFA1   A0A310SPU9   A0A195AVC9   A0A158NDE8   A0A195B4Y8   A0A195EDH4   F4W958   K7J465   A0A151WU77   A0A2A3EM09   F1LN76   A0A232EWE2   U6D9P3   A0A195FA10   A0A151IJA7   A0A1B0EX10   Q8NDM7   A0A195F412   A0A3Q0D0H3   E9Q7R9   E2B325   A0A3Q0D0E9   A0A1U7QAM0   A0A3Q0CZJ9   A0A2C9M1U3   A0A2Y9JCZ6   G1RZF0   L8I5L2   E1BMD1   G3QF26   A0A384BIW3   W5PA43   G1SVP3   A0A3P4QCZ7   D2GXY6   A0A2J8PCR7   H2Q2J6   A0A2R9BZS6  

KEGG

105841586    no KO assigned | (RefSeq) cilia- and flagella-associated protein 43

GO

GO:0016021   GO:1905419   GO:0007288   GO:0031514   GO:0005930  

PANTHER

PTHR14885:SF1  

Subcellular location

Cell projection  
Cilium  
Flagellum  
Cytoplasm  
Cytoskeleton  
Flagellum axoneme  

Length:

437

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.53175

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02495

outside

1  -  437

 

 

Pi

156.840369

Theta

179.406571

Tajima's D

0.491896

CLR

0.419399

CSRT

0.510874456277186

Interpretation

Uncertain