Gene

KWMTBOMO02301

Pre Gene Modal

BGIBMGA003782

Annotation

PREDICTED:_TBC1_domain_family_member_20?_partial_[Bombyx_mori]

Location

Bomo_Chr4(+):17230395-17238071      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.648 Nuclear   Reliability : 1.54

CDS

ATGGAATCCAATAATAAAGACAGTGAAGTTATAGATAAAAGTGTTATGAATGGTGAATGTTCACCAGCAGAGAGTATTCATCCGACAAATTTGAATAAAACGAAAAATATTGATGTCATTTCGACACCCTCCGAATTAAAATTCGATAATGAGCCGGAGGAGGAAGACCCCGAGATTGTAGAAAAGAGGAAAGAGATTGAGGAATGTCTCTCTGATGTCGATTCTGTTGATGTGGAAAAATGGAAGAATCTAGCCAGAAGCAAAGGAGGACTTATCTGTGATGAATACAGAAGAAGAATTTGGCCTCTGCTTGTTGGTGTTACAAAAGAGGAAATGACTGAAGCTCCATCATTGGATGAGTTATCAACGCATCCAGAATATAACCAGGTGGTGCTAGATGTGAACAGGTCTTTGAAAAGATTTCCTCCTGGCATTCCATACGAACAAAGAGTGGCCCTTCAGGACCAGCTGACAGTATTAATACTCAGGGTCATCATAAAATATCCACATTTAAAATATTACCAGGGTTACCATGACGTGGCGATCACCCTGCTCTTGGTGTGCGGAGACCGTGCCTCGTTCCCGCTGCTGTGCCGCCTGTCCTACGGCGCCGGGGCTCCGCTGGCGCCCTTCATGCAGCTCACGATGCAGCCCACGCAGCATCTGCTCAATTACATGCTGCCAGTCGTGGGCAGAGCCAATACCAAACTGGCCAATAGACTTGAAGAGGCGGGTGTGGGCACGATGTTCGCGCTGCCGTGGTACCTGACGTGGTTCGGGCACAGCCTGGGCCGGTACGCGCTCGTCGTGCGCCTCTACGACTACTTCCTGTGCGCGCCGCCGCTCTTCCCCGTGTACGTCACCGCCGCCGTCGTGCTGTGCAGAGCCGATGAAGTGTTTGAATGTGAACTGGACATGGCTATGCTGCATTGTTTACTGTCAAAGTTACCGGATGACTTGCCCTTCGAAGACATCTTGGTGACTGCCCAGGAGCTCTACGAGAACAACGACCCCCTCGACCTCGAGGACGAAGTCGTCGCACTCGAGCAGAAAGAGTGA

Protein

MESNNKDSEVIDKSVMNGECSPAESIHPTNLNKTKNIDVISTPSELKFDNEPEEEDPEIVEKRKEIEECLSDVDSVDVEKWKNLARSKGGLICDEYRRRIWPLLVGVTKEEMTEAPSLDELSTHPEYNQVVLDVNRSLKRFPPGIPYEQRVALQDQLTVLILRVIIKYPHLKYYQGYHDVAITLLLVCGDRASFPLLCRLSYGAGAPLAPFMQLTMQPTQHLLNYMLPVVGRANTKLANRLEEAGVGTMFALPWYLTWFGHSLGRYALVVRLYDYFLCAPPLFPVYVTAAVVLCRADEVFECELDMAMLHCLLSKLPDDLPFEDILVTAQELYENNDPLDLEDEVVALEQKE

Uniprot

H9J2P5   A0A212EMK6   A0A2A4K940   A0A194QNK7   A0A194QH65   A0A0L7LIW4   + More
U5EPB7   Q7Q4A6   A0A182JYL8   A0A182RMC2   A0A182Y3D8   A0A182MB07   Q17L28   A0A1L8DLR7   A0A182PAV7   A0A182XL88   A0A182QKK8   A0A182ICD9   A0A182VHD8   A0A182L0S7   A0A182U4Z2   A0A1S4GYN1   A0A182W6M4   A0A2M4BS83   A0A182NTT0   A0A2M4AQ61   A0A084WBV2   W5J3J4   A0A182H5U7   A0A182F4Z6   A0A182H8C0   A0A0T6AUY3   A0A1Q3FX72   A0A1Q3FXF2   A0A336LQX9   A0A1B0CZR8   A0A1Y1NEC9   A0A0K8TR81   U4TUT9   A0A1B6CZ04   A0A2J7QCU1   A0A1I8NG41   A0A0L0BQ76   A0A182SD61   N6TRX3   A0A1J1I456   B4GX92   A0A0K8U2F8   B4JPR0   A0A1B6GG14   A0A067RA51   A0A1I8P6J4   A0A0A1X9H8   A0A1A9WXE1   A0A1S4JPU6   B5DTF8   B0WQ80   A0A1B6L9V0   A0A182JIW8   B4LQZ0   D6WM56   A0A034WR29   A0A146L848   W8ASY3   A0A1A9Z446   A0A1A9UYR9   A0A0M4E1E5   A0A0V0GCC1   A0A224XH78   A0A3B0KBQ0   B4KJ12   D3TQC2   T1HTI0   B4NNX8   A0A2R7WWA3   R4G8Y8   A0A069DU99   A0A0P8Y7W6   B3N4P2   B4NZG0   A0A1W4UQQ4   A0A0R1DN96   A0A1A9YJW4   A0A1B0BQG1   Q9W5H8   B4NV68   B4ILL3   A0A0B4KEC2   A0A0J9TTM2   E0VY55   A0A0B4KEH8   A0A1S3ICT5   A0A1S3IDY9   A0A067ZT82   A0A0K2TK69   A0A2I4B8M8  

Pubmed

19121390    22118469    26354079    26227816    12364791    25244985    + More
17510324    20966253    24438588    20920257    23761445    26483478    28004739    26369729    23537049    25315136    26108605    17994087    24845553    25830018    15632085    18362917    19820115    25348373    26823975    24495485    20353571    26334808    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    20566863   

EMBL

BABH01034447    AGBW02013812    OWR42722.1    NWSH01000050    PCG80182.1    KQ461191    + More
KPJ07097.1    KQ458860    KPJ04759.1    JTDY01000935    KOB75370.1    GANO01003748    JAB56123.1    AAAB01008964    EAA12204.4    AXCM01002003    CH477219    EAT47398.1    GFDF01006671    JAV07413.1    AXCN02000803    APCN01000797    GGFJ01006702    MBW55843.1    GGFK01009589    MBW42910.1    ATLV01022472    KE525332    KFB47696.1    ADMH02002110    ETN58917.1    JXUM01026673    JXUM01026674    KQ560764    KXJ80972.1    JXUM01118080    KQ566147    KXJ70365.1    LJIG01022744    KRT78943.1    GFDL01002835    JAV32210.1    GFDL01002869    JAV32176.1    UFQT01000055    SSX19093.1    AJVK01009695    AJVK01009696    AJVK01009697    GEZM01009504    JAV94546.1    GDAI01000721    JAI16882.1    KB631676    ERL85319.1    GEDC01026199    GEDC01024939    GEDC01018723    JAS11099.1    JAS12359.1    JAS18575.1    NEVH01015876    PNF26397.1    JRES01001533    KNC22212.1    APGK01057255    APGK01057256    APGK01057257    KB741279    ENN71046.1    CVRI01000038    CRK94380.1    CH479195    EDW27203.1    GDHF01031380    JAI20934.1    CH916372    EDV98890.1    GECZ01008506    JAS61263.1    KK852595    KDR20624.1    GBXI01010613    GBXI01006917    JAD03679.1    JAD07375.1    CH475874    EDY71168.1    DS232036    EDS32740.1    GEBQ01019504    JAT20473.1    CH940649    EDW64529.2    KQ971343    EFA03356.2    GAKP01001853    JAC57099.1    GDHC01014086    JAQ04543.1    GAMC01017258    JAB89297.1    CP012523    ALC39166.1    GECL01000412    JAP05712.1    GFTR01006042    JAW10384.1    OUUW01000010    SPP85590.1    CH933807    EDW13525.1    EZ423624    ADD19900.1    ACPB03016020    CH964289    EDW86067.1    KK855763    PTY23822.1    GAHY01000147    JAA77363.1    GBGD01001607    JAC87282.1    CH902628    KPU75343.1    CH954177    EDV59996.1    CM000157    EDW89873.1    KRJ98762.1    JXJN01018612    AY113520    AE013599    AAM29525.1    EAA45988.2    CH986366    CM002911    EDX15943.1    KMY91564.1    CH480875    EDW54667.1    AGB93236.1    KMY91565.1    DS235843    EEB18311.1    AGB93237.1    KF039720    AHX25870.1    HACA01008530    CDW25891.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000053268    UP000037510    + More
UP000007062    UP000075881    UP000075900    UP000076408    UP000075883    UP000008820    UP000075885    UP000076407    UP000075886    UP000075840    UP000075903    UP000075882    UP000075902    UP000075920    UP000075884    UP000030765    UP000000673    UP000069940    UP000249989    UP000069272    UP000092462    UP000030742    UP000235965    UP000095301    UP000037069    UP000075901    UP000019118    UP000183832    UP000008744    UP000001070    UP000027135    UP000095300    UP000091820    UP000001819    UP000002320    UP000075880    UP000008792    UP000007266    UP000092445    UP000078200    UP000092553    UP000268350    UP000009192    UP000015103    UP000007798    UP000007801    UP000008711    UP000002282    UP000192221    UP000092443    UP000092460    UP000000803    UP000000304    UP000001292    UP000009046    UP000085678    UP000192220   

PRIDE

H9J2P5    Q9W5H8   

Pfam

PF00566   RabGAP-TBC

Interpro

IPR000195   Rab-GTPase-TBC_dom        + More
IPR035969   Rab-GTPase_TBC_sf       

SUPFAM

SSF47923   SSF47923       

ProteinModelPortal

H9J2P5   A0A212EMK6   A0A2A4K940   A0A194QNK7   A0A194QH65   A0A0L7LIW4   + More
U5EPB7   Q7Q4A6   A0A182JYL8   A0A182RMC2   A0A182Y3D8   A0A182MB07   Q17L28   A0A1L8DLR7   A0A182PAV7   A0A182XL88   A0A182QKK8   A0A182ICD9   A0A182VHD8   A0A182L0S7   A0A182U4Z2   A0A1S4GYN1   A0A182W6M4   A0A2M4BS83   A0A182NTT0   A0A2M4AQ61   A0A084WBV2   W5J3J4   A0A182H5U7   A0A182F4Z6   A0A182H8C0   A0A0T6AUY3   A0A1Q3FX72   A0A1Q3FXF2   A0A336LQX9   A0A1B0CZR8   A0A1Y1NEC9   A0A0K8TR81   U4TUT9   A0A1B6CZ04   A0A2J7QCU1   A0A1I8NG41   A0A0L0BQ76   A0A182SD61   N6TRX3   A0A1J1I456   B4GX92   A0A0K8U2F8   B4JPR0   A0A1B6GG14   A0A067RA51   A0A1I8P6J4   A0A0A1X9H8   A0A1A9WXE1   A0A1S4JPU6   B5DTF8   B0WQ80   A0A1B6L9V0   A0A182JIW8   B4LQZ0   D6WM56   A0A034WR29   A0A146L848   W8ASY3   A0A1A9Z446   A0A1A9UYR9   A0A0M4E1E5   A0A0V0GCC1   A0A224XH78   A0A3B0KBQ0   B4KJ12   D3TQC2   T1HTI0   B4NNX8   A0A2R7WWA3   R4G8Y8   A0A069DU99   A0A0P8Y7W6   B3N4P2   B4NZG0   A0A1W4UQQ4   A0A0R1DN96   A0A1A9YJW4   A0A1B0BQG1   Q9W5H8   B4NV68   B4ILL3   A0A0B4KEC2   A0A0J9TTM2   E0VY55   A0A0B4KEH8   A0A1S3ICT5   A0A1S3IDY9   A0A067ZT82   A0A0K2TK69   A0A2I4B8M8  

PDB

4HLQ     E-value=3.60939e-61,     Score=595

KEGG

101740586    K20372 TBC1 domain family member 20 | (RefSeq) TBC1 domain family member 20

GO

GO:0016021   GO:0005789   GO:0005096   GO:0006888   GO:0017137   GO:0005783   GO:0043087  

Length:

352

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.71598

Exp number, first 60 AAs:

0

Total prob of N-in:

0.12673

outside

1  -  352

 

 

Pi

259.524287

Theta

149.527127

Tajima's D

1.987021

CLR

0.658224

CSRT

0.879906004699765

Interpretation

Uncertain