SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02301
Pre Gene Modal
BGIBMGA003782
Annotation
PREDICTED:_TBC1_domain_family_member_20?_partial_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.648 Nuclear   Reliability : 1.54
 

Sequence

CDS
ATGGAATCCAATAATAAAGACAGTGAAGTTATAGATAAAAGTGTTATGAATGGTGAATGTTCACCAGCAGAGAGTATTCATCCGACAAATTTGAATAAAACGAAAAATATTGATGTCATTTCGACACCCTCCGAATTAAAATTCGATAATGAGCCGGAGGAGGAAGACCCCGAGATTGTAGAAAAGAGGAAAGAGATTGAGGAATGTCTCTCTGATGTCGATTCTGTTGATGTGGAAAAATGGAAGAATCTAGCCAGAAGCAAAGGAGGACTTATCTGTGATGAATACAGAAGAAGAATTTGGCCTCTGCTTGTTGGTGTTACAAAAGAGGAAATGACTGAAGCTCCATCATTGGATGAGTTATCAACGCATCCAGAATATAACCAGGTGGTGCTAGATGTGAACAGGTCTTTGAAAAGATTTCCTCCTGGCATTCCATACGAACAAAGAGTGGCCCTTCAGGACCAGCTGACAGTATTAATACTCAGGGTCATCATAAAATATCCACATTTAAAATATTACCAGGGTTACCATGACGTGGCGATCACCCTGCTCTTGGTGTGCGGAGACCGTGCCTCGTTCCCGCTGCTGTGCCGCCTGTCCTACGGCGCCGGGGCTCCGCTGGCGCCCTTCATGCAGCTCACGATGCAGCCCACGCAGCATCTGCTCAATTACATGCTGCCAGTCGTGGGCAGAGCCAATACCAAACTGGCCAATAGACTTGAAGAGGCGGGTGTGGGCACGATGTTCGCGCTGCCGTGGTACCTGACGTGGTTCGGGCACAGCCTGGGCCGGTACGCGCTCGTCGTGCGCCTCTACGACTACTTCCTGTGCGCGCCGCCGCTCTTCCCCGTGTACGTCACCGCCGCCGTCGTGCTGTGCAGAGCCGATGAAGTGTTTGAATGTGAACTGGACATGGCTATGCTGCATTGTTTACTGTCAAAGTTACCGGATGACTTGCCCTTCGAAGACATCTTGGTGACTGCCCAGGAGCTCTACGAGAACAACGACCCCCTCGACCTCGAGGACGAAGTCGTCGCACTCGAGCAGAAAGAGTGA
Protein
MESNNKDSEVIDKSVMNGECSPAESIHPTNLNKTKNIDVISTPSELKFDNEPEEEDPEIVEKRKEIEECLSDVDSVDVEKWKNLARSKGGLICDEYRRRIWPLLVGVTKEEMTEAPSLDELSTHPEYNQVVLDVNRSLKRFPPGIPYEQRVALQDQLTVLILRVIIKYPHLKYYQGYHDVAITLLLVCGDRASFPLLCRLSYGAGAPLAPFMQLTMQPTQHLLNYMLPVVGRANTKLANRLEEAGVGTMFALPWYLTWFGHSLGRYALVVRLYDYFLCAPPLFPVYVTAAVVLCRADEVFECELDMAMLHCLLSKLPDDLPFEDILVTAQELYENNDPLDLEDEVVALEQKE

Summary

EMBL
BABH01034447    AGBW02013812    OWR42722.1    NWSH01000050    PCG80182.1    KQ461191    + More
KPJ07097.1    KQ458860    KPJ04759.1    JTDY01000935    KOB75370.1    GANO01003748    JAB56123.1    AAAB01008964    EAA12204.4    AXCM01002003    CH477219    EAT47398.1    GFDF01006671    JAV07413.1    AXCN02000803    APCN01000797    GGFJ01006702    MBW55843.1    GGFK01009589    MBW42910.1    ATLV01022472    KE525332    KFB47696.1    ADMH02002110    ETN58917.1    JXUM01026673    JXUM01026674    KQ560764    KXJ80972.1    JXUM01118080    KQ566147    KXJ70365.1    LJIG01022744    KRT78943.1    GFDL01002835    JAV32210.1    GFDL01002869    JAV32176.1    UFQT01000055    SSX19093.1    AJVK01009695    AJVK01009696    AJVK01009697    GEZM01009504    JAV94546.1    GDAI01000721    JAI16882.1    KB631676    ERL85319.1    GEDC01026199    GEDC01024939    GEDC01018723    JAS11099.1    JAS12359.1    JAS18575.1    NEVH01015876    PNF26397.1    JRES01001533    KNC22212.1    APGK01057255    APGK01057256    APGK01057257    KB741279    ENN71046.1    CVRI01000038    CRK94380.1    CH479195    EDW27203.1    GDHF01031380    JAI20934.1    CH916372    EDV98890.1    GECZ01008506    JAS61263.1    KK852595    KDR20624.1    GBXI01010613    GBXI01006917    JAD03679.1    JAD07375.1    CH475874    EDY71168.1    DS232036    EDS32740.1    GEBQ01019504    JAT20473.1    CH940649    EDW64529.2    KQ971343    EFA03356.2    GAKP01001853    JAC57099.1    GDHC01014086    JAQ04543.1    GAMC01017258    JAB89297.1    CP012523    ALC39166.1    GECL01000412    JAP05712.1    GFTR01006042    JAW10384.1    OUUW01000010    SPP85590.1    CH933807    EDW13525.1    EZ423624    ADD19900.1    ACPB03016020    CH964289    EDW86067.1    KK855763    PTY23822.1    GAHY01000147    JAA77363.1    GBGD01001607    JAC87282.1    CH902628    KPU75343.1    CH954177    EDV59996.1    CM000157    EDW89873.1    KRJ98762.1    JXJN01018612    AY113520    AE013599    AAM29525.1    EAA45988.2    CH986366    CM002911    EDX15943.1    KMY91564.1    CH480875    EDW54667.1    AGB93236.1    KMY91565.1    DS235843    EEB18311.1    AGB93237.1    KF039720    AHX25870.1    HACA01008530    CDW25891.1   
Pfam
PF00566   RabGAP-TBC
Interpro
IPR000195   Rab-GTPase-TBC_dom        + More
IPR035969   Rab-GTPase_TBC_sf       
SUPFAM
SSF47923   SSF47923       
PDB
4HLQ     E-value=3.60939e-61,     Score=595

Ontologies

Topology

Length:
352
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.71598
Exp number, first 60 AAs:
0
Total prob of N-in:
0.12673
outside
1  -  352
 
 

Population Genetic Test Statistics

Pi
259.524287
Theta
149.527127
Tajima's D
1.987021
CLR
0.658224
CSRT
0.879906004699765
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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