Silkworm Genome Informatics Database

Gene

KWMTBOMO02293

Pre Gene Modal

BGIBMGA003079

Annotation

PREDICTED:_transcription_factor_Sox-14-like_[Papilio_machaon]

Location

Bomo_Chr4(+):17048111-17061135 View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear Reliability : 3.507

CDS

ATGTCGCTGGGTAAACAGCCTAATGAGCATATTAAGAGGCCGATGAATGCGTTTATGGTATGGTCCAGGGGCCAGAGGAGGAAGATGGCGCAAGACAACCCGAAGATGCACAACTCCGAGATATCTAAGAGATTAGGCGCTGAATGGAAACTTCTGACTGAGATGGAGAAAAGGCCTTTTATTGATGAAGCGAAAAGACTCAGGGCTCTACACATGAAGGAACACCCGGACTACAAATACCGCCCTCGACGGAAACCAAAAGCCCTTGTAAAGAAAGAACCGAAATTCGGCTTCGGCATCAATGGACTAATGGCCCCCGTGCCACGGCTGGTCACGCCCTCTATGCCTCATCCCGTACCCCAATTACCGGTCCCACATCACTTATTACCGGAAAAACCGGATCTGAGCCGGGCGCTGTTCCCACCACTACCGTATCCGTTTTATCCGTTCGCGAAACTGCCGACCGATGATGGAAAATTAGCTGCGGAATTAGCTCATTTACAGGCTCTGTACGGCGGAGCACTGTATAGCAGCGCTCTCTACAATAGTGCACTGTCCCCTTGCGGATGTCCACCACGTCGGACCCCATCACCCCCCGCCGATCTCAAACGTCCAGTAGCATACGTCCTCATGAAGAGCGACGAGGAGCCTCCTCAACACGTCATATGA

Protein

MSLGKQPNEHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKALVKKEPKFGFGINGLMAPVPRLVTPSMPHPVPQLPVPHHLLPEKPDLSRALFPPLPYPFYPFAKLPTDDGKLAAELAHLQALYGGALYSSALYNSALSPCGCPPRRTPSPPADLKRPVAYVLMKSDEEPPQHVI

Uniprot

A0A0L7LCX3 A0A194QNL5 A0A212EMK3 A0A2A4K865 A0A2H1VMN6 A0A1E1W2K9 + More
A0A1E1W2E2 D6WND1 A0A0L7QNL0 A0A1W4WKY1 A0A154PME3

Pubmed

26227816 26354079 22118469 18362917 19820115

EMBL

JTDY01001614 KOB73358.1 KQ461191 KPJ07107.1 AGBW02013812 OWR42714.1 + More
NWSH01000050 PCG80196.1 ODYU01003387 SOQ42083.1 GDQN01009848 JAT81206.1 GDQN01009911 JAT81143.1 KQ971343 EFA04579.1 KQ414851 KOC60227.1 KQ434978 KZC13036.1

Proteomes

UP000037510 UP000053240 UP000007151 UP000218220 UP000007266 UP000053825 + More
UP000192223 UP000076502

Pfam

PF00505 HMG_box

Interpro

IPR009071 HMG_box_dom + More
IPR036910 HMG_box_dom_sf

SUPFAM

SSF47095 SSF47095

Gene 3D

1.10.30.10

ProteinModelPortal

A0A0L7LCX3 A0A194QNL5 A0A212EMK3 A0A2A4K865 A0A2H1VMN6 A0A1E1W2K9 + More
A0A1E1W2E2 D6WND1 A0A0L7QNL0 A0A1W4WKY1 A0A154PME3

PDB

1O4X E-value=4.50659e-31, Score=333

KEGG

101735842 K09267 transcription factor SOX1/3/14/21 (SOX group B) | (RefSeq) transcription factor SOX-14

GO

GO:0005634 GO:0003677 GO:0006355 GO:0030154 GO:0044798 GO:0000981

Length:

222

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04457

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04430

outside

1 - 222

Pi

289.857073

Theta

180.814282

Tajima's D

1.707581

CLR

0.123042

CSRT

0.830958452077396

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics