SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02292
Pre Gene Modal
BGIBMGA003078
Annotation
PREDICTED:_sex-determining_region_Y_protein-like_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 2.84
 

Sequence

CDS
ATGGCATATCAAACGGAGCAGAACAAACAGAAGACGAGACACACAAATCCTTACCATATAAAACGACCTATGAACGCCTTCATGGTATGGTCCCGGTTACAGAGGAAGAAAATATCCATAATGAACCCGAAACTCCACAACTCGGAAATATCAAAGCGCTTAGGATTAGAATGGAAGGGTCTAGACGAGACCGCCAAGAGACCTTTTATCGACGAAGCTAAGAGACTAAGATTGAAACACATGCAGGACTATCCCGATTACAAATACCGGCCCAGGAGGAAGAATAGACCTGACGTAGCGTACACAAGCGATCCGGCTTACAGCAGGGAGATGTTTGTAGAGGTGGAGCCAAGGACGACAGAGTCCTACCAAATACCATTGTCGTACGCGGATCCGCTTACATACAATAACATGATAACTTACACTGTACCTTCGTTACCACAGCCGACTTACGTCCCCAGGTCGAAGGAAGATAATCTATCGAGAATTGACTTAAGCCCGTTACCTTCAATTGAGAGTATCTCCCCAAGACCGTTCGCAGTCGTCAGCCAGCAGATGATGGTCAAGGCGTACCAGGACTTGCAGTATGTCGGAGACGTTCCGAGGATATCTTACCATTACCCATTCGGGGTGCAATAG
Protein
MAYQTEQNKQKTRHTNPYHIKRPMNAFMVWSRLQRKKISIMNPKLHNSEISKRLGLEWKGLDETAKRPFIDEAKRLRLKHMQDYPDYKYRPRRKNRPDVAYTSDPAYSREMFVEVEPRTTESYQIPLSYADPLTYNNMITYTVPSLPQPTYVPRSKEDNLSRIDLSPLPSIESISPRPFAVVSQQMMVKAYQDLQYVGDVPRISYHYPFGVQ

Summary

Pfam
PF00505   HMG_box        + More
PF12336   SOXp
Interpro
IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       
IPR022097   SOX_fam       
SUPFAM
SSF47095   SSF47095       
Gene 3D
PDB
1O4X     E-value=6.48369e-25,     Score=279

Ontologies

Topology

Length:
212
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00338
Exp number, first 60 AAs:
0.00071
Total prob of N-in:
0.38222
outside
1  -  212
 
 

Population Genetic Test Statistics

Pi
397.685377
Theta
202.565911
Tajima's D
2.441203
CLR
0.044158
CSRT
0.938803059847008
Interpretation
Uncertain
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