Gene

KWMTBOMO02290

Pre Gene Modal

BGIBMGA003082

Annotation

PREDICTED:_transcription_factor_Sox-21-B_[Bombyx_mori]

Location

Bomo_Chr4(-):16726416-16795610      View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear   Reliability : 4.422

CDS

ATGTCAGCGATGGGCGCCATAGGCACCATGGGCTCGCTATCCATGAACGGGCAGCCGCAGCAGAAGAAATCCCAGGAGGAACACATAAAACGACCAATGAACGCCTTCATGGTTTGGTCTCGGTTGCAGAGGCGGAAAATAGCTCAGGACAATCCCAAGATGCACAATTCAGAAATATCAAAGAGATTAGGAGCTGAATGGAAACTCCTGACAGAAGACGAGAAAAGGCCGTTCATCGATGAAGCCAAACGTCTCAGGGCGATGCACATGAAGGAACATCCAGATTACAAGTACAGGCCGCGGAGGAAACCGAAGACTCTCAGGAAGGAGGGGTACCCGTACTCGATACCGTATCCCAGTGTGCCCATGGACGCGCTCAGAGCGGGTATGGCCGGTGGGGGCATGGGTCAAGCGATGGGAAGCTACTACGGCGCAGCTTACGGTCCGCTTGGAGCCAGCATGGCGGCAGCCGCCGCAGCCGCTGCTCAGCAGAATGCTATTTCAGCAGCCTTGACCCCTAATGCTCAGGTCAGTGCATCGATGGACATGTCGAAATACTCGATAGAAGCTGAAAAATACAGGAGTTACGGAATGTACCCGGATCCTTCACGAGGCTACCTGGATTCGGCAGCCTTGTCCAAGGCCTACATGTATATGGACCAGCAACAGCAGAGATATCCCGTGGACATCAGCAAGATGTACACGGAGGCTTCAGCCGCCATGGCCGGGCTGAACTCTGTCAATTCAGCTCCGTCCAGCCTATCGCCCAGGTCTCCAGCAGAGTCTCCGGACATGGCCAAAGCACAGGAAAGGACTGAAGGCAGTACATCATCAGGATCGAATCCGTCGCCATCCCTGCCATACTACCAAGGGTCATCAAGTATCCTGATGCCGCAATATCCTGGCCAATACGCCCAGAGCACCCAGGCGGGGGAGTTTCGGAGACCGTTGACTGTCATATTTTGA

Protein

MSAMGAIGTMGSLSMNGQPQQKKSQEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEDEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLRKEGYPYSIPYPSVPMDALRAGMAGGGMGQAMGSYYGAAYGPLGASMAAAAAAAAQQNAISAALTPNAQVSASMDMSKYSIEAEKYRSYGMYPDPSRGYLDSAALSKAYMYMDQQQQRYPVDISKMYTEASAAMAGLNSVNSAPSSLSPRSPAESPDMAKAQERTEGSTSSGSNPSPSLPYYQGSSSILMPQYPGQYAQSTQAGEFRRPLTVIF

Uniprot

A0A2H1V7B7   A0A2A4K8K0   A0A212F4S7   D6WND2   A0A2I2L6S0   A0A026WFP6   + More
A0A1B6L3R7   E2B1E2   A0A3L8DK10   U4TYX5   E0VEL4   A0A1B6H5J2   A0A1B6HSH8   E2C2Q7   A0A154PP54   A0A195CCP2   A0A088A1H6   K7J5A4   A0A195BK79   A0A158NLW3   A0A0C9QS67   A0A336LY82   Q9VUD3   A0A0J9RUT8   B4HHC6   M9PCG2   A0A1I8PVW6   B4PI05   B3ND16   A0A1W4UIJ4   B4QJY2  

Pubmed

22118469    18362917    19820115    24508170    20798317    30249741    + More
23537049    20566863    20075255    21347285    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17994087    17550304   

EMBL

ODYU01001045    SOQ36707.1    NWSH01000042    PCG80326.1    AGBW02010321    OWR48722.1    + More
KQ971343    EFA04578.1    LT908027    SOF03508.1    KK107238    EZA54753.1    GEBQ01021639    JAT18338.1    GL444886    EFN60485.1    QOIP01000007    RLU20239.1    KB631867    ERL86819.1    DS235093    EEB11820.1    GECU01037745    GECU01010612    GECU01008034    JAS69961.1    JAS97094.1    JAS99672.1    GECU01034462    GECU01030062    GECU01017921    JAS73244.1    JAS77644.1    JAS89785.1    GL452203    EFN77742.1    KQ434978    KZC13038.1    KQ977957    KYM98480.1    AAZX01003947    KQ976450    KYM85693.1    ADTU01019743    ADTU01019744    ADTU01019745    ADTU01019746    ADTU01019747    GBYB01006599    GBYB01006600    JAG76366.1    JAG76367.1    UFQT01000293    SSX22925.1    AE014296    AY058313    AAF49754.2    AAL13542.1    AGB94521.1    CM002912    KMY99531.1    CH480815    EDW41451.1    AGB94522.1    CM000159    EDW94480.2    CH954178    EDV51738.1    CM000363    EDX10420.1   

Proteomes

UP000218220    UP000007151    UP000007266    UP000053097    UP000000311    UP000279307    + More
UP000030742    UP000009046    UP000008237    UP000076502    UP000078542    UP000005203    UP000002358    UP000078540    UP000005205    UP000000803    UP000001292    UP000095300    UP000002282    UP000008711    UP000192221    UP000000304   

PRIDE

Q9VUD3   

Pfam

PF00505   HMG_box

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

A0A2H1V7B7   A0A2A4K8K0   A0A212F4S7   D6WND2   A0A2I2L6S0   A0A026WFP6   + More
A0A1B6L3R7   E2B1E2   A0A3L8DK10   U4TYX5   E0VEL4   A0A1B6H5J2   A0A1B6HSH8   E2C2Q7   A0A154PP54   A0A195CCP2   A0A088A1H6   K7J5A4   A0A195BK79   A0A158NLW3   A0A0C9QS67   A0A336LY82   Q9VUD3   A0A0J9RUT8   B4HHC6   M9PCG2   A0A1I8PVW6   B4PI05   B3ND16   A0A1W4UIJ4   B4QJY2  

PDB

1O4X     E-value=1.43107e-30,     Score=331

KEGG

101735973    K09267 transcription factor SOX1/3/14/21 (SOX group B) | (RefSeq) transcription factor Sox-21-B

GO

GO:0003677   GO:0005634   GO:0006355   GO:0000981   GO:0044798   GO:0030154  

Length:

321

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.45166

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05058

outside

1  -  321

 

 

Pi

190.487337

Theta

152.80475

Tajima's D

0.50767

CLR

1.079628

CSRT

0.508674566271686

Interpretation

Uncertain