Gene

KWMTBOMO02289

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_xuthus]

Location

Bomo_Chr4(-):16601552-16604110      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.379

CDS

ATGGTACGTAACCGGAAAGTAGTGTTTGGTCTATTGAATGCAGGCTCTTTGTCTACAAATCGGGACGAATTTCTTTTGGCCATGGCTCGCCATTCTGTTGACGTTATGGCTATAAACGAGACTTGGCTTAGGTTTGGGGAGGAGGGCCGTGCACCTTGTGTGCCAGGCTACAGGCTCAAGCATATTCCTCGACCAGTTAGTATAAGGGGTGGTCGTGGTGGCGGGGTGGCCTTTTATCTCAGAGCTGATATAAGTGCTCGAGTGTGTAAGCACCCCGGACATTTGGATGTTGAACAGTTGTGGATAACAGTGAATTTTTGCGGGAAAAAGCTATTAATAGGCACTGCATATCGCCCCCCTTGGTCTGATCTGGAAAATTTCCTAGAGGGATTGACCGAAAGTATTGGTGCTATGGCTCCTTATGACAATATAGTGCTTCTCGGAGATTTTAATGTAAACCTATTGGACTGTAATTGTTCTAGAACAAAAAAAATAAATGAATTTCTAAGCCACTTCAGTCTCTCGCAAATAGTAAGGACTGCAACACACTTTATGAGTGGTAGTAGTACTTTGTTGGATGTTATTTGTACTGACATTGGCGTTAATGATGTCGGGGTTGATTATATTCCCGAGCTTGGCCACCATGCTTTTGTCACATGTGAGACTTTGATCCGAAAGGAAAGACCAATGTCTAGAATGATAACTTCCCGTCAATTTAAAAATATCTTGGAGGAGTTCTTTACTCAGGATCTAAATATAATACCCTGGTCGAACATCGCCCTCCTGGATGACGTTGACACGATGGTTTACACCTTTTCTATGTTTATTCTGTACCTGTACGATCTCCATGCTCCGCTCAAAACCCTGAAATTCAAAACACGTTCCACTCCTTGGATTACTGATAATGTCCGATTATTGTTTAAATTGCGAGATGCTGCACGCTATAGATCACATGTAACTCAGGTTCATAGTCATAAGCAGTATTATTTAGACCTTAAGAAGCAGGCAGCTAGCGTCTTAGCATCGGAAAAAAAGACCTACTACAACAATTATATTAATAGCAACTTCGGAAACCCTAAAAAGTTATGGAAAAATCTGAAATCTGATGTGATTCCGTCACATCAGGAGAAAGCATTGCCTGAACACCTTAATGACGCTAATGCTATCAATGAAGCTTTTCTGGATGTACCCGGGGTCTGTAGTTCTGACGTTTCAGGATACTCATTCTTTGAGTATTCTAACACATCTCCAAAGTTTACGCTTAAAACTGTCAACCAGGATACGGTTCTTAAGATTATTAACAGCATTAAATCCAACGCTCAAGGCACTGACGGGATAAGCGGTGAGATGATATCGCTCTCACTGCCTTCAACATTGGAGGCGATTACTAGCATTATCAATAAGTCCATTGATACAAATACATTTCCTGCTCAGTGGCGATGTTCTGTGGTCAGCCCTATTCCGAAAGTCACGCACCCTCAAGCTTTTAAAGATCTTAGGCCTATTAGTGTGTTGCCTTTTCTGTCCAAGATCTTGGAGAAGGTAGTTTACTCACAGGTAGCGGCATATATCGAATCAAATAACATTCTTCCAGAGTTTCAATCGGGTTTCAGAAAAAGCCGAGGAACGGCCGCTGCTCTTACTGACATTGTGGGTAATATTCTCGAGGCTCGGGACAGGAGCCAGGGTACGATACTGACGCTGCTGGATTTCTCACGGGCTTTTGATACAATTAACACTGCCTTACTCTTAGCAAAATTAACTCACTACGGGTTCTCTGATAATGCTGTGGAATGGTTTAGCAGTTATATGTCGAGTAGAACGCAATTTGTACAAATACGGAAAGAAGATGGAACTAAACTAACCTCTACTTCTAAGCCGATTACTAGAGGCGTTCCCCAAGGTTCTGTCCTGGGACCATTGTTGTTTATTTTGTACAGTGCAGATATCATTCAGTGTTTCAAGAATTGTAAATATCATGTTTATGCTGACGATGTACAATTATACCATTCTTTTGATGTTGGAGATACCCCTTCTGCTGTCAATTTTATCAATGAGGATCTGCAGAGGATTGTCTCTTGGTCTGAACAGAATTCCTTAGTACTGAACCCCTCTAAGTCTAAATACATGATACTAGGCAGTAAATCTCAGATAGCAAAGTTTTTATCACTCGATCCTAAAGTGACTGTTTCTGGTAAAGAAATTGATCGGACTGAAGATTCTGTACTCGTTTAG

Protein

MVRNRKVVFGLLNAGSLSTNRDEFLLAMARHSVDVMAINETWLRFGEEGRAPCVPGYRLKHIPRPVSIRGGRGGGVAFYLRADISARVCKHPGHLDVEQLWITVNFCGKKLLIGTAYRPPWSDLENFLEGLTESIGAMAPYDNIVLLGDFNVNLLDCNCSRTKKINEFLSHFSLSQIVRTATHFMSGSSTLLDVICTDIGVNDVGVDYIPELGHHAFVTCETLIRKERPMSRMITSRQFKNILEEFFTQDLNIIPWSNIALLDDVDTMVYTFSMFILYLYDLHAPLKTLKFKTRSTPWITDNVRLLFKLRDAARYRSHVTQVHSHKQYYLDLKKQAASVLASEKKTYYNNYINSNFGNPKKLWKNLKSDVIPSHQEKALPEHLNDANAINEAFLDVPGVCSSDVSGYSFFEYSNTSPKFTLKTVNQDTVLKIINSIKSNAQGTDGISGEMISLSLPSTLEAITSIINKSIDTNTFPAQWRCSVVSPIPKVTHPQAFKDLRPISVLPFLSKILEKVVYSQVAAYIESNNILPEFQSGFRKSRGTAAALTDIVGNILEARDRSQGTILTLLDFSRAFDTINTALLLAKLTHYGFSDNAVEWFSSYMSSRTQFVQIRKEDGTKLTSTSKPITRGVPQGSVLGPLLFILYSADIIQCFKNCKYHVYADDVQLYHSFDVGDTPSAVNFINEDLQRIVSWSEQNSLVLNPSKSKYMILGSKSQIAKFLSLDPKVTVSGKEIDRTEDSVLV

Uniprot

A0A2A4IWQ4   A0A2W1BK42   A0A2A4JM54   A0A2A4KAV4   A0A2A4JF59   A0A1Y1LSZ2   + More
A0A1Y1M3U5   A0A354GJG9   A0A3C1S2P1   A0A1Y1LVZ3   A0A3C1S1N3   A0A1Y1L0L4   A0A1B6MC85   A0A1B6L6Y3   A0A2B4RHP5   A0A1Y1NB24   A0A0J7N335   A0A1Y1KZ78   A0A354GES4   A0A3C1RYE8   A0A1Y1LAN8   A0A1Y1N9S9   A0A1Y1LAP1   A0A0J7K589   A0A1Y1NKD6   A0A2B4SCV9   U5EQV9   A0A354GIY0   U5ENG8   A0A3C1RY27   A0A2A4JRM8   A0A1Y1LFG1   A0A1Y1LAM2   A0A354GI57   A0A3C1S360   A0A354GG23   A0A0A9YIX2   U5EEL4   A0A2B4R4J4   A0A0P4W7S4   W8B6W6   A0A354GHC6   A0A2B4SVL4   A0A1L8DJB0   A0A3B3BNA3   A0A3C1RZS6   A0A1W7R6K8   A0A1W7R6E4   A0A3B3I7Q5   U5EVC6   A0A1W7R6F6   W8AIM4   U5EQA6   A0A3B3HIF3   U5ETR7   A0A3B3HCE9   A0A0J7K195   A0A1A8SG53   A0A3P8PBK6   A0A3B3IG59   U5EQB9   A0A3B3B6W1   A0A3P9M960   A0A3B3HK54   W4Z8W8   A0A3B3DM95   A0A3N0XTH3   A0A1A8P8T9   A0A2B4RB31   A0A2B4SLH5   A0A1W7R6J3   A0A3P9KUG0   A0A3B3IMM5   A0A3P8P2B9   A0A2B4R971   A0A0F8AI28   K7JTK2   A0A3P9M3V9  

Pubmed

28756777    28004739    30148503    25401762    24495485    29451363    + More
17554307    25835551    20075255   

EMBL

NWSH01006271    PCG63543.1    KZ150070    PZC74075.1    NWSH01000998    PCG73165.1    + More
NWSH01000010    PCG80923.1    NWSH01001817    PCG70032.1    GEZM01051381    GEZM01051380    JAV74995.1    GEZM01041318    GEZM01041317    JAV80524.1    DNUT01000507    HBI41157.1    DMQF01000361    HAO15230.1    GEZM01045590    GEZM01045589    JAV77734.1    DMQF01000352    HAO15199.1    GEZM01074146    JAV64657.1    GEBQ01006447    JAT33530.1    GEBQ01020572    JAT19405.1    LSMT01000554    PFX16333.1    GEZM01007604    JAV95063.1    LBMM01010997    KMQ87090.1    GEZM01074147    JAV64656.1    DNUT01000056    HBI39512.1    DMQF01000030    HAO14052.1    GEZM01061184    JAV70703.1    GEZM01008907    JAV94684.1    GEZM01061183    JAV70704.1    LBMM01014048    KMQ85356.1    GEZM01000581    JAV98361.1    LSMT01000121    PFX26660.1    GANO01004066    JAB55805.1    DNUT01000451    HBI40968.1    GANO01004094    JAB55777.1    DMQF01000003    HAO13943.1    NWSH01000817    PCG74070.1    GEZM01061182    JAV70705.1    GEZM01061185    JAV70702.1    DNUT01000374    HBI40695.1    DMQF01000478    HAO15711.1    DNUT01000170    HBI39961.1    GBHO01012041    GBHO01012038    JAG31563.1    JAG31566.1    GANO01004275    JAB55596.1    LSMT01001965    PFX11729.1    GDRN01075630    GDRN01075629    JAI63022.1    GAMC01021037    GAMC01021036    JAB85519.1    DNUT01000297    HBI40414.1    LSMT01000021    PFX32582.1    GFDF01007660    JAV06424.1    DMQF01000157    HAO14486.1    GEHC01000940    JAV46705.1    GEHC01000909    JAV46736.1    GANO01001936    JAB57935.1    GEHC01000896    JAV46749.1    GAMC01021038    GAMC01021033    GAMC01021031    JAB85522.1    GANO01004338    JAB55533.1    GANO01004238    JAB55633.1    LBMM01017805    KMQ83966.1    HAEI01014175    SBS16644.1    GANO01004361    JAB55510.1    AAGJ04020328    RJVU01061422    ROJ36303.1    HAEG01006811    SBR77686.1    LSMT01000852    PFX14019.1    LSMT01000067    PFX29357.1    GEHC01000892    JAV46753.1    LSMT01001138    PFX12907.1    KQ041881    KKF21356.1    AAZX01004038   

Proteomes

UP000218220    UP000225706    UP000036403    UP000261560    UP000001038    UP000265100    + More
UP000265180    UP000007110    UP000002358   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF18701   DUF5641
PF05380   Peptidase_A17
PF00665   rve
PF17917   RT_RNaseH

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR011011   Znf_FYVE_PHD       
IPR021109   Peptidase_aspartic_dom_sf       
IPR040676   DUF5641       
IPR041373   RT_RNaseH       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR036514   SGNH_hydro_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57903   SSF57903       
SSF53098   SSF53098       
SSF50630   SSF50630       

Gene 3D

3.60.10.10     3.30.420.10     3.40.50.1110    

ProteinModelPortal

A0A2A4IWQ4   A0A2W1BK42   A0A2A4JM54   A0A2A4KAV4   A0A2A4JF59   A0A1Y1LSZ2   + More
A0A1Y1M3U5   A0A354GJG9   A0A3C1S2P1   A0A1Y1LVZ3   A0A3C1S1N3   A0A1Y1L0L4   A0A1B6MC85   A0A1B6L6Y3   A0A2B4RHP5   A0A1Y1NB24   A0A0J7N335   A0A1Y1KZ78   A0A354GES4   A0A3C1RYE8   A0A1Y1LAN8   A0A1Y1N9S9   A0A1Y1LAP1   A0A0J7K589   A0A1Y1NKD6   A0A2B4SCV9   U5EQV9   A0A354GIY0   U5ENG8   A0A3C1RY27   A0A2A4JRM8   A0A1Y1LFG1   A0A1Y1LAM2   A0A354GI57   A0A3C1S360   A0A354GG23   A0A0A9YIX2   U5EEL4   A0A2B4R4J4   A0A0P4W7S4   W8B6W6   A0A354GHC6   A0A2B4SVL4   A0A1L8DJB0   A0A3B3BNA3   A0A3C1RZS6   A0A1W7R6K8   A0A1W7R6E4   A0A3B3I7Q5   U5EVC6   A0A1W7R6F6   W8AIM4   U5EQA6   A0A3B3HIF3   U5ETR7   A0A3B3HCE9   A0A0J7K195   A0A1A8SG53   A0A3P8PBK6   A0A3B3IG59   U5EQB9   A0A3B3B6W1   A0A3P9M960   A0A3B3HK54   W4Z8W8   A0A3B3DM95   A0A3N0XTH3   A0A1A8P8T9   A0A2B4RB31   A0A2B4SLH5   A0A1W7R6J3   A0A3P9KUG0   A0A3B3IMM5   A0A3P8P2B9   A0A2B4R971   A0A0F8AI28   K7JTK2   A0A3P9M3V9  

PDB

6AR3     E-value=2.60012e-05,     Score=117

KEGG

NA   

GO

GO:0003964   GO:0016021   GO:0003676   GO:0015074   GO:0004519   GO:0004386  

Length:

744

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.30025

Exp number, first 60 AAs:

0.0352700000000001

Total prob of N-in:

0.00702

outside

1  -  744

 

 

Pi

237.993327

Theta

158.447571

Tajima's D

1.734938

CLR

19.633466

CSRT

0.838458077096145

Interpretation

Uncertain