Gene

KWMTBOMO02280

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr4(+):16050511-16051155      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.241

CDS

ATGGACAACCCTCTGACTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGAACCGTCGAGGCGGTCCGCCCGGTTCTCACGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTAACGCAGATGCTTACCGGCCATGGTTGTTTCGGCCGGTACCTGCACAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCTGACCGCGACGAGGATGACACAGCGGAACACACGCTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG

Protein

MDNPLTRRSVLEAWSRRLADPSAGLRTVEAVRPVLTDWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIAGREPTAQCHHCADRDEDDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Cofactor

FAD

Similarity

Belongs to the GMC oxidoreductase family.

Uniprot

Q5KTM7   Q868Q4   A0A2W1BDU5   A0A0J7K2M2   A0A0J7KM11   A0A0J7KCI1   + More
A0A2W1B333   A0A2W1BTM2   A0A0J7N1D9   Q8MY27   A0A0J7KJB9   A0A2W1C3J5   A0A3L8D4Y9   Q8MY31   Q8MY33   A0A2H1W776   A0A3L8DTK4   A0A3L8D2F4   A0A3L8DDS1   A0A2W1BSQ5   Q8MY35   A0A2W1BXC9   A0A2W1BY04   A0A0J7MZM4   A0A0J7KIY3   A0A2H1WNZ5   A0A0J7N7H9   A0A2H1W4U7   A0A2H1VYR8   A0A0J7L0U0   A0A0J7KCQ3   A0A0J7KIY5   A0A0J7KS67   A0A2H1VXT5   A0A0J7KT62   A0A0J7KKS4   A0A0J7N7S8   J9KZ24   A0A0J7KIQ5   A0A0J7KLT9   A0A0J7KJG6   A0A3L8DIL1   A0A3L8D6D2   A0A0J7JZF7   A0A0J7MZX3   A0A0J7KJ07   A0A0J7JZ13   A0A0J7KQK3   A0A0J7KIM6   A0A0J7KM81   A0A0J7KJH4   A0A0J7KPZ3   A0A3L8DXT9   A0A3L8DY91   A0A3L8D2G3   A0A0J7K3R6   A0A0J7KFG9   A0A0Q9WRU0   A0A0J7NEG9   A0A3L8DDV9   A0A0J7KWU5   A0A0J7KQU9   A0A2S2P2F0   K7JEF7   A0A2S2PBP5   A0A0J7K3F1   A0A2S2P557  

Pubmed

12644555    28756777    30249741    17994087    20075255   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150308    PZC71477.1    + More
LBMM01016102    KMQ84557.1    LBMM01005707    KMQ91279.1    LBMM01009501    KMQ88083.1    KZ150386    PZC71062.1    KZ149922    PZC77701.1    LBMM01012027    KMQ86470.1    AB078935    BAC06462.1    LBMM01006538    KMQ90523.1    KZ149896    PZC78733.1    QOIP01000014    RLU15083.1    AB078931    BAC06456.1    AB078930    BAC06454.1    ODYU01006757    SOQ48893.1    QOIP01000004    RLU23632.1    QOIP01000060    RLU14687.1    QOIP01000009    RLU18544.1    KZ149950    PZC76665.1    AB078929    BAC06452.1    KZ149918    PZC77857.1    PZC77700.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01006909    KMQ90209.1    ODYU01009945    SOQ54696.1    LBMM01008861    KMQ88580.1    ODYU01006342    SOQ48109.1    ODYU01005282    SOQ45985.1    LBMM01001564    KMQ96079.1    LBMM01009494    KMQ88097.1    LBMM01006954    KMQ90166.1    LBMM01003679    KMQ93242.1    ODYU01005115    SOQ45661.1    LBMM01003452    KMQ93523.1    LBMM01006022    KMQ91008.1    LBMM01008682    KMQ88705.1    ABLF02006132    LBMM01006996    KMQ90129.1    LBMM01005733    KMQ91252.1    LBMM01006671    KMQ90407.1    QOIP01000007    RLU20280.1    QOIP01000012    RLU16027.1    LBMM01019838    KMQ83439.1    LBMM01012797    KMQ85990.1    LBMM01006662    KMQ90413.1    LBMM01019839    KMQ83438.1    LBMM01004272    KMQ92618.1    LBMM01007036    KMQ90099.1    LBMM01005634    KMQ91349.1    LBMM01006657    KMQ90417.1    LBMM01004505    KMQ92346.1    QOIP01000003    RLU25053.1    QOIP01000002    RLU25407.1    QOIP01000031    RLU14697.1    LBMM01015018    KMQ84954.1    LBMM01008349    KMQ88951.1    CH963857    KRF98317.1    LBMM01006110    KMQ90925.1    QOIP01000010    RLU18098.1    LBMM01002480    KMQ94776.1    LBMM01004152    KMQ92762.1    GGMR01010769    MBY23388.1    AAZX01003808    AAZX01004267    AAZX01010366    GGMR01014195    MBY26814.1    LBMM01015025    KMQ84953.1    GGMR01011974    MBY24593.1   

Proteomes

UP000036403    UP000279307    UP000007819    UP000007798    UP000002358   

PRIDE

Q5KTM7    Q868Q4   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF00732   GMC_oxred_N
PF00650   CRAL_TRIO

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001251   CRAL-TRIO_dom       
IPR036865   CRAL-TRIO_dom_sf       
IPR036273   CRAL/TRIO_N_dom_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF51905   SSF51905       
SSF52087   SSF52087       
SSF46938   SSF46938       
SSF53098   SSF53098       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.50.50.60     3.40.525.10    

CDD

cd00170  SEC14

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1BDU5   A0A0J7K2M2   A0A0J7KM11   A0A0J7KCI1   + More
A0A2W1B333   A0A2W1BTM2   A0A0J7N1D9   Q8MY27   A0A0J7KJB9   A0A2W1C3J5   A0A3L8D4Y9   Q8MY31   Q8MY33   A0A2H1W776   A0A3L8DTK4   A0A3L8D2F4   A0A3L8DDS1   A0A2W1BSQ5   Q8MY35   A0A2W1BXC9   A0A2W1BY04   A0A0J7MZM4   A0A0J7KIY3   A0A2H1WNZ5   A0A0J7N7H9   A0A2H1W4U7   A0A2H1VYR8   A0A0J7L0U0   A0A0J7KCQ3   A0A0J7KIY5   A0A0J7KS67   A0A2H1VXT5   A0A0J7KT62   A0A0J7KKS4   A0A0J7N7S8   J9KZ24   A0A0J7KIQ5   A0A0J7KLT9   A0A0J7KJG6   A0A3L8DIL1   A0A3L8D6D2   A0A0J7JZF7   A0A0J7MZX3   A0A0J7KJ07   A0A0J7JZ13   A0A0J7KQK3   A0A0J7KIM6   A0A0J7KM81   A0A0J7KJH4   A0A0J7KPZ3   A0A3L8DXT9   A0A3L8DY91   A0A3L8D2G3   A0A0J7K3R6   A0A0J7KFG9   A0A0Q9WRU0   A0A0J7NEG9   A0A3L8DDV9   A0A0J7KWU5   A0A0J7KQU9   A0A2S2P2F0   K7JEF7   A0A2S2PBP5   A0A0J7K3F1   A0A2S2P557  

PDB

4XVM     E-value=0.0323489,     Score=82

KEGG

101743871    no KO assigned | (RefSeq) uncharacterized LOC101743871

GO

GO:0003964   GO:0016746   GO:0016021   GO:0050660   GO:0016614   GO:0008270   GO:0003676  

Length:

178

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01378

Exp number, first 60 AAs:

0.00299

Total prob of N-in:

0.20335

outside

1  -  178

 

 

Pi

21.597544

Theta

23.845352

Tajima's D

-0.288448

CLR

0.86794

CSRT

0.290535473226339

Interpretation

Uncertain