Gene

KWMTBOMO02274

Annotation

PREDICTED:_U11/U12_small_nuclear_ribonucleoprotein_25_kDa_protein-like_[Papilio_polytes]

Location

Bomo_Chr4(-):15832524-15834035      View in EpiBrowser

Full name

Carbohydrate sulfotransferase      

Location in the cell

Nuclear   Reliability : 2.87

CDS

ATGGACATCGATAATTTAAGTAACCTTAGTCACGATGATCTTATAGAATCAACTCAATTAACCCTTGGAACGCTACTTAGGACTGATCCTCTGCTTAGTGATCTTCCACAAGATATTATTTTAGAAGAAATTGTATCTCAGATTGCTGTGGAAAATGGACAGTCAATAACAATATTTATATCTAGAGACCCAGAACCTACTCTTAAAGTAATTGTACCACAAAATGCAACAGTTCGTGATCTGAAAAAAGCAACGGCAAGACATTTTGAACTCCAACAAAAGAGAACAGGGCTCAAAGTGAAGATATCTTGGAAATACATTTGGAAAACTTACCATTTGGCATATGATAGTTTAATTTTAGATAATGATGACCAGTGCATTGAAGACTATGGTGTATGTAATAAAGTGGTTTTAACATTTAAAAAAAATAAAAAAATAAAACAATAA

Protein

MDIDNLSNLSHDDLIESTQLTLGTLLRTDPLLSDLPQDIILEEIVSQIAVENGQSITIFISRDPEPTLKVIVPQNATVRDLKKATARHFELQQKRTGLKVKISWKYIWKTYHLAYDSLILDNDDQCIEDYGVCNKVVLTFKKNKKIKQ

Similarity

Belongs to the sulfotransferase 2 family.

Uniprot

A0A212EJA4   A0A2H1WWZ1   A0A2A4ITG6   A0A194QNN5   S4P9D7   A0A1Y1JY58   + More
A0A194PTV3   A0A151IEY7   E2AA48   A0A026WUG6   E2BTZ2   F4WWF7   A0A195BNI5   A0A158NKM4   A0A195DGB6   A0A151WRN6   A0A195FBN5   A0A2A3EHM3   A0A0N0BH41   A0A088A3X9   V9IDJ8   A0A0J7NR57   K7IT79   T1H7X7   A0A0P4VJB4   R4G5V9   A0A154PK81   A0A224XZL6   A0A146KNB1   A0A0A9WPX3   A0A0V0G8L3   A0A232FIZ8   A0A069DP25   A0A146LLK3   N6UIB2   A0A226P3Y1   R4GJU5   A0A1B6FED4   A0A023F7Q2   A0A1B6LTU4   A0A1S3K650   Q6PA98   A0A218UNN9   A0A1L8EQ18   W4XEC3   I3IYV2   T1IHP2   A0A3B5AAC0   A0A0L8HA83   A0A3B3ZK90   A0A3P9D7P1   A0A3B4FL46   A0A3P8NWR4   A0A3P8Z1L0   A0A3B3YWC4   A0A087XY65   A0A3B3TM41   H3B3P5   H3DML1   A0A3B4V6P3   C3YNK9   Q4RHC1   A0A3B5LZ70   K7G135   Q567J5   A0A0F8D2X5   A0A0S7K6W0   A0A2D0PXG3   W5MLD0   A0A2C9M8V6   B5XFG3   Q5BJ55   A0A1A8JYX4   A0A1A8DK71   A0A1A8UQA4   M3ZD13   Q28IZ5   A0A1S3R9D9   A0A146VBD7   A0A1W5AIF0   A0A3P8SX98   A0A3B4XCC8   A0A060WY32   A0A1A8R5L8   A0A3B3CVW7   A0A1A8LH39   A0A1A8F346   A0A3B3Q9U5   A0A1A7WCD8   G3PLI3   A0A3P8VS63   A0A060YZA8   A0A067R158   A0A146VBD1   H2Y1A1   F6PJK8   A0A3B4DUK4   A0A3B1JWX2   A0A0B6ZQE8   H0WKX9  

EC Number

2.8.2.-

Pubmed

22118469    26354079    23622113    28004739    20798317    24508170    + More
30249741    21719571    21347285    20075255    27129103    26823975    25401762    28648823    26334808    23537049    24621616    15592404    25474469    27762356    25186727    25463417    25069045    9215903    15496914    18563158    17381049    23594743    25835551    15562597    20433749    23542700    20431018    24755649    29451363    29240929    24487278    24845553    12481130    15114417    19892987    25329095   

EMBL

AGBW02014499    OWR41566.1    ODYU01011680    SOQ57580.1    NWSH01008106    PCG62688.1    + More
KQ461191    KPJ07127.1    GAIX01009110    JAA83450.1    GEZM01097353    GEZM01097352    JAV54262.1    KQ459598    KPI94565.1    KQ977862    KYM99268.1    GL438029    EFN69686.1    KK107119    QOIP01000009    EZA58754.1    RLU18643.1    GL450531    EFN80891.1    GL888406    EGI61499.1    KQ976439    KYM86761.1    ADTU01018888    KQ980886    KYN11886.1    KQ982805    KYQ50514.1    KQ981693    KYN37823.1    KZ288239    PBC31303.1    KQ435759    KOX75692.1    JR040458    AEY59145.1    LBMM01002347    KMQ94945.1    AAZX01005794    ACPB03012029    GDKW01002361    JAI54234.1    GAHY01000180    JAA77330.1    KQ434943    KZC12233.1    GFTR01002713    JAW13713.1    GDHC01020615    JAP98013.1    GBHO01034128    GBHO01034125    GBRD01004343    GBRD01000720    JAG09476.1    JAG09479.1    JAG61478.1    GECL01001771    JAP04353.1    NNAY01000153    OXU30520.1    GBGD01003284    JAC85605.1    GDHC01011339    JAQ07290.1    APGK01019139    KB740092    KB632429    ENN81470.1    ERL95423.1    AWGT02000179    OXB74521.1    AC172304    GECZ01021211    JAS48558.1    GBBI01001478    JAC17234.1    GEBQ01012886    JAT27091.1    BC060402    AAH60402.1    MUZQ01000203    OWK55397.1    CM004483    OCT61446.1    AAGJ04080300    AERX01007658    JH429957    KQ418715    KOF86183.1    AYCK01008271    AFYH01029399    AFYH01029400    GG666534    EEN58104.1    CAAE01015050    CAG12211.1    AGCU01096306    CU463855    BC093151    AAH93151.1    KQ040873    KKF33526.1    GBYX01220341    GBYX01220340    JAO72473.1    AHAT01013649    BT049782    ACI69583.1    BC091616    AAH91616.1    HAED01010826    HAEE01005181    SBR25201.1    HADZ01019102    HAEA01005423    SBQ33903.1    HADY01003130    HAEJ01009339    SBS49796.1    AAMC01079237    AAMC01079238    AAMC01079239    AAMC01079240    CR760143    CAJ82445.1    GCES01071569    JAR14754.1    FR904797    CDQ71897.1    HAEH01005165    HAEI01007312    SBS01286.1    HAEF01006798    HAEG01014306    SBR44180.1    HAEB01006002    HAEC01010485    SBQ52529.1    HADW01002272    HADX01004288    SBP03672.1    FR928934    CDQ97106.1    KK852788    KDR16534.1    GCES01071570    JAR14753.1    EAAA01002610    HACG01023065    CEK69930.1    AAQR03077729    AAQR03077730   

Proteomes

UP000007151    UP000218220    UP000053240    UP000053268    UP000078542    UP000000311    + More
UP000053097    UP000279307    UP000008237    UP000007755    UP000078540    UP000005205    UP000078492    UP000075809    UP000078541    UP000242457    UP000053105    UP000005203    UP000036403    UP000002358    UP000015103    UP000076502    UP000215335    UP000019118    UP000030742    UP000198419    UP000000539    UP000085678    UP000197619    UP000186698    UP000007110    UP000005207    UP000261400    UP000053454    UP000261520    UP000265160    UP000261460    UP000265100    UP000265140    UP000261480    UP000028760    UP000261500    UP000008672    UP000007303    UP000261420    UP000001554    UP000261380    UP000007267    UP000000437    UP000221080    UP000018468    UP000076420    UP000087266    UP000002852    UP000008143    UP000192224    UP000265080    UP000261360    UP000193380    UP000261560    UP000261540    UP000007635    UP000265120    UP000027135    UP000008144    UP000002281    UP000261440    UP000018467    UP000005225   

Pfam

PF18036   Ubiquitin_4        + More
PF03567   Sulfotransfer_2

Interpro

IPR039690   SNRNP25        + More
IPR040610   SNRNP25_ubiquitin       
IPR029071   Ubiquitin-like_domsf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       
IPR039599   RBM48       
IPR018011   Carb_sulfotrans_8-10       
IPR005331   Sulfotransferase       
IPR000626   Ubiquitin_dom       

SUPFAM

SSF54236   SSF54236        + More
SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

A0A212EJA4   A0A2H1WWZ1   A0A2A4ITG6   A0A194QNN5   S4P9D7   A0A1Y1JY58   + More
A0A194PTV3   A0A151IEY7   E2AA48   A0A026WUG6   E2BTZ2   F4WWF7   A0A195BNI5   A0A158NKM4   A0A195DGB6   A0A151WRN6   A0A195FBN5   A0A2A3EHM3   A0A0N0BH41   A0A088A3X9   V9IDJ8   A0A0J7NR57   K7IT79   T1H7X7   A0A0P4VJB4   R4G5V9   A0A154PK81   A0A224XZL6   A0A146KNB1   A0A0A9WPX3   A0A0V0G8L3   A0A232FIZ8   A0A069DP25   A0A146LLK3   N6UIB2   A0A226P3Y1   R4GJU5   A0A1B6FED4   A0A023F7Q2   A0A1B6LTU4   A0A1S3K650   Q6PA98   A0A218UNN9   A0A1L8EQ18   W4XEC3   I3IYV2   T1IHP2   A0A3B5AAC0   A0A0L8HA83   A0A3B3ZK90   A0A3P9D7P1   A0A3B4FL46   A0A3P8NWR4   A0A3P8Z1L0   A0A3B3YWC4   A0A087XY65   A0A3B3TM41   H3B3P5   H3DML1   A0A3B4V6P3   C3YNK9   Q4RHC1   A0A3B5LZ70   K7G135   Q567J5   A0A0F8D2X5   A0A0S7K6W0   A0A2D0PXG3   W5MLD0   A0A2C9M8V6   B5XFG3   Q5BJ55   A0A1A8JYX4   A0A1A8DK71   A0A1A8UQA4   M3ZD13   Q28IZ5   A0A1S3R9D9   A0A146VBD7   A0A1W5AIF0   A0A3P8SX98   A0A3B4XCC8   A0A060WY32   A0A1A8R5L8   A0A3B3CVW7   A0A1A8LH39   A0A1A8F346   A0A3B3Q9U5   A0A1A7WCD8   G3PLI3   A0A3P8VS63   A0A060YZA8   A0A067R158   A0A146VBD1   H2Y1A1   F6PJK8   A0A3B4DUK4   A0A3B1JWX2   A0A0B6ZQE8   H0WKX9  

PDB

1V2Y     E-value=7.28145e-13,     Score=173

KEGG

101738356    K13153 U11/U12 small nuclear ribonucleoprotein 25 kDa protein | (RefSeq) U11/U12 small nuclear ribon

GO

GO:0005689   GO:0000398   GO:0003676   GO:0008146   GO:0016051   GO:0016021   GO:0000139   GO:0005829   GO:0005654   GO:0045171  

PANTHER

PTHR14942   PTHR20957   PTHR12137  

Subcellular location

Golgi apparatus membrane  

Length:

148

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00166

Exp number, first 60 AAs:

0.00109

Total prob of N-in:

0.21433

outside

1  -  148

 

 

Pi

16.629327

Theta

24.656842

Tajima's D

-0.630584

CLR

351.669787

CSRT

0.213439328033598

Interpretation

Uncertain