Silkworm Genome Informatics Database

Gene

KWMTBOMO02267

Pre Gene Modal

BGIBMGA003094

Annotation

PREDICTED:_broad-complex_core_protein_isoforms_1/2/3/4/5_[Bombyx_mori]

Location

Bomo_Chr4(-):15402463-15408141 View in EpiBrowser

Transcription factor

ZBTB

Location in the cell

Nuclear Reliability : 4.148

CDS

ATGATCAGGCTAGACCGTCGCCAATTCAAAGCGCATAAGGTGATACTGGCCGCGTGCAGTAAACATTTTCAAGAGTTATTCGACACGGCGCCACCTAGCCATGCGGGCGCTTGTTATGTCATTTTGGAGGCTACCACTGCCGACAACATGCAGGCCCTCCTCGAATTCATGTACAAGGGCGAGGTACACGTCAGCCAGGATGCCCTTTCAAGCTTTCTTAAAAGCGGCGAGAATTTACAGGTCAAGGGTCTGTCTATGGAAATGTCCCAGGATGCTTGGGTAAAACAACAAACACAGCAATCATCTGGAGAACGTCACCAAACACGTATAAAGACAAGTCCGGTATCAGGGTCGGGGAATTGTGAGGTCCAAGAGTCTACCCCTCTGCAACCCCACAATACCACTTTCGCTCCAATTATGCCCCAATATGGACTGCCCATCCATAGCGGTGGAAACATAGGGCGATTTGCGCCCTCCGGCCACCACTTGCCAATACACCCGTCTCACCGCCGACCAGCGCCTCCAAAGTCCTCTCCATGCCAGAGTCCGATCACAAGGAATTACAGGCAAAGTTCTTCATCATCGCACTGCGGGAGTGTCGCCGACGAGCCGGACACCCGTTCATCGCCTGGAGCTAGTGCTAGATATGAGGAGAACCCCCCAGACTGCACATCGACCCACGGCAATCCGGTTAAGAACAACGGCTACGAACGCAGTGCATCCGCTAACGACGAAATAATGGAACGCTTGCCAAACGACCAGGGTGCTGAAGATTTACGGGTTAAAAATGATAATGATTACCACCCAAGTGGGGGGTACAACAATTCGCCGCCACCGGCGCCGTCCATTACCGGCACCAACTACCATGAGAAGCCGATAGAGACTTCGGTGCCACCCAAACAAAGCCCCGACATTTGGCCAACGAAAATAATAACCAGCAAATCTGGAGGAATTGCTACTGCTGACGGAAAGAAACTGAAATGCCCATATTGCGAGAGACTATACGGATACGAGACAAATCTACGGGCCCACATCAGGCAGCGGCATCAGGGCATCAGGGTGCCTTGTCCGCACTGCTCGCGCACCTTCACGCGCAACAACACCGTGCGGCGCCACATCGCGCGCGAGCACCGCCACCAGGTCACGCCGCACATCTCCCAAGGACCACTACCGAACCACACGCATACGCAACGGGCTCGCCTGTAG

Protein

MIRLDRRQFKAHKVILAACSKHFQELFDTAPPSHAGACYVILEATTADNMQALLEFMYKGEVHVSQDALSSFLKSGENLQVKGLSMEMSQDAWVKQQTQQSSGERHQTRIKTSPVSGSGNCEVQESTPLQPHNTTFAPIMPQYGLPIHSGGNIGRFAPSGHHLPIHPSHRRPAPPKSSPCQSPITRNYRQSSSSSHCGSVADEPDTRSSPGASARYEENPPDCTSTHGNPVKNNGYERSASANDEIMERLPNDQGAEDLRVKNDNDYHPSGGYNNSPPPAPSITGTNYHEKPIETSVPPKQSPDIWPTKIITSKSGGIATADGKKLKCPYCERLYGYETNLRAHIRQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVTPHISQGPLPNHTHTQRARL

Uniprot

H9J0Q7 A0A2H1X4L7 A0A194PTW3 A0A194QUA7 A0A0L7LB29 A0A2A4JM01 + More
U5EPS6 A0A1B6HY31 A0A1B6LFE7 A0A067QHV5 A0A336LS16 A0A182GYT4 J9LY89 A0A2S2NK73 A0A2H8TK05 A0A023F2P0 A0A224XHU5 A0A1J1IQ78

Pubmed

19121390 26354079 26227816 24845553 26483478 25474469 + More

EMBL

BABH01010190 ODYU01012994 SOQ59584.1 KQ459598 KPI94575.1 KQ461191 + More
KPJ07136.1 JTDY01001869 KOB72678.1 NWSH01001032 PCG73011.1 GANO01004564 JAB55307.1 GECU01028156 JAS79550.1 GEBQ01017575 JAT22402.1 KK853383 KDR08001.1 UFQT01000130 SSX20605.1 JXUM01002899 JXUM01002900 JXUM01002901 KQ560147 KXJ84168.1 ABLF02018783 GGMR01004971 MBY17590.1 GFXV01002555 MBW14360.1 GBBI01003408 JAC15304.1 GFTR01007048 JAW09378.1 CVRI01000054 CRL00657.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000037510 UP000218220 UP000027135 + More
UP000069940 UP000249989 UP000007819 UP000183832

PRIDE

H9J0Q7

Pfam

PF00651 BTB + More
PF00096 zf-C2H2

Interpro

IPR000210   BTB/POZ_dom        + More
IPR011333   SKP1/BTB/POZ_sf
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type

SUPFAM

SSF54695 SSF54695 + More
SSF57667 SSF57667

ProteinModelPortal

H9J0Q7 A0A2H1X4L7 A0A194PTW3 A0A194QUA7 A0A0L7LB29 A0A2A4JM01 + More
U5EPS6 A0A1B6HY31 A0A1B6LFE7 A0A067QHV5 A0A336LS16 A0A182GYT4 J9LY89 A0A2S2NK73 A0A2H8TK05 A0A023F2P0 A0A224XHU5 A0A1J1IQ78

PDB

2NN2 E-value=6.14152e-05, Score=111

KEGG

105842315 no KO assigned | (RefSeq) broad-complex core protein isoforms 1/2/3/4/5

GO

GO:0003676 GO:0005515 GO:0046872 GO:0007165 GO:0006072 GO:0009331 GO:0005634 GO:0006289 GO:0004518 GO:0006281 GO:0048384

Length:

401

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00325

Exp number, first 60 AAs:

0.00306

Total prob of N-in:

0.03678

outside

1 - 401

Pi

13.097636

Theta

13.374552

Tajima's D

-1.010588

CLR

1.696365

CSRT

0.134043297835108

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics