SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02266  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003095
Annotation
cuticular_protein_RR-2_motif_58_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 0.992
 

Sequence

CDS
ATGGTCGCCGTAGCCCACGGCTGGGTGGTACCAGTAGTCAAAGTAGACGCTGAACACAGCAGCTTCTCGTACAACGTGGCCGACCCCAGCACTGGGGACTTCAAGAGTCAGGTTGAAACTCGCGTGGGTGGTACCGTCTCCGGGCAGTACTCTCTCATCGAACCCGACGGTACCAAGCGCACTGTGGACTACGCCGCCGATGACGTGAACGGATTCAACGCTGTTGTGCGCAAGGACCCTGTTGTCGCTCCCGCTGTGGTTTCTGCCGCTCCTGCTCCATTAGCCGTCCGTGCCGTCCCCATCCCTGCTGTCGTTCCTGCCTATCCACCTTTATCTGATGTATACTCGCCTAACTACCCCGGACCCGTATACCCCGGATATCCAAGCTATTCTGGCATTTACATCGACCCCGAAGTTTATTGGTAA
Protein
MVAVAHGWVVPVVKVDAEHSSFSYNVADPSTGDFKSQVETRVGGTVSGQYSLIEPDGTKRTVDYAADDVNGFNAVVRKDPVVAPAVVSAAPAPLAVRAVPIPAVVPAYPPLSDVYSPNYPGPVYPGYPSYSGIYIDPEVYW

Summary

Uniprot
Pfam
PF00379   Chitin_bind_4
Interpro
IPR031311   CHIT_BIND_RR_consensus        + More
IPR000618   Insect_cuticle       
ProteinModelPortal

Ontologies

Topology

Length:
141
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.12347
Exp number, first 60 AAs:
0.000610000000000001
Total prob of N-in:
0.13604
outside
1  -  141
 
 

Population Genetic Test Statistics

Pi
249.849615
Theta
212.30672
Tajima's D
0.538231
CLR
0
CSRT
0.527573621318934
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28467696 VDAATIEKIEAGFSK 100.00 4e-08
28467696 TVDYAADAHSGFNAVVR 100.00 4e-05
21761556 ADADYTSFAYDVADPSTGDFK 100.00 4e-05
29197581 SFSEVAGACVPQQR 100.00 4e-05
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