Silkworm Genome Informatics Database

Gene

KWMTBOMO02262

Pre Gene Modal

BGIBMGA003096

Annotation

cuticular_protein_RR-2_motif_62_precursor_[Bombyx_mori]

Location

Bomo_Chr4(-):15373268-15375071 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.482 Nuclear Reliability : 1.343

CDS

ATGGCAGTTAAGTTCCTCGTATTCGCCTTGCTGGTGGCAACAGTGAGAGCCAGCGGTGGGTACTCGAGCTTCTCATATGGAGTGTCGGACCCGAACACCGGAGACGTCAAGGATCAACAGGAAAACCGTGTCGGCGGAAACGTGGTCGGCAAATACTCGCTCCTCGAAGCTGACGGGACCAAGCGCGTCGTCGAATATTCCGCGGACGACGCTACTGGCTTTAAGGCCGTAGTACACAAGGAACCCGCTGGACCTCTCGGAAACACAGCACTTAGTGCTCCTCTATCTCATGCTGCTGCATTAGCTAGCGCTGGACCACTGTCCCATGCTCCATTAGCCGCTGCTTCTCCACTAGTTCATGGTTCTCCGTTAGCTGGTGTCAATCCGCTGGCTCACGCTGCACCTCTTGCAGCGGGACATTTGAGTCATGCAAACCAAGCGGCTGCAGCACATGCCGCGGCCGATCATGCTGCTAAAGTAGCTCATGCAAATAAAATAGCACATGCTCATGGTGCCGCATCGGTCCCATTAGCTCCAGTACCTTCCTTGACACCGGTTAATCCTTTGGCATCAGTTAACCCAATAAGCCACGCTGGACACCACGCTGCAGCCGGTCCCCTTGTTCATGGTGCTTCCGTTGCGCCTTTTGGTGCCGTCGGTCCTTTTGGAGCTGCCGGTCCTCTCGGTCACGGTGCCTTCCCGGGCTCCTTAGGCTTCGGCCACGGTGGTGCAGTAGGTAACCTCGGTGGTTTCCCCAACGGTCTCAACTATGGACATGGTGCTCCCTCTGTTTCATCTTACTCACATACCATCTTGCACAACGGACCTGGTGCTTATCCTAATGGGGGTGCTTATCCTAGTGGGGGTGCTTATCCTAATGGGGGTGCTTATCCATATGGCGGTGCCTATGGCAGACACGGTGCGTATGGTCAAAGTGGATTCGGTGGACCAGCTGGATATGGTGTATATGGCGCCCCTAATTTTGGTGGACCTTTAGCTCATGGAGCTGGTTGGGCGCCTAATGCAGCATTGGCTAACGGTGCAGGATGGGCTCCTAACAGTGCTCTCCCACACGGTGCTCTAGCCAACCCTTTGGCTGCCGGAGTATATAGCCGTGGATTAGGCTATAACCCGAGACTCGGCTGGTGA

Protein

MAVKFLVFALLVATVRASGGYSSFSYGVSDPNTGDVKDQQENRVGGNVVGKYSLLEADGTKRVVEYSADDATGFKAVVHKEPAGPLGNTALSAPLSHAAALASAGPLSHAPLAAASPLVHGSPLAGVNPLAHAAPLAAGHLSHANQAAAAHAAADHAAKVAHANKIAHAHGAASVPLAPVPSLTPVNPLASVNPISHAGHHAAAGPLVHGASVAPFGAVGPFGAAGPLGHGAFPGSLGFGHGGAVGNLGGFPNGLNYGHGAPSVSSYSHTILHNGPGAYPNGGAYPSGGAYPNGGAYPYGGAYGRHGAYGQSGFGGPAGYGVYGAPNFGGPLAHGAGWAPNAALANGAGWAPNSALPHGALANPLAAGVYSRGLGYNPRLGW

Uniprot

C0H6Q4

Pubmed

19121390 19280704

EMBL

BABH01010193 BR000563 FAA00565.1

Proteomes

UP000005204

PRIDE

C0H6Q4

Pfam

PF00379 Chitin_bind_4

Interpro

IPR000618 Insect_cuticle + More
IPR031311 CHIT_BIND_RR_consensus

ProteinModelPortal

C0H6Q4

KEGG

100379409 no KO assigned | (RefSeq) CPR62, BmorCPR62; cuticular protein RR-2 motif 62

GO

GO:0042302 GO:0008270 GO:0007165 GO:0006072 GO:0009331 GO:0005634 GO:0006289 GO:0004518 GO:0006281 GO:0048384

SignalP

Position: 1 - 17, Likelihood: 0.995517

Length:

382

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.15532

Exp number, first 60 AAs:

1.09246

Total prob of N-in:

0.05068

outside

1 - 382

Pi

256.37227

Theta

186.158929

Tajima's D

1.158086

CLR

0

CSRT

0.703714814259287

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree