Silkworm Genome Informatics Database

Gene

KWMTBOMO02255

Annotation

Gag_polyprotein_[Operophtera_brumata]

Location

Bomo_Chr4(-):14918181-14921131 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.359

CDS

ATGGTTTTTACGATAAAATTTTTATCCCTACAAAAAACTGAACTGGAATACGAAGTTGCGATAAGAGGTGAGACCCCCGGTGCTACGGTGGCTGATCTTAGGAAACAGATTAGCAAATTAAGTCAATCTTTTCCTTCAGAAGATGTATTATGTTCTCATCTCGAACCCCTAGATGATCTTCAAGCTGTTTTGGACTTGCTGAATAAAGTCAATGCAAGTCTCGAGTCAAGCCCTACTGATAAAAGTACATTATCGCGCATAGAAAATATTTTTCATCACCTTTATCATAGGATCAACAGAATAGTGGTTGATGAAGTAGAGAAGCCGCACTCTGCTTGTAGTAAACTTTTTAAAGAATTCTACGAAAAATTCCAGAAATTAAGCAAAAAGGCAATTGATCCTCTATTAATTGGTGTATCTAGTTCAGCATCTGCTTCTGTACCTGGCATTCAGGCACCAATTAATGTCGCTGTTACTTGTGATAGAGGTGTTACTTCAGAACTGAGTAGGCTGAAGTTCGATGGTAAGTCATGTGTTCGATCTTTTATTCAACGTGTTTACGAATTTAGCGAGGCGCGTAGCATCCCCGACTCAAAACTTCTCTCATCTGCTACAGAAATATTTACAGATGATGCGCTGCATTGGTTCAGGAGTATTAAGGACCAGGTTTCATCTTGGGATGATCTTGTTGTTCTTTTAAAAAAAGGTTTTGATAAAACAGACTATGATTACCGTTTACTTGCTGAGATTCGTGCTAGGACTCAAGGGGAAACGGAAAATATTACGATATACTTAGCTATTCTCTCGGGTATGTTTGCCCGCCTCTTAAAATCACTTTCGGAAGAGGACAAGCTTGAAATAGTATTACATAATATCCGCCCTTGCTATGCAAGCACTCTAGCCTCTGCTACTGAAATATGTAACATTGATCAATTGAGATCCTTGTGCAGGAATTATGAAATTGTTCAGTCTAGGCTCGTCCACTTTCGAGAACCATCTGCAGCGACTTCCGATACCTTGGCACCAGAATTTGCGTACAAATATGCGACCAAGGCGAAATCGACCTACGACTATAAATCTAGCTATAGTTACAACAAACAGTCGTATCAACCATTAAAAATAAACAGGAACACTAATATTAATCAAAAATATCTACACAGTATTGAAGAAAGTCATCACGATGCAAGGGAAAAATTACCCTATTGTCCTAGGTGCCGCAACAATACGCATAGTTTTAGGGACTGCACTAATACGGAAGTTTTGTGTTTTAAGTGTGGTCGCAAGGGAGTTAAGAAACCTGAGTGTTCACATTGTACTGGCAAACAGGCTCCAAAAAAACTAAATTTGCAGAATTGTAGCAAACCATTGTCCCTGGAACATGTAAAGATACACCGTACCAGCCGGGATGAATGGAAGAATTGGTTAAAAACAATTAGTTTATTTTTTAATGGCTACAAGGTTGCTTCAATTCTGCATACAAAACCAACTAACGATAAAAGACCCTATGTTAATATTAAGATACACGATTTGACAGTTTCCGGCCTTTTGGATTCAGGCTCAGCGGTTACTATTTTAGGCAACAATGCTCATAGTGCATTAGTTAGTCGTGGGCTGGAGTTGTGTACTGATGATAAATTGACTATTATTGCGGCTGGTGGACAAAATCTTAGAAGTATAGGCTATATTAATATGCCAGTGCATTTCGAAAACCAGTTCCACATTATTCAGAGTCACGTAGTTCCAGAAGTTCAATCATCGCTTATTTTAGGGATTGACTTTTGTCACACATTTAAAATTTGCCCGAAGTACTTGAGTTCTCTTCATTTCCCCGGCCCTCCATTGGCTAATTTAGATGTTGGTAGCCCAACCAATTTTTTGCGCTCGTATGATTATTTGGACGAATCACAAAAGGCCGTCGTTGACAATATTACCAAGCAGTTTGAAGAAATATCTTTTGAGCGCAAAGGACTTGGACGCACAAACTTAATTACTCACCACATCGACACGGGGAATTCTCCTCCTGTGAGACAGCGCTACTATAGGCTTTCACCAGAGAAACAGAGAATCCTAGTCGAGCAAGTAGACGAAATGCTCCAGCTTGATGTAGTTGAGCCTTGTGAGAGTGCCTGGCAATCCCCGGTATTGCTAGTCACTAAAAAAGATGGTCAGCCGCGGTTCTGCTTAGATAGTAGGAAGCTAAACTCTGTTACAAAACGCGACGCTTATAACTTACCTTACATATCGGAGATATTGGACAACTTGCGAGACGCGCGCTATCTTAGCAGTATTGACTTATCAAAGGCTTTCTGGCAATTACCAATAGCACTCGAAGATAGGGACAAGACGGCATTTTACGTTCCGGGACGAGGGACGTTACGGTTCAAGACTACACCGTTTGGTTTGACCAATGCGCCTTCTACGCAACAGCGGTTAGTCGATTTATTGTTTGGCGACATGGATCACAAGGCGTTCGCATATTTAGATGATGTGATAATAGTAAGTAGCACGTTTGATGAGCATGTTAGTCTTCTTCTTCGCGTGTTAGACAAGCTGCGCCATGCTAATCTAACAATTAATTTAGAAAAGTGTGAATTTTTTCGAAGTAAGCTTAAATATTTAGGCTATGTGGTCGACGCGAATGGTTTGCGGACTGATCCGGATAAAGTTACAGCCATTCTAAATTACCCAACTCCTACATGTCGTAAGGACTTGAAACGGTTCCTAGGCACGGCAACATGGTACCGGAGATTTGTCCCAAACTTTAGCACTATCGCAGGGCCGCTTAATAGGTTGACATCGAACAAAAAAATCAACAACTCCCTTCCAGTGGACAGATGA

Protein

MVFTIKFLSLQKTELEYEVAIRGETPGATVADLRKQISKLSQSFPSEDVLCSHLEPLDDLQAVLDLLNKVNASLESSPTDKSTLSRIENIFHHLYHRINRIVVDEVEKPHSACSKLFKEFYEKFQKLSKKAIDPLLIGVSSSASASVPGIQAPINVAVTCDRGVTSELSRLKFDGKSCVRSFIQRVYEFSEARSIPDSKLLSSATEIFTDDALHWFRSIKDQVSSWDDLVVLLKKGFDKTDYDYRLLAEIRARTQGETENITIYLAILSGMFARLLKSLSEEDKLEIVLHNIRPCYASTLASATEICNIDQLRSLCRNYEIVQSRLVHFREPSAATSDTLAPEFAYKYATKAKSTYDYKSSYSYNKQSYQPLKINRNTNINQKYLHSIEESHHDAREKLPYCPRCRNNTHSFRDCTNTEVLCFKCGRKGVKKPECSHCTGKQAPKKLNLQNCSKPLSLEHVKIHRTSRDEWKNWLKTISLFFNGYKVASILHTKPTNDKRPYVNIKIHDLTVSGLLDSGSAVTILGNNAHSALVSRGLELCTDDKLTIIAAGGQNLRSIGYINMPVHFENQFHIIQSHVVPEVQSSLILGIDFCHTFKICPKYLSSLHFPGPPLANLDVGSPTNFLRSYDYLDESQKAVVDNITKQFEEISFERKGLGRTNLITHHIDTGNSPPVRQRYYRLSPEKQRILVEQVDEMLQLDVVEPCESAWQSPVLLVTKKDGQPRFCLDSRKLNSVTKRDAYNLPYISEILDNLRDARYLSSIDLSKAFWQLPIALEDRDKTAFYVPGRGTLRFKTTPFGLTNAPSTQQRLVDLLFGDMDHKAFAYLDDVIIVSSTFDEHVSLLLRVLDKLRHANLTINLEKCEFFRSKLKYLGYVVDANGLRTDPDKVTAILNYPTPTCRKDLKRFLGTATWYRRFVPNFSTIAGPLNRLTSNKKINNSLPVDR

Uniprot

A0A139WG74 A0A146LWQ9 A0A146KR86 A0A3Q0JAQ4

Pubmed

18362917 19820115 26823975

EMBL

KQ971350 KYB26855.1 GDHC01007507 JAQ11122.1 GDHC01020090 JAP98538.1 + More

Proteomes

UP000007266 UP000079169

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF03732   Retrotrans_gag
PF00078   RVT_1
PF00077   RVP
PF17917   RT_RNaseH
PF00665   rve
PF09668   Asp_protease

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR041577   RT_RNaseH_2
IPR036875   Znf_CCHC_sf
IPR005162   Retrotrans_gag_dom
IPR000477   RT_dom
IPR041588   Integrase_H2C2
IPR001878   Znf_CCHC
IPR018061   Retropepsins
IPR001969   Aspartic_peptidase_AS
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR041373   RT_RNaseH
IPR036397   RNaseH_sf
IPR019103   Peptidase_aspartic_DDI1-type

SUPFAM

SSF57756   SSF57756        + More
SSF50630   SSF50630
SSF53098   SSF53098

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A139WG74 A0A146LWQ9 A0A146KR86 A0A3Q0JAQ4

PDB

4OL8 E-value=1.75596e-41, Score=429

KEGG

102466074 no KO assigned | (RefSeq) Mir3406, bmo-mir-3406; microRNA 3406

GO

GO:0005634 GO:0008270 GO:0003676 GO:0004190 GO:0015074 GO:0006508 GO:0007165 GO:0006072 GO:0009331 GO:0006289 GO:0004518 GO:0006281 GO:0048384

Length:

945

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0141

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00016

outside

1 - 945

Pi

308.261226

Theta

171.38767

Tajima's D

2.191215

CLR

21.091237

CSRT

0.910104494775261

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree