Silkworm Genome Informatics Database

Gene

KWMTBOMO02251

Pre Gene Modal

BGIBMGA003100

Annotation

PREDICTED:_intraflagellar_transport_protein_80_homolog_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr4(-):14784046-14831401 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.084 PlasmaMembrane Reliability : 1.423

CDS

ATGAAATTTAAAATTTCCTCCCACAAGGAACCAAAACACACCGGTGTAGTGGTTTGCGTTTGTTGGAATAATACAGAGGACGTATTTTCTTGCGGAGACGATCATAAACTATTAAAGTGGAATTTAGTTAATAATGAATGCTTGCCGGTAACTACTTTTCCTGATGATTTCTATCCGACTAGCATGCACTTATTTCCTAAAACTAGTCTAGGAGGCAGTAAACATCAACATGATGTCATATTGATTTCTACAGCTGATGGCAAATTTCATATAGTAAATCACAATGGACGTATAGAGAAATCGGTGACCGCTCACGAGGGGGCTTGCCTCACAGCAAAGTGGAGTCCAGACGGAGCGGGTCTTCTAACAGCCGGCGAAGATGGTTTTGTGAAGATTTGGTCTCGCAACGGTCTCCTTCGTTCAACATTGGTTCAATCGGATGTGCCATGTTTCGACGCCGTCTGGAGTCCAGACAGTAACGCTATATTGCACACAAAAGAAAACTTTCTCGTTATCAAGCATTTGAGTTCGAGCAGTAAAATTGTTAAGTGGAAAGCTCACGATGGTCTCATTTTGTGCACGGCTTGGAACGCAAATAACAATTTGGTTGTTTCCGGGGCTGAGGATGGTTTTACTAAGATTTGGGATACGTTTGGTCAGCAAATCTCGGTGAGCGTGAAACATGACCAGCCTATCACCAGCGTCAGTTGGTCTCCAGCCGGCGACATGTTCGTTGCGGGAAGTTTTAATTTGACACGTTTGTGCAATGCCAATGGTTGGTCATACTGCTTGGATCGTCCATCAACCGGCAGTATATATGACATCGCCTGGTCCATGGATGGTACCCAGTTGGCTGCGGCTTGTGCCAATGGCCATGTCATATTTGCGCATATTATTGACAGAGAATACACATGGAAAAATTACTCCTGCACACAAATTGGTCGAAAGGTCATTTCTATCAAAGACATAGTATCAGAAGAGAACGACCAGTTGGATTATCCGGATCGAGTTATACAAATATCGTTAGGCTTCAATCATTTAGTCGTAGCTACTGTCAAACAGTGCTTTATACACAAACTGAGCTCTTGGAATACACCAGTGACTTTCGATCTTAAAGAAGGCACTGTAAGCATGATATTACTGTCCGAAAGATGCCTGTGCGTTGTAGAAAGAGCTGGAATTTCAGTTTATAGTTACATGGGCAGGTTGTTGGCAAGTCCTCGTTGTGGTGGTAGATCCGAGACTCTTGGCAAATCTTCTGTGTCTTTAGGACCCGATACATTGGCTGTCGTTGATCAAACCGATCGCAAATTGATTCACGTTTTCGATCTTCCAACCGGTCTCATTGTGCGTAGTTCAACAGACAGCACGGTAACCAAACTCAACCACAAAATGACAGTGTCAACTATTGCTCTGAGTCAGACAGGACCAATTAACGACCGACAAATGGCTCTTTTGGACTACAATAAAGACCTATACGTAGTCTCCGTGAAAGATGTTAAGCCGAAGTTTGTTAAATTAGGATCTCAAGTACTAAGCGTCGTTTGGAGCTCAGAGACAGAATTGCTAGTTGGACTACGCGCCAACGCCATTGTGGCTTGGTGCTGCCCTAGGGCTGTCCAATTAGACTGGCTGGTTCTTACTACTGTCAGTAAGGAAGTCACGGATCTGGGACGCAACCCGTGTATCCTAAGCGAAGAAGATGGCATCGTTCGTATATGTAAGGGTAATGGCTCGGTTGTTCACATATCAATCGCAGCTTTCCAAGAGAAATTACTGAAGTATGTGTCAACGAACATGTGGCAAGATGCTCTACAGCTCTGTCGCACTGTTGAAGACGAAACGTTATGGGCATGTCTCGCGGTGCTGGCATGGCAACACCATCAGCTGCCGGTGGCAGAAGAGGCCTTTGCTCTGATACGCCAATACCATCAAGTTTGCTATATCCAGCACTTAAGGAGCAATGTACCAGAAAAGCTGAGTGCAAGCATTGTTGTAGTGTTATTTTTAAATGTGCGTTTTTTCGCAAACTGTAATGTGTACGATAATGAGATAAACGAACATTCCTTGGAGTTGACCCAGTCCTTGAACTTGGCTCGACAAGAACTCATCCAAGAGGCTTGCCGACGTTTTTCTCGCAACTACAAATTGGATGACCTGCAACCGGACCAGTTAAGGCATATATTGGTTGATGATGAAAGGAAACTGCTATATTGTTATGTGCCAAAGGTGGCCTGTACTAACTGGAAGAGACTTCTCCTCATATTGGCTGGTAAATGGAATAACACAGATGTTCTATCAATTCCGGGGCATATACCTCACTTACCCGGAATGTTCAAGGATCTCAGCATGGTGACTGCACAGGAACGCGAACACATGCTAAATAATTACCATAAGATGGTGTTTGTTAGGAATCCATTTGAAAGATTACTGTCGGCTTATAGAAATAAACTGGAGGGTGATTCACCAAGTCAATATTTCCAGGAACACGTTGGAAGGCGGATAATAAAAACGTACCGCGAGAACCCCTCAAACCAGTCCCTTGAATTTGGCAATGATGTCACTTTCAAAGAATTCGCCATGTTCCTGACGAACAAATCGGAGGAGTTGGCCGATGTCGTCAACAACGAACACTGGCAGCCGATCACCGATCTATGCCATCCGTGTCAAATAAAATACACATTAGTTGGTAAATACGAAACTCTCCTGGACGACGTTCTCCTAGCTCTGCACACGATCCAAGTAACTGGAGTGAATTTCCCGAGACTGACCAGCACCTCGGGCACCGCACAGAAACTCCACAAGTACTACTCGCAGCTAGACTTACCGCTGATAAGGAGGTTATACAAACTATATAAATACGATTTCAAAATATTCGATTACCATTTAGATAGTTTAGTCGGTTTTGATCTAGATTGA

Protein

MKFKISSHKEPKHTGVVVCVCWNNTEDVFSCGDDHKLLKWNLVNNECLPVTTFPDDFYPTSMHLFPKTSLGGSKHQHDVILISTADGKFHIVNHNGRIEKSVTAHEGACLTAKWSPDGAGLLTAGEDGFVKIWSRNGLLRSTLVQSDVPCFDAVWSPDSNAILHTKENFLVIKHLSSSSKIVKWKAHDGLILCTAWNANNNLVVSGAEDGFTKIWDTFGQQISVSVKHDQPITSVSWSPAGDMFVAGSFNLTRLCNANGWSYCLDRPSTGSIYDIAWSMDGTQLAAACANGHVIFAHIIDREYTWKNYSCTQIGRKVISIKDIVSEENDQLDYPDRVIQISLGFNHLVVATVKQCFIHKLSSWNTPVTFDLKEGTVSMILLSERCLCVVERAGISVYSYMGRLLASPRCGGRSETLGKSSVSLGPDTLAVVDQTDRKLIHVFDLPTGLIVRSSTDSTVTKLNHKMTVSTIALSQTGPINDRQMALLDYNKDLYVVSVKDVKPKFVKLGSQVLSVVWSSETELLVGLRANAIVAWCCPRAVQLDWLVLTTVSKEVTDLGRNPCILSEEDGIVRICKGNGSVVHISIAAFQEKLLKYVSTNMWQDALQLCRTVEDETLWACLAVLAWQHHQLPVAEEAFALIRQYHQVCYIQHLRSNVPEKLSASIVVVLFLNVRFFANCNVYDNEINEHSLELTQSLNLARQELIQEACRRFSRNYKLDDLQPDQLRHILVDDERKLLYCYVPKVACTNWKRLLLILAGKWNNTDVLSIPGHIPHLPGMFKDLSMVTAQEREHMLNNYHKMVFVRNPFERLLSAYRNKLEGDSPSQYFQEHVGRRIIKTYRENPSNQSLEFGNDVTFKEFAMFLTNKSEELADVVNNEHWQPITDLCHPCQIKYTLVGKYETLLDDVLLALHTIQVTGVNFPRLTSTSGTAQKLHKYYSQLDLPLIRRLYKLYKYDFKIFDYHLDSLVGFDLD

Uniprot

A0A2W1BNV4 A0A212FKN3 A0A0N1PFV5 A0A2I4CTM7 A0A3B4WVD2 A0A2L2YIL1 + More
A0A093D2A1 A0A091XPV0 F1PNI0 A0A091MZB8

Pubmed

28756777 22118469 26354079 26561354 16341006

EMBL

KZ150000 PZC75314.1 AGBW02008010 OWR54303.1 KQ461183 KPJ07571.1 + More
IAAA01020474 LAA07968.1 KL472004 KFV19214.1 KK735627 KFR15011.1 AAEX03017331 KK522225 KFP66840.1

Proteomes

UP000007151 UP000053240 UP000192220 UP000261360 UP000053605 UP000002254 + More

Pfam

PF03567   Sulfotransfer_2        + More
PF00400   WD40
PF07676   PD40

Interpro

IPR017986   WD40_repeat_dom        + More
IPR036322   WD40_repeat_dom_sf
IPR005331   Sulfotransferase
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR001680   WD40_repeat
IPR019775   WD40_repeat_CS
IPR011659   PD40

SUPFAM

SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

A0A2W1BNV4 A0A212FKN3 A0A0N1PFV5 A0A2I4CTM7 A0A3B4WVD2 A0A2L2YIL1 + More
A0A093D2A1 A0A091XPV0 F1PNI0 A0A091MZB8

PDB

5N4A E-value=3.88953e-114, Score=1056

KEGG

101739045 K19678 intraflagellar transport protein 80 | (RefSeq) intraflagellar transport protein 80 homolog

GO

GO:0008146 GO:0016021 GO:0031514 GO:0008104 GO:0060271 GO:0060026 GO:0060042 GO:0005929 GO:0045880 GO:0050680 GO:0030992 GO:0060349 GO:2000051 GO:0005813 GO:0002062 GO:0001649 GO:1905515 GO:0007224 GO:0005515 GO:0006072 GO:0009331 GO:0005634 GO:0006289 GO:0004518 GO:0006281 GO:0048384

Length:

972

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00891999999999999

Exp number, first 60 AAs:

0.00035

Total prob of N-in:

0.00009

outside

1 - 972

Pi

201.324835

Theta

172.024504

Tajima's D

0.785832

CLR

0.304256

CSRT

0.59702014899255

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics