Gene

KWMTBOMO02238

Pre Gene Modal

BGIBMGA003047

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_25_[Papilio_machaon]

Location

Bomo_Chr4(+):14489036-14491923      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.94

CDS

ATGACGACGACAGCTAAGGCGTCAATACTGACGCCTCTTCACACACCTTACATAACCAATACCGAACAAAACTCAAGTATGATGGAAAGCGACGATAACGCTAAAGCACAGGCCAGATCTATTCTTGGTCCAACTAAAGATGCCGAATTCCTGCAAAGTTTCGTCCGCGTTGGCATCGGTGATGAGGAAGATGAAGTTCCAATACCGAAAGCTTCTATCAGCAAGAGAGCTCCTCAGTCCGCCGACAAGGCTCGTGAATTTGAAACGGAGGAAGAGAAACATTCGACGAAGGACCGGAAGAGTTCTATAAAACCGCATAAGAGACGTGAACGAAAACAGAAACGCGAGAAACGTAGACGCGAAGAAGAACTATACACTGATAAAGATCGGGCCGCCGCTGTGGTCATGGGTTCTAAAGACATTAAACAGTCTCTGAGCTTAAAGGACAAGGCCGAACGTAGCAGCGCCTTACAGCTGCCTGCAGAAGCAGACGCCGGCACACTGTTAGCGTTAGCACAGGCTGAGATGATGCGGAAACGTTACCGAACCGCTGTCTTATTTGTAAATAAGGCAATAGAACTAGCTCCAGAAGAGAAGGCTGCCTACGTCGCCCGCAGCAAATGCTACCTCCTACTTGGAGAACCACGGTCAGCTCTCAGCGATGCAGAAGCAGCTCTAAAGTTTGACCCTAAAGATGCAAAGGCGCTACTTCGCAAAGCCGAAGCGTTATACTATTGCGGAGAATTCGAAATGAGTCTTGTGCATTATCACAGAGGACTGCGGGCTAGACCAGATCTGAATGACTTCAGGCTCGGTGTACAGAAAGCTCAAGAAGCCATTGAAAACACAATCGGAGCGGTCAAAGTAGTGAAGAAATCTGGTAAGCGCTCATCATCAAAGTCTTCAAGGCCAGTGCTAGGGCAACTGATGTCGGATAAAGTATACCTTGAGAATCTGATAAAGAATCCAGACTTGGCTATAGCGGATAAAAAGAACGATAAGGTGTTGAAGCAAGCAGAAGAGGCTATCAGGTTCTTAGAAAACCGGGAAGAATTCTGGAGACAGCAACAGACTGCTGTGTAG

Protein

MTTTAKASILTPLHTPYITNTEQNSSMMESDDNAKAQARSILGPTKDAEFLQSFVRVGIGDEEDEVPIPKASISKRAPQSADKAREFETEEEKHSTKDRKSSIKPHKRRERKQKREKRRREEELYTDKDRAAAVVMGSKDIKQSLSLKDKAERSSALQLPAEADAGTLLALAQAEMMRKRYRTAVLFVNKAIELAPEEKAAYVARSKCYLLLGEPRSALSDAEAALKFDPKDAKALLRKAEALYYCGEFEMSLVHYHRGLRARPDLNDFRLGVQKAQEAIENTIGAVKVVKKSGKRSSSKSSRPVLGQLMSDKVYLENLIKNPDLAIADKKNDKVLKQAEEAIRFLENREEFWRQQQTAV

Uniprot

H9J0L0   A0A2H1VSJ4   A0A212F3R0   A0A194PMD9   A0A0N1INK6   A0A2A4K1G6   + More
A0A0L7K683   A0A139WH21   Q16XW2   Q16XW3   A0A1S4FKA2   N6U9S8   A0A1B0D505   A0A1I8MIL3   U4UTW3   W8BVU3   A0A1I8NZK3   A0A182HA69   A0A0L0BTS9   A0A1A9WXJ9   A0A1A9XVZ0   A0A1J1J814   A0A2J7Q0L4   A0A1B0FPF7   A0A1A9UXH8   A0A1B0AP32   B4MP52   A0A182FTE1   B4J8J9   I5AQ03   A0A1A9Z7P3   A0A1W4V002   B4KMV7   B4I7Z6   Q9W295   B4QH17   B3NNC5   B4P8B0   B4GHB0   B3MBH7   A0A0M5J254   A0A0M3QVQ0   A0A182P9C2  

Pubmed

19121390    22118469    26354079    26227816    18362917    19820115    + More
17510324    23537049    25315136    24495485    26483478    26108605    17994087    15632085    23185243    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    17550304   

EMBL

BABH01010259    ODYU01004191    SOQ43789.1    AGBW02010507    OWR48376.1    KQ459598    + More
KPI94601.1    KQ461183    KPJ07562.1    NWSH01000324    PCG77472.1    JTDY01010271    KOB58903.1    KQ971343    KYB27145.1    CH477530    EAT39482.1    EAT39481.1    APGK01037633    KB740948    ENN77401.1    AJVK01025023    KB632364    ERL93595.1    GAMC01013271    JAB93284.1    JXUM01122155    KQ566574    KXJ70016.1    JRES01001352    KNC23383.1    CVRI01000074    CRL08098.1    NEVH01019965    PNF22128.1    CCAG010008034    CCAG010008035    JXJN01001122    CH963848    EDW73891.1    CH916367    EDW01266.1    CM000071    EIM53038.2    KRT02958.1    CH933808    EDW09879.1    CH480824    EDW56721.1    AE013599    AAF46797.1    CM000362    CM002911    EDX08163.1    KMY95705.1    CH954179    EDV55549.1    CM000158    EDW91150.1    CH479183    EDW35880.1    CH902619    EDV37108.1    CP012524    ALC40468.1    ALC42441.1    ALC42789.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000218220    UP000037510    + More
UP000007266    UP000008820    UP000019118    UP000092462    UP000095301    UP000030742    UP000095300    UP000069940    UP000249989    UP000037069    UP000091820    UP000092443    UP000183832    UP000235965    UP000092444    UP000078200    UP000092460    UP000007798    UP000069272    UP000001070    UP000001819    UP000092445    UP000192221    UP000009192    UP000001292    UP000000803    UP000000304    UP000008711    UP000002282    UP000008744    UP000007801    UP000092553    UP000075885   

PRIDE

H9J0L0    Q9W295   

Pfam

PF13181   TPR_8

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR040111   TTC25       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9J0L0   A0A2H1VSJ4   A0A212F3R0   A0A194PMD9   A0A0N1INK6   A0A2A4K1G6   + More
A0A0L7K683   A0A139WH21   Q16XW2   Q16XW3   A0A1S4FKA2   N6U9S8   A0A1B0D505   A0A1I8MIL3   U4UTW3   W8BVU3   A0A1I8NZK3   A0A182HA69   A0A0L0BTS9   A0A1A9WXJ9   A0A1A9XVZ0   A0A1J1J814   A0A2J7Q0L4   A0A1B0FPF7   A0A1A9UXH8   A0A1B0AP32   B4MP52   A0A182FTE1   B4J8J9   I5AQ03   A0A1A9Z7P3   A0A1W4V002   B4KMV7   B4I7Z6   Q9W295   B4QH17   B3NNC5   B4P8B0   B4GHB0   B3MBH7   A0A0M5J254   A0A0M3QVQ0   A0A182P9C2  

PDB

4JA9     E-value=7.63506e-06,     Score=118

KEGG

101738408    no KO assigned | (RefSeq) tetratricopeptide repeat protein 25

GO

GO:0005737   GO:0005515   GO:0006811   GO:0016020   GO:0003697   GO:0004519   GO:0005634   GO:0006289   GO:0004518   GO:0006281   GO:0048384  

PANTHER

PTHR23040  

Length:

360

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00236

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.02901

outside

1  -  360

 

 

Pi

19.349675

Theta

22.055734

Tajima's D

-0.744183

CLR

0.803488

CSRT

0.186790660466977

Interpretation

Uncertain