Silkworm Genome Informatics Database

Gene

KWMTBOMO02237 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003046

Annotation

PREDICTED:_cyclic_nucleotide-gated_cation_channel_beta-3_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr4(+):14456126-14478912 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.606 PlasmaMembrane Reliability : 1.699

CDS

ATGGTTTTTGACGGGCTAAAGCTTATGAAAGGGCACACAGTTCATCCTTCAACATCAGACCGTGATGCTAAATATGGAACTAAGACCCCATTGGCCCGTGGGCCGTATGGTTCTTGGTGTACGCCAGAGACCTCGCCCATTCATCACCCGTTGACGCAAACAAACTCGAACATCGAAACAAAAACTCAGCTTCAAGATCAGAAACGGTTTCTAGAAGCGAACAGTACTGTCTTCCCGCTGCAGAAAGTCAGACTTTTCTCTACAAGCCCTCCTCCAGACTATATTTCGAGCATAGAAGATAAAAAGGCCATAACTGAACTCAAAGAGCTAAAAAAAAACTACATCACCAAAACAACTTCTGGTGATAAACCACCGCCAATTCAAGAGGAACCGGATTGCGAACCGGAGTATCCGCAGAGTCCTATACCAGCCTCCCCGACGCGGTACACGAAATGCAAGGGATTCCTTCTATCCACATTTTGCGATCCGTACATGCCAATCGATCCTCAAGGTCGTCTCTACATAGGATGGCTCTGTCTAGTAACATTCTGCTACAGTTACAATGCTTGGGGGATAGCTCTACGCTCTACATTCCCTTACCAAACACCAGAAAATACGCCCATGTGGTTGGCAGCCGACTATTTCAGTGATCTAGTGTATCTGTTGGATGTCGCATTCGTGAAGCCAAGGTTGATGTACTTACACGAAGGGTTCTGGGTCGATGACCCCGTCGAAACCAGGAAAAATTATAAAAGGAAGGTTCAATACAAGTTCGATGTCATCTCGCTCACACCCCTGGACGTGCTATATTTCTATTTCGGCACGCAGAAAGCGATCCTCCGGTTCCCGAGGTTGCTAAAGCTGCAAACGTTTTGGGAATTCAATCAGGCGATGGATCGAGTGCTTGCCTCGCCCTACGTTGTCCGTATAGGCAAGACATTGTGCTACATATTCTACTTGATCCACTTGAACGCGTGCGCGTATTACGCGATGAGCGACCACATCGGGCTCGGTTCGAACGGTTGGGTTTACGACAACGAAGGCATCGCCTACATCAGATGCTTCTACTTTGCAACTAAAACGGCCACGTCCATCGGGAAGAATCCGAAGCCGGAGAACACGATCGAGTACCTGTACATGACCGCGGCCTGGCTGATGGGCGTGTTCGTGTTCGCTCTGCTCATAGGCCAGATCCGGGACATCATCGCGACCGCAACAAGGGCCAGGACAGAGTACCGCAAGGCGCTGGACGGGTGCGCGCGCTACCTGCGGCGACTCAACCTGCCGGCCGCGCTGCAGCGCCGCGTCACGCTCTGGTTCAACTACACCTGGAGTCAGCAGCGATGCTTCGACGAGGCCAAAATACTGAACTGGCTTCCGTCGAACATGAAGCGGGACGTGGCGTTGGCCGTGCACATGTCCACGCTCAGCAAGGTGCAATTGTTTCGTGACTGCTCGGACTCTCTACTCCGCGACTTGGTGCTCCAGCTGAGACCCGTATCGTTCCTGCCCGGGGACCTGGTCGTGAGGAGCGGAGACGTGGGGCACCAGATGTACATCATCAAGACCGGAGAGTGCTGTGTAATGTCCCAGGACGAGACCGAAGTGCTGGCGACGTTAAGGGAAGGATCCGTCTTTGGAGAAATCAGTTTATTGGGCATCGAGGGACTGCGACGGCGGACGGCCACAGTTCGGTCGCGTGGATATTCGTCCCTGTTCGCGCTCTCCCGTAGCGACTTGGACGCAGCTTTAGAGTACCACAAAGAAGCAGCCAAGGTTCTCCGCATAAGGGCGGATCAAATCATCAGGGAGAATGCAGCAAGACAAACCAAACAGAGGCTCGCTGCGTTGGAAGCCAGGAAATCCGCTGAACTAGCGAAAAGACAGGAATCGGCGCTTAGAAGGAAATCTACCGTCTCTGGTCACAGCAATGCCACTGAAGGACGGAGACTGAGGGCTCCCAGTGCGACCTCCAAGCGAAGGTTGTCCACTGTCTCCGAGAAGAAGAATCCTCGGGCGAGAGGCTATCGAACTTTGGCATCGACGTGCACCGGAATACGGACTCCGCTGCCTACCATTGTATTTACAGCTGAATAA

Protein

MVFDGLKLMKGHTVHPSTSDRDAKYGTKTPLARGPYGSWCTPETSPIHHPLTQTNSNIETKTQLQDQKRFLEANSTVFPLQKVRLFSTSPPPDYISSIEDKKAITELKELKKNYITKTTSGDKPPPIQEEPDCEPEYPQSPIPASPTRYTKCKGFLLSTFCDPYMPIDPQGRLYIGWLCLVTFCYSYNAWGIALRSTFPYQTPENTPMWLAADYFSDLVYLLDVAFVKPRLMYLHEGFWVDDPVETRKNYKRKVQYKFDVISLTPLDVLYFYFGTQKAILRFPRLLKLQTFWEFNQAMDRVLASPYVVRIGKTLCYIFYLIHLNACAYYAMSDHIGLGSNGWVYDNEGIAYIRCFYFATKTATSIGKNPKPENTIEYLYMTAAWLMGVFVFALLIGQIRDIIATATRARTEYRKALDGCARYLRRLNLPAALQRRVTLWFNYTWSQQRCFDEAKILNWLPSNMKRDVALAVHMSTLSKVQLFRDCSDSLLRDLVLQLRPVSFLPGDLVVRSGDVGHQMYIIKTGECCVMSQDETEVLATLREGSVFGEISLLGIEGLRRRTATVRSRGYSSLFALSRSDLDAALEYHKEAAKVLRIRADQIIRENAARQTKQRLAALEARKSAELAKRQESALRRKSTVSGHSNATEGRRLRAPSATSKRRLSTVSEKKNPRARGYRTLASTCTGIRTPLPTIVFTAE

Uniprot

H9J0K9 A0A2A4K0Q6 A0A194PMR0 A0A0N1PGS0 A0A2H1VSL2 A0A212F8A3 + More
A0A0L7L8B4 A0A2J7RMM0 A0A2J7RMM6 A0A2J7RMM1 A0A2J7RMN4 A0A2J7RMM2 A0A2J7RMP2 A0A1I8MMZ3 A0A1B0CJZ5 D6WKV5 A0A1I8PNQ9 A0A067RWV9 A0A182IS67 A0A1B0EW99 A0A1Y1MYP4 T1GMQ1 A0A3B0JWH1

Pubmed

19121390 26354079 22118469 26227816 25315136 18362917 + More
19820115 24845553 28004739

EMBL

BABH01010259 BABH01010260 BABH01010261 NWSH01000324 PCG77474.1 KQ459598 + More
KPI94602.1 KQ461183 KPJ07561.1 ODYU01004191 SOQ43788.1 AGBW02009778 OWR49939.1 JTDY01002284 KOB71742.1 NEVH01002552 PNF42081.1 PNF42085.1 PNF42083.1 PNF42082.1 PNF42080.1 PNF42079.1 AJWK01015544 AJWK01015545 KQ971343 EFA04022.1 KK852415 KDR24389.1 AJVK01012214 GEZM01023314 JAV88467.1 CAQQ02181180 CAQQ02181181 CAQQ02181182 OUUW01000001 SPP75428.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151 UP000037510 + More
UP000235965 UP000095301 UP000092461 UP000007266 UP000095300 UP000027135 UP000075880 UP000092462 UP000015102 UP000268350

PRIDE

H9J0K9

Pfam

PF00027 cNMP_binding + More
PF00520 Ion_trans

Interpro

IPR018490   cNMP-bd-like        + More
IPR014710   RmlC-like_jellyroll
IPR018488   cNMP-bd_CS
IPR000595   cNMP-bd_dom
IPR005821   Ion_trans_dom

SUPFAM

SSF51206 SSF51206

Gene 3D

2.60.120.10

CDD

cd00038 CAP_ED

ProteinModelPortal

H9J0K9 A0A2A4K0Q6 A0A194PMR0 A0A0N1PGS0 A0A2H1VSL2 A0A212F8A3 + More
A0A0L7L8B4 A0A2J7RMM0 A0A2J7RMM6 A0A2J7RMM1 A0A2J7RMN4 A0A2J7RMM2 A0A2J7RMP2 A0A1I8MMZ3 A0A1B0CJZ5 D6WKV5 A0A1I8PNQ9 A0A067RWV9 A0A182IS67 A0A1B0EW99 A0A1Y1MYP4 T1GMQ1 A0A3B0JWH1

PDB

5H3O E-value=6.82807e-70, Score=673

KEGG

101738542 K04952 cyclic nucleotide gated channel beta 1 | (RefSeq) cyclic nucleotide-gated cation channel beta

GO

GO:0005216 GO:0016021 GO:0005223 GO:0030553 GO:0005222 GO:0006811 GO:0016020 GO:0003697 GO:0004519 GO:0005634 GO:0006289 GO:0004518 GO:0006281 GO:0048384 GO:0055085

Length:

698

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

73.2036400000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.17497

outside

1 - 172

TMhelix

173 - 192

inside

193 - 374

TMhelix

375 - 397

outside

398 - 698

Pi

26.155706

Theta

23.811454

Tajima's D

0.116153

CLR

0.753811

CSRT

0.403229838508075

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics