SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02234
Annotation
Pro-Pol_polyprotein_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 2.201
 

Sequence

CDS
ATGAACTTGTTAAATCGTTGCAAAATTTATGGCAAGGAAGTGGTAGACTGTTTGCTGTACGGGGTTGAAGATCGTGCCGTTAAAGTGGGTGCTCAAGCCGCTCAATTTAAGCAACCTGAGCAAGTGCTCAAATACTTTAGAACCGTGAAGAGTACCGCTAAGGAGTTGAACCTGAATATCGATGTGAGGGAAGGTATGCCGGTATTAAGAGGAATAGGAGGAAACCTGACTTGTCCTTTAGGTGTAGCTACCGTGAGTGTAGAAGTTCAAGGGTTAAAAGAAACTATTGAAATATATGTAGTAGAAGATTATGTACTAAGTTACTCTGCATTACTTGGACATTCCTTTACAGAGAAGCCTGATATTATAATGACTAAAACGCCGACTAAGATCGTATTTGAAAGACTCGCGTGTACTAAAATAAGACTCATAGTGGAAGATGACACGGAAATAGATGGTAGCGTTGTACGTCCCATAATTGTTAATGCTGATGGGCAGGGAAACGGTAGCATCTACGTCCATGGCTCGTTAAGGGGTGCTGAAGGAAAAGAGTACTATCTTTTTCCCGGTACATACGAGATAAAAGACAGCCGCACAGCGCTTTTAATTTATAATGCCTCGTCAAACAAGGTAACACATGTACTAGATGTTTTACAAATACAGCAAATCGAACAGGATTGGATTGCGACGGTACAAACTGCAGATGACGAGATAAATAAAATCAAAAGGATTCTTTCTGACCCTTCATCGGCGGAGGTAGCGGACATACACAAAAACTACAGACTGAAGAATGTCCATGTTTACCGCGTGGTAGATGCTCTATCGACAGCCAATCACGGCGGCGACGACAAGTCGTGGGACAACCACATCACTGATATACAGGTTGGTATGAACACAGCTCGACATAAAACTACCCAAAAGAGCTCCTCTGAGCTACTATTTGGATTTAACATAATTAATAGAACGGAAAGCATACTTAGTACGGTAATCAATGACACCCTAAATAGGACTCCCATTGAGGAATTGGCGGAAGTCAGACAACAGGCTAGTAAAAAAAAAAAACAGCAACAAGTTAAAGATGCAGTCAATTTTAATAAGCATAGGAAACCAGCGAGGCAGTACCAAGAAGGTGATTTAGTACGCTTAGCAAGGCAGGCTCCGCACGATGGAAAATCTCAAAAGCTCTCTGTTAAGTACCAAGGCCCTTATCGTATACTAAAGGTTCTTCCCAATGATAAGTTCGTGGTAGAAGATATACCAATGACTCGCAAAAAAGGTAGAAGGTATGAAGCAGTTGTATCTATTGATAAGATTCGGCCTTGGATGTCGTTCTGTAGAGAATTAGAGTCTGATGAATCTAGTTATAGTGTTGATGACAGTGATTAG
Protein
MNLLNRCKIYGKEVVDCLLYGVEDRAVKVGAQAAQFKQPEQVLKYFRTVKSTAKELNLNIDVREGMPVLRGIGGNLTCPLGVATVSVEVQGLKETIEIYVVEDYVLSYSALLGHSFTEKPDIIMTKTPTKIVFERLACTKIRLIVEDDTEIDGSVVRPIIVNADGQGNGSIYVHGSLRGAEGKEYYLFPGTYEIKDSRTALLIYNASSNKVTHVLDVLQIQQIEQDWIATVQTADDEINKIKRILSDPSSAEVADIHKNYRLKNVHVYRVVDALSTANHGGDDKSWDNHITDIQVGMNTARHKTTQKSSSELLFGFNIINRTESILSTVINDTLNRTPIEELAEVRQQASKKKKQQQVKDAVNFNKHRKPARQYQEGDLVRLARQAPHDGKSQKLSVKYQGPYRILKVLPNDKFVVEDIPMTRKKGRRYEAVVSIDKIRPWMSFCRELESDESSYSVDDSD

Summary

Pfam
PF00098   zf-CCHC        + More
PF17919   RT_RNaseH_2
PF14392   zf-CCHC_4
PF17921   Integrase_H2C2
PF00078   RVT_1
Interpro
IPR036397   RNaseH_sf        + More
IPR021109   Peptidase_aspartic_dom_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR012337   RNaseH-like_sf       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
SUPFAM
SSF50630   SSF50630        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
461
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0499700000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01082
outside
1  -  461
 
 

Population Genetic Test Statistics

Pi
388.296102
Theta
245.214193
Tajima's D
0.612149
CLR
107.097884
CSRT
0.552722363881806
Interpretation
Uncertain
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