Silkworm Genome Informatics Database

Gene

KWMTBOMO02230 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003045

Annotation

PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(+):14352236-14357810 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.002

CDS

ATGGGAGTCACTGGATTGTGGCGGTTGATTGAACCGACAGGAAAGCCAGTTCCAGTAGAAACGTTGGAAAATAAGGTTTTAGCTGTTGACATCTCAATATGGTTGCACCAGATGGTGAAAGGTTACCAAGATGCCAAAGGAGCCCCTTTAGCAAATGCTCACTTGATGGGCTTGTTCCAACGGCTTTGCAAACTTCTCTACTTCAGGATAAAACCAATTTTCGTCTTTGATGGTGGCTTTCCAGACTTGAAGAAAGAAACAATTTCTAAAAGACAAGATCACAAGGCGAAATATAATTCAGAATCTGAAAGAATAAAGAGAGAATTAGCTCTTCTTTTAAGCAAAAAAACTGCTATCAACAGTTTGCTTGGAAAGCAGATTTCACCAAAAAAGAATGTAGCTCAAACTGAAAATGAAGATAATATATTCAAATTGCCAGAACTCCCGAAGAAGAACCAGGAGAGTGAATCAGATTCTGAGGAAGAAAGTTCAAGTGGCTCCTCTGTTGATCTACATTCAATGGATCTAAACTCTGAACATTTCAAAAACATGCCTCTTAAAGAGAAGTATGATCTACTTGTAGAGTTAAAAGAAACAAGAAAAATGAATTCTTGGGGAAGATTACATGAATTACCAAAGAAAAGTGACAGTTTTTCTGATTTCCAGATGCAAAGATTGTTAAAACGAAGGAAACTACAGGAATGTTTTGAAGAAACTGAGAAAGAAATGGGTGTTACAGGAATGTCATTAAAAGATTTAGAATCACTACTTAACGAGGAAGGTATTGATACTAATGTTGATACATTACCGACAAAAAGAATAGCGTCCAATGATAATACAAGATTCTTACTTATAAATAACATAAAGCAAGCTTTAGCTGAAGCTAAGCAAAGAAACGACGCCAAAGATCAAGCAAGCACGAGTAATAGGGTAGAAGAAATAAATATTGAAAAAGAAAAGTCACCAGTTAAAGATGAACTTGAATGTGATTTAGAGATGGCCATTAAAATGTCTATGGAATGTGTAAGTGAAACTGACACAGCTACTTATAATTCGAAGACTGATGATTCTTGGACATCCTGTTTAACTGATACAGATTATTCAGACTCTGAAGATGAATATGAAGTACCAGATATGTCAACAGCAAAAGCTTATATCATGCAGTATAGTGATTTCACTAATATTGCTATTGAAAAACTTGTTTCAGAAAAAAGTAATAATAAAAATAAAGCTCATGCTTCCAAATTAGATGAAATATTAGAAGAAATAAATAGAGAGAAAGCATTAATTGAAAGTAAATTAGAAATATCATCTGAAGAAGACAATAAAGTTCAAGATATTGACCTTACTTCAGATTGTGCTGAAACTGTTCCTGTGCAAAAAGACAAAGAGCCTGCAGTAGAAGCATTCAGTGTAGAATTAAAACAAAATCATAAAGTAGAGGCTGCTGATGGTGTTGTTGAGGATAGCAAAGAAATTGGTCAGCTTACAGTTCTGAATGTAAGTGATAAAGAACAAAATATCGATATTATTGAAAGAAAAGAAATGCCAATAAAAGCTATTGATTCTTCGCAATCCTCAGTAATTTGTATTCACAGTTCTGATGAGGATATTTTATCTTTTGATGTAGAAAACACTGATAAACGCAATCCTGAAATATCCAAGGATTCTGAATCGGATGAAGACGATTTTGAGGACGTGCCGGAAATAAATTCTAATCCCAAAACTGTTGTGCAACTAATATTAAATACCAATACTATACCAGATAAGAATGATCTGTTTGCAGATATCTTTGAGAATACAGAGGCTGTAGATGTTCATGTGGAAACTGAAAAAGTGGAACAAAAAGGGCGCAATGAACTAAAAAGTGATATACGCGATCAATTAAAAGTTGTAACCGATGACACGACCAAAAACGAGTTTAGAAAAGAGAGCACAGAAGTAGTAGAGACTAATTTACAAAATGAAACAGTAAATTGTATTATTCAGCACGAAAATGACGAAAAAGCTACTAATTCGGACAAAAATCTGAAACTTTTACAAGAGAGAACTGTAGTCAAAGAGCCGATATCAACTGAAAAGTTGAATACAATCGTAGGTGAGATTCAGTCAAAAGAAAATTCTCTAATACAAGAGAAAGGTCGATTAGATCGTGTTGGTAGAAACATAACAGAACAGATGACTAAAGAAGCTCAGGAGTTACTGCAAATATTCGGAATTCCTTATATCGTCGCACCAATGGAAGCAGAGGCACAGTGTGCCTTCCTTGAGACCATTAATCTAACTGACGGAACAATCACAGATGATAGTGATATTTGGCTATTTGGGGGTAGAACTGTGTACAAAAATTTCTTTAATCAAAAGAAACATGTTCTACAGTTTTTAGCTGACAGAATAGAAAAATCATATAACTTAAGTCGTGAGCAGCTTGTTTTACTAGCTCTGTTAGTGGGCAGTGACTACACTACCGGGGTGTCTGGAGTAGGTCCAGTCACCGCACTAGAAATCTTAGCGTCTTTTCCTTTCAACAAAAAGCAATCGAATGAAAGCGTTAAGAAATCGCGATATGCCGAAATGGTGGCTGGCTTACAAGAATTTAAGGTGTGGGTGCGTGCCGGGAGAAGAACAGATAATATTAGCTTAAAGAAAAAACTGAAGAATGTGAATTTGTCCGAAGATTTTCCCAGTGTTCGCGTTGTACAAGCATACTTAGAACCGAATGTTGAAAAAAGTAATGAAAAATTTACATGGGGTGAATTAGACATCACAATACTTCGAGATTATACAAAAGAGAAATTTGGTTGGTCACAAAATAAACTCGACGAAATAATTAAACCAGTTTTAAAAAGAATGCAAGAGAAGAAACTGCAGAGGTCAGTTGAAGATTATTTCAAGAAAAATGTCAACTTGCAATCTTTGGAGGATCAAATGAGCAAAAGGGTGAAAGCAGCGGTACAGAAAATGGGACCGAATATATTAAATACACTTGAAGACCTTATTCCGAGTACACAAGTTCAGGCAACAATTGCTAAGAAAAGAAAGAAAATAAAAAATGAATCAAATAAATCAGGCCCTACACAGCCTAAGTTGAAGAAAAATCTAGAAGAAAAGCTCCTCATTAGTCAGGGGGTAAAAGTCATTTCAGAAACCAGTGAAGGTAGAACGAAAAAAATTGAAATACAAATTCCTAAAACGGACCGAGTTCAAGAAATCATTCCACAGAGAGAGAAAGAGAAACAGAGCTTATTGCAGAATAAATTGAAGGCTATTGAAATATTCAGGAAGACCAAAATCGATCGCAAGAAAAAAGCTTTTAAAAAGAAAGTTATATTACCAAAAAACGATGCAGAACTCTCAGAAACTGATAGTGAATAA

Protein

MGVTGLWRLIEPTGKPVPVETLENKVLAVDISIWLHQMVKGYQDAKGAPLANAHLMGLFQRLCKLLYFRIKPIFVFDGGFPDLKKETISKRQDHKAKYNSESERIKRELALLLSKKTAINSLLGKQISPKKNVAQTENEDNIFKLPELPKKNQESESDSEEESSSGSSVDLHSMDLNSEHFKNMPLKEKYDLLVELKETRKMNSWGRLHELPKKSDSFSDFQMQRLLKRRKLQECFEETEKEMGVTGMSLKDLESLLNEEGIDTNVDTLPTKRIASNDNTRFLLINNIKQALAEAKQRNDAKDQASTSNRVEEINIEKEKSPVKDELECDLEMAIKMSMECVSETDTATYNSKTDDSWTSCLTDTDYSDSEDEYEVPDMSTAKAYIMQYSDFTNIAIEKLVSEKSNNKNKAHASKLDEILEEINREKALIESKLEISSEEDNKVQDIDLTSDCAETVPVQKDKEPAVEAFSVELKQNHKVEAADGVVEDSKEIGQLTVLNVSDKEQNIDIIERKEMPIKAIDSSQSSVICIHSSDEDILSFDVENTDKRNPEISKDSESDEDDFEDVPEINSNPKTVVQLILNTNTIPDKNDLFADIFENTEAVDVHVETEKVEQKGRNELKSDIRDQLKVVTDDTTKNEFRKESTEVVETNLQNETVNCIIQHENDEKATNSDKNLKLLQERTVVKEPISTEKLNTIVGEIQSKENSLIQEKGRLDRVGRNITEQMTKEAQELLQIFGIPYIVAPMEAEAQCAFLETINLTDGTITDDSDIWLFGGRTVYKNFFNQKKHVLQFLADRIEKSYNLSREQLVLLALLVGSDYTTGVSGVGPVTALEILASFPFNKKQSNESVKKSRYAEMVAGLQEFKVWVRAGRRTDNISLKKKLKNVNLSEDFPSVRVVQAYLEPNVEKSNEKFTWGELDITILRDYTKEKFGWSQNKLDEIIKPVLKRMQEKKLQRSVEDYFKKNVNLQSLEDQMSKRVKAAVQKMGPNILNTLEDLIPSTQVQATIAKKRKKIKNESNKSGPTQPKLKKNLEEKLLISQGVKVISETSEGRTKKIEIQIPKTDRVQEIIPQREKEKQSLLQNKLKAIEIFRKTKIDRKKKAFKKKVILPKNDAELSETDSE

Uniprot

H9J0K8 A0A212F6C9 A0A0N0PB12

Pubmed

19121390 22118469 26354079

EMBL

BABH01010279 BABH01010280 AGBW02010058 OWR49278.1 KQ461183 KPJ07557.1 + More

Proteomes

UP000005204 UP000007151 UP000053240

PRIDE

H9J0K8

Pfam

PF00752 XPG_N + More
PF00867 XPG_I

Interpro

IPR006085   XPG_DNA_repair_N        + More
IPR019974   XPG_CS
IPR006084   XPG/Rad2
IPR008918   HhH2
IPR036279   5-3_exonuclease_C_sf
IPR006086   XPG-I_dom
IPR029060   PIN-like_dom_sf
IPR001044   XPG/Rad2_eukaryotes
IPR003903   UIM_dom

SUPFAM

SSF88723 SSF88723 + More
SSF47807 SSF47807

ProteinModelPortal

H9J0K8 A0A212F6C9 A0A0N0PB12

PDB

4Q10 E-value=6.97758e-44, Score=451

KEGG

101739752 K10846 DNA excision repair protein ERCC-5 | (RefSeq) DNA repair protein complementing XP-G cells

PATHWAY

03420 Nucleotide excision repair - Bombyx mori (domestic silkworm)

GO

GO:0006289 GO:0004519 GO:0005634 GO:0003697 GO:0003677 GO:0003824 GO:0016788 GO:0004518 GO:0006281 GO:0048384

Subcellular location

Nucleus

Length:

1124

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01811

Exp number, first 60 AAs:

0.00182

Total prob of N-in:

0.00027

outside

1 - 1124

Pi

222.113239

Theta

153.355056

Tajima's D

-0.675391

CLR

0.778232

CSRT

0.200789960501975

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics