Gene

KWMTBOMO02210

Pre Gene Modal

BGIBMGA003121

Annotation

PREDICTED:_TATA_box-binding_protein-like_protein_1_[Bombyx_mori]

Location

Bomo_Chr4(-):13944717-13951341      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.569

CDS

ATGGCGACGCTCATCCAAGAGAATGGTATTAAAGAGCTGAGCAAGGGCACCCACGGGGTAGTGGCAAACCATGGCATATCCACACACAGTGTCCCAACACATATGGTGCCAGACCATGAATATTGCGAGACGACCGCACAGACTCCGTCTCAGCGACAGGCTATCACTGAGCTTGCACCGACACAGCCCGCCGTTGATGAAGAAGAGGAGACTCCAGAAATTGATATCATGATAAACAATGTCGTGTGCAGTTTTAGTGTTAAGTGCCACTTGAACTTGAGACAGATTGCATTGAATGGTGTTAATGTAGAATTTCGACGTGAGAATGGGATGGTAACGATGAAGTTGCGCCGGCCGTACACGACGGCTTCGATTTGGTCGTCAGGACGCGTGACGTGCACGGGCGCCACCAGTGAAGATCAAGCCAAGATTGCTGCTCGACGTTATGCACGCGCCTTACAGAAACTCGGCTTTGAAGTGCGCTTCCGCAACTTTCGTGTAGTCAATGTATTAGGAACATGTAGAATGCCATTTGGCATACGGATCATATCTTTCTCCAAAAAATACAAGGAAGCAGACTATGAACCAGAACTGCACCCCGGCGTAACCTATAAACTGTACAATCCTAAAGCGACACTAAAGATATTCTCCACTGGTGGTGTGACTATCACAGCCCGTAGCGTGAACGACGTGCAGTCCGCGGTGGAGCGCATCTTCCCGCTCGTGCACGAGTTCCGCAAGCCGCGCTCGCCCGCCGACGAGGAGGCGCTGCGACAGAAGCGAGCGGCGCGACAGGCCCCGCCCCCCGCCGCGCCGCGCCCCGTCCCGCCCCGCGCCGCCCCCGCCGACGCCCTCAACCTCGTCACGCTCTCGGACGACGAGGGCGCCGCCGCCTGGGAGTGA

Protein

MATLIQENGIKELSKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFEVRFRNFRVVNVLGTCRMPFGIRIISFSKKYKEADYEPELHPGVTYKLYNPKATLKIFSTGGVTITARSVNDVQSAVERIFPLVHEFRKPRSPADEEALRQKRAARQAPPPAAPRPVPPRAAPADALNLVTLSDDEGAAAWE

Uniprot

H9J0T4   A0A2A4JPY4   A0A2A4JRM7   A0A194R3G8   A0A2H1VDQ2   A0A194PMF8   + More
A0A212FEL2   S4PY00   N6U3Q4   A0A2J7QI38   A0A2J7QI28   A0A2P8YQ64   D6WNH0   A0A067RJ31   A0A1B6GA63   A0A026WJN1   A0A1B6MNQ1   A0A1B6DYM7   E2CAH2   E2ACP7   A0A154PLK3   W8B3T3   E0VQA4   A0A088A2E8   A0A195CT22   A0A2A3EB30   A0A182JQP7   A0A182PG90   R4G4Q3   E9IK99   A0A0L7R3R2   A0A182YK24   A0A0K8TKU0   F4W4S8   A0A195F0P2   A0A182T529   A0A158P3M5   A0A023F913   A0A151JNC5   A0A1B6JF28   A0A2R4SE37   A0A151XG60   A0A182RCF2   A0A2M3ZJ17   A0A182FNA9   A0A195BZ19   A0A0A9ZFM7   A0A2M4AQ76   A0A2M4ARC4   A0A2M4ARB6   A0A1Y1LXD8   A0A182NHS7   A0A2S0DSZ4  

Pubmed

19121390    26354079    22118469    23622113    23537049    29403074    + More
18362917    19820115    24845553    24508170    30249741    20798317    24495485    20566863    21282665    25244985    26369729    21719571    21347285    25474469    25401762    26823975    28004739    29190301   

EMBL

BABH01010311    NWSH01000819    PCG74061.1    PCG74062.1    KQ460779    KPJ12237.1    + More
ODYU01001971    SOQ38906.1    KQ459598    KPI94621.1    AGBW02008931    OWR52148.1    GAIX01004153    JAA88407.1    APGK01040689    APGK01040690    KB740984    KB631675    ENN76215.1    ERL85312.1    NEVH01013962    PNF28239.1    PNF28240.1    PYGN01000437    PSN46400.1    KQ971343    EFA04368.2    KK852655    KDR19315.1    GECZ01010450    JAS59319.1    KK107167    QOIP01000010    EZA56257.1    RLU17756.1    GEBQ01002400    JAT37577.1    GEDC01031703    GEDC01006522    JAS05595.1    JAS30776.1    GL453976    EFN75083.1    GL438568    EFN68791.1    KQ434972    KZC12732.1    GAMC01010750    JAB95805.1    DS235408    EEB15560.1    KQ977304    KYN03795.1    KZ288311    PBC28502.1    ACPB03015499    GAHY01001155    JAA76355.1    GL763924    EFZ19034.1    KQ414663    KOC65381.1    GDAI01002852    JAI14751.1    GL887553    EGI70797.1    KQ981880    KYN33931.1    ADTU01008262    GBBI01000761    JAC17951.1    KQ978852    KYN27950.1    GECU01023134    GECU01012241    GECU01010213    GECU01007801    JAS84572.1    JAS95465.1    JAS97493.1    JAS99905.1    MF101774    AVZ46911.1    KQ982174    KYQ59337.1    GGFM01007816    MBW28567.1    KQ976394    KYM93163.1    GBHO01015747    GBHO01015743    GBHO01002914    GDHC01021072    JAG27857.1    JAG27861.1    JAG40690.1    JAP97556.1    GGFK01009447    MBW42768.1    GGFK01010025    MBW43346.1    GGFK01009941    MBW43262.1    GEZM01044431    JAV78223.1    KY809868    ATI09793.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000019118    + More
UP000030742    UP000235965    UP000245037    UP000007266    UP000027135    UP000053097    UP000279307    UP000008237    UP000000311    UP000076502    UP000009046    UP000005203    UP000078542    UP000242457    UP000075881    UP000075885    UP000015103    UP000053825    UP000076408    UP000007755    UP000078541    UP000075901    UP000005205    UP000078492    UP000075809    UP000075900    UP000069272    UP000078540    UP000075884   

PRIDE

H9J0T4   

Pfam

PF00352   TBP

Interpro

IPR000814   TBP        + More
IPR012295   TBP_dom_sf       
IPR015445   TBP-like       

Gene 3D

3.30.310.10    

CDD

cd04517  TLF

ProteinModelPortal

H9J0T4   A0A2A4JPY4   A0A2A4JRM7   A0A194R3G8   A0A2H1VDQ2   A0A194PMF8   + More
A0A212FEL2   S4PY00   N6U3Q4   A0A2J7QI38   A0A2J7QI28   A0A2P8YQ64   D6WNH0   A0A067RJ31   A0A1B6GA63   A0A026WJN1   A0A1B6MNQ1   A0A1B6DYM7   E2CAH2   E2ACP7   A0A154PLK3   W8B3T3   E0VQA4   A0A088A2E8   A0A195CT22   A0A2A3EB30   A0A182JQP7   A0A182PG90   R4G4Q3   E9IK99   A0A0L7R3R2   A0A182YK24   A0A0K8TKU0   F4W4S8   A0A195F0P2   A0A182T529   A0A158P3M5   A0A023F913   A0A151JNC5   A0A1B6JF28   A0A2R4SE37   A0A151XG60   A0A182RCF2   A0A2M3ZJ17   A0A182FNA9   A0A195BZ19   A0A0A9ZFM7   A0A2M4AQ76   A0A2M4ARC4   A0A2M4ARB6   A0A1Y1LXD8   A0A182NHS7   A0A2S0DSZ4  

PDB

6O9L     E-value=2.92043e-32,     Score=345

KEGG

101739652    K03120 transcription initiation factor TFIID TATA-box-binding protein | (RefSeq) TATA box-binding pr

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0006352   GO:0001016   GO:0000978   GO:0006366   GO:0000126   GO:0005669   GO:0005667   GO:0003700   GO:0070898   GO:0008134   GO:0000979   GO:0032440   GO:0016021   GO:0016020   GO:0005839   GO:0051603   GO:0008483   GO:0006418   GO:0016507   GO:0048384  

PANTHER

PTHR10126  

Length:

300

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04553

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.02041

outside

1  -  300

 

 

Pi

178.754019

Theta

140.626023

Tajima's D

-1.19497

CLR

2.33961

CSRT

0.103744812759362

Interpretation

Uncertain